mRNA_H-canaliculatus_F_contig10279.290.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: D7FHI7_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI7_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 5.000e-18 Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 1 Query: 7 VATGDLDGDGDTDIIASYFDSWYLYYGSIEGGRVTWHENDGNGTFAVGYDIGLLEGINSAVAADIDNDGDLDIVACTG-GGRIVYFEN 267 V T D+DGDGD DII++ FD + GS GR+ W ENDG+G+FA G D+GLL+ + VA D+DNDGD+D+VAC G GG IV++EN Sbjct: 272 VVTADIDGDGDIDIISASFDGNHTA-GSFPDGRILWLENDGSGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLVACDGVGGSIVWYEN 358
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: D7FHI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI6_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 2.090e-16 Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 1 Query: 7 VATGDLDGDGDTDIIASYFDSWYLYYGSIEGGRVTWHENDGNGTFAVGYDIGLLEGINSAVAADIDNDGDLDIVACTG-GGRIVYFEN 267 V T D+DGDGD DII++ FD + G+ GR+ W ENDG G+FA G D+GLL+ + VA D+DNDGD+D++AC GG IV++EN Sbjct: 162 VVTADIDGDGDMDIISASFDGNHTA-GNFPDGRILWLENDGLGSFAEGRDVGLLDSARNVVAVDLDNDGDIDLLACENVGGHIVWYEN 248
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: A0A6H5K481_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K481_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 2.290e-7 Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 4 YVATGDLDGDGDTDIIA-SYFDSWYLYYGSIEGGRVTWHEN-DGNGTFAVGYDIGLLEGINSAVA 192 YVA GDLDGDGD D+++ SY+D GRVTW+EN DG GTFAVG DI +L + SAVA Sbjct: 259 YVAAGDLDGDGDLDVVSGSYYD-----------GRVTWYENTDGAGTFAVGQDIDILPSVASAVA 312
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: A0A2N2YDB2_9BACT (Uncharacterized protein n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A2N2YDB2_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 2.500e-7 Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 16 GDLDGDGDTDIIASYFDSWYLYYGSIE-GGRVTWHEN-DGNGTFAVG-YDIGLLEGINSAVAADIDNDGDLDIVACTGGGR-IVYFEN 267 GD+DGDG D+I G+I+ G V W+EN DG GTF Y L G S VA D+DNDGDLD++A TGG + +V+FEN Sbjct: 125 GDIDGDGXVDLI-----------GAIDLSGSVVWYENLDGLGTFGPRTYITFTLNGCRSIVAQDMDNDGDLDVIAATGGNKTVVWFEN 201
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: A0A349NRA1_9FLAO (Uncharacterized protein (Fragment) n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A349NRA1_9FLAO) HSP 1 Score: 60.1 bits (144), Expect = 5.800e-7 Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 1 Query: 1 RYVATGDLDGDGDTDI-IASYFDSWYLYYGSIEGGRVTWHEN-DGNGTFAVGYDI-GLLEGINSAVAADIDNDGDLDIV-ACTGGGRIVYFEN 267 R V D DGDGD D+ ++S++D ++TW EN DG GT+ I + + +A+AADIDNDGD+D+V A R+++FEN Sbjct: 38 RSVNAADFDGDGDMDLLVSSFYDE-----------KITWFENIDGQGTYGTPNIITAIADNAYNAIAADIDNDGDMDVVSAYVDDNRVIWFEN 119
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: A0A518I049_9BACT (FG-GAP repeat protein n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518I049_9BACT) HSP 1 Score: 62.4 bits (150), Expect = 1.780e-6 Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 1 RYVATGDLDGDGDTDIIASYFDSWYLYYGSIEGGRVTWHENDGNGTFA---VGYDIGLLEGINSAVAADIDNDGDLDIVACT 237 R A GDLDGDGDTDI+ +Y D GRV W EN GN TF V Y+ G ++ + ADID DG+LD++ T Sbjct: 215 RATAMGDLDGDGDTDIVTAYRDK----------GRVIWFENTGNQTFVERIVAYNAGKVDDV---AIADIDQDGNLDVLVAT 283
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: A0A2E8MZU0_9RICK (Cadherin domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8MZU0_9RICK) HSP 1 Score: 61.6 bits (148), Expect = 2.030e-6 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1 Query: 4 YVATGDLDGDGDTDIIASYFDSWYLYYGSIEGGRVTWHENDGNGTFAVGYDIGLLEGINSAVA-ADIDNDGDLDIVACTGGGRIVYFEN 267 YV+T D+DGDGD D+I+ D + Y+ + +G + D +D GL G +S ADIDNDGDLD+++ +GGG I Y+EN Sbjct: 261 YVSTADIDGDGDLDVISGALDGTFYYFRNDDGTFIAQTGTDNP------FD-GLNVGSDSRHEFADIDNDGDLDLISGSGGGAIYYYEN 342
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: UPI00166CF435 (FG-GAP-like repeat-containing protein n=1 Tax=Hymenobacter cavernae TaxID=2044852 RepID=UPI00166CF435) HSP 1 Score: 62.0 bits (149), Expect = 2.670e-6 Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 1 RYVATGDLDGDGDTDIIASYFDSWYLYYGSIEG-GRVTWHENDGNGTFAVGYDIGLLEGINSAVAADIDNDGDLDIVACTG 240 R VA GD+D DGD DI+A+ + L GS G G VT N G+GTF G + + +GIN D+DNDGDLD++A G Sbjct: 259 RSVALGDVDADGDLDILAT--SNRELGGGSYLGPGLVTVLLNSGSGTFTAGQQVEMPQGINQVSVGDLDNDGDLDLLASDG 337
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: A0A2N2Y6Z4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-2 TaxID=2013688 RepID=A0A2N2Y6Z4_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 3.410e-6 Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1 Query: 7 VATGDLDGDGDTDIIASYFDSWYLYYGSIEGGRVTWHEN-DGNGTFAVGYD-IGLLEGINSAVAADIDNDGDLDIVACTG 240 V + DLDGDGD DI+ + S+ V W+EN DG G+F+ G+ I L + A+AADIDNDGDLD++A +G Sbjct: 38 VFSADLDGDGDKDILTA----------SVAAQTVAWYENLDGLGSFSTGHVLISNLLDVRDAIAADIDNDGDLDVIATSG 107
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Match: A0A1G1SQ80_9BACT (IPT/TIG domain-containing protein n=1 Tax=Hymenobacter coccineus TaxID=1908235 RepID=A0A1G1SQ80_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 7.630e-6 Identity = 35/74 (47.30%), Postives = 42/74 (56.76%), Query Frame = 1 Query: 7 VATGDLDGDGDTDIIASYFDSWYLYYGSIEGGRVTWHENDGNGTFAVGYDIGLLEGINSAVAADIDNDGDLDIV 228 VA GDLDGDGD D++ASYFD+ G + N+G GTF G I L G+ S D D DGDLD+V Sbjct: 732 VALGDLDGDGDLDLVASYFDNGK--------GGIEVRFNNGAGTFGGGTSINLPVGVFSLALGDFDGDGDLDLV 797 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10279.290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10279.290.1 >prot_H-canaliculatus_F_contig10279.290.1 ID=prot_H-canaliculatus_F_contig10279.290.1|Name=mRNA_H-canaliculatus_F_contig10279.290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=287bp RYVATGDLDGDGDTDIIASYFDSWYLYYGSIEGGRVTWHENDGNGTFAVGback to top mRNA from alignment at H-canaliculatus_F_contig10279:75..3873+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10279.290.1 ID=mRNA_H-canaliculatus_F_contig10279.290.1|Name=mRNA_H-canaliculatus_F_contig10279.290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3799bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10279:75..3873+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10279:75..3873+ >mRNA_H-canaliculatus_F_contig10279.290.1 ID=mRNA_H-canaliculatus_F_contig10279.290.1|Name=mRNA_H-canaliculatus_F_contig10279.290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1722bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10279:75..3873+ (Hapterophycus canaliculatus Oshoro5f female)back to top |