mRNA_H-canaliculatus_F_contig10276.289.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10276.289.1
Unique NamemRNA_H-canaliculatus_F_contig10276.289.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10276.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10276contigH-canaliculatus_F_contig10276:4482..4955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10276.289.1prot_H-canaliculatus_F_contig10276.289.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10276 4535..4909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928661.3073378-UTR-H-canaliculatus_F_contig10276:4481..45341622928661.3073378-UTR-H-canaliculatus_F_contig10276:4481..4534Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10276 4482..4534 +
1696845516.9696422-UTR-H-canaliculatus_F_contig10276:4481..45341696845516.9696422-UTR-H-canaliculatus_F_contig10276:4481..4534Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10276 4482..4534 +
1622928661.339728-UTR-H-canaliculatus_F_contig10276:4909..49551622928661.339728-UTR-H-canaliculatus_F_contig10276:4909..4955Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10276 4910..4955 +
1696845516.989068-UTR-H-canaliculatus_F_contig10276:4909..49551696845516.989068-UTR-H-canaliculatus_F_contig10276:4909..4955Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10276 4910..4955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928661.3254519-CDS-H-canaliculatus_F_contig10276:4534..49091622928661.3254519-CDS-H-canaliculatus_F_contig10276:4534..4909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10276 4535..4909 +
1696845516.9791558-CDS-H-canaliculatus_F_contig10276:4534..49091696845516.9791558-CDS-H-canaliculatus_F_contig10276:4534..4909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10276 4535..4909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10276.289.1

>prot_H-canaliculatus_F_contig10276.289.1 ID=prot_H-canaliculatus_F_contig10276.289.1|Name=mRNA_H-canaliculatus_F_contig10276.289.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MPSLRCSCSTKRPVWEIHGETQTQRRFKTNRFKPHGDMQASGGARPVWAG
ERSPATRWPLRPPCLSYPSTCPLLKTRTKTCPSPFPLRQTIMWLRSRTSF
ADAVDERGTNTPKTRLPIAAGAPP*
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mRNA from alignment at H-canaliculatus_F_contig10276:4482..4955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10276.289.1 ID=mRNA_H-canaliculatus_F_contig10276.289.1|Name=mRNA_H-canaliculatus_F_contig10276.289.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10276:4482..4955+ (Hapterophycus canaliculatus Oshoro5f female)
GATCAGGACTCGGCCTTCAACGGCCTTCAACTCGAGAAGCAAACGCTTCA
AACATGCCATCCCTGCGATGTTCCTGTTCGACGAAACGGCCTGTCTGGGA
GATTCATGGTGAAACCCAGACACAGAGACGTTTCAAGACGAACCGTTTCA
AGCCACACGGGGATATGCAAGCATCAGGTGGCGCGCGCCCCGTGTGGGCG
GGTGAGCGAAGCCCCGCGACACGCTGGCCCTTGAGACCTCCCTGCCTCTC
GTATCCATCCACGTGCCCCCTCCTCAAGACCCGCACAAAAACCTGTCCTT
CCCCGTTTCCTCTGCGTCAGACAATCATGTGGTTGAGATCGCGGACTTCT
TTTGCCGATGCTGTTGACGAGCGTGGCACTAATACGCCGAAGACACGGCT
GCCTATCGCAGCTGGTGCTCCCCCGTAAGCAAAGCAAGGGGGGCACGCAA
GCTTGTCGTGGCAGGACTGGTGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10276:4482..4955+

>mRNA_H-canaliculatus_F_contig10276.289.1 ID=mRNA_H-canaliculatus_F_contig10276.289.1|Name=mRNA_H-canaliculatus_F_contig10276.289.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10276:4482..4955+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCATCCCTGCGATGTTCCTGTTCGACGAAACGGCCTGTCTGGGAGAT
TCATGGTGAAACCCAGACACAGAGACGTTTCAAGACGAACCGTTTCAAGC
CACACGGGGATATGCAAGCATCAGGTGGCGCGCGCCCCGTGTGGGCGGGT
GAGCGAAGCCCCGCGACACGCTGGCCCTTGAGACCTCCCTGCCTCTCGTA
TCCATCCACGTGCCCCCTCCTCAAGACCCGCACAAAAACCTGTCCTTCCC
CGTTTCCTCTGCGTCAGACAATCATGTGGTTGAGATCGCGGACTTCTTTT
GCCGATGCTGTTGACGAGCGTGGCACTAATACGCCGAAGACACGGCTGCC
TATCGCAGCTGGTGCTCCCCCGTAAATGCCATCCCTGCGATGTTCCTGTT
CGACGAAACGGCCTGTCTGGGAGATTCATGGTGAAACCCAGACACAGAGA
CGTTTCAAGACGAACCGTTTCAAGCCACACGGGGATATGCAAGCATCAGG
TGGCGCGCGCCCCGTGTGGGCGGGTGAGCGAAGCCCCGCGACACGCTGGC
CCTTGAGACCTCCCTGCCTCTCGTATCCATCCACGTGCCCCCTCCTCAAG
ACCCGCACAAAAACCTGTCCTTCCCCGTTTCCTCTGCGTCAGACAATCAT
GTGGTTGAGATCGCGGACTTCTTTTGCCGATGCTGTTGACGAGCGTGGCA
CTAATACGCCGAAGACACGGCTGCCTATCGCAGCTGGTGCTCCCCCGTAA
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