mRNA_H-canaliculatus_F_contig1027.281.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1027.281.1
Unique NamemRNA_H-canaliculatus_F_contig1027.281.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.860e-18
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVKYSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVVSTNA 259
            PG+RVA+A +   + AY+RS+G LP  A++ + +   +A+ AD  CG  T L+LY+EPG++LSRPFT +DTH P  GDLLVV T +
Sbjct:  580 PGMRVAIAAESEGLDAYERSLGGLPGAAISSTQNSATAALFADQYCGAGTALILYVEPGSVLSRPFTSKDTHSP-RGDLLVVHTGS 664
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BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.960e-18
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVKYSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVVSTNA 259
            PG+RVA+A +   + AY+RS+G LP V V+ + +   +A+ AD  CG  T L+LY+EPG++LSRPFT +DTH P  GDLLVV T +
Sbjct: 1213 PGMRVAIAAEAEGLDAYERSMGGLPGVTVSGTQNPATAALFADQYCGPGTALILYVEPGSVLSRPFTSKDTHSP-RGDLLVVHTGS 1297
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.400e-17
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVKYSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVVSTNA 259
            PG+RVA+A +   + AY+RS+G LP V ++ + +   +A+ AD  CG  T L+LY+EPG++LSRPFT +DTH P   DLLVV T +
Sbjct: 1269 PGIRVAIAAEAEGLDAYERSMGGLPGVTISSTQNPATAALFADQYCGPGTALILYVEPGSVLSRPFTSKDTHSP-RSDLLVVYTGS 1353
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: A0A6H5KI77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI77_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 8.970e-17
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVKYSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVVSTNAARAGPRHATFADSAGEILGARNLPAFVAG 346
            PG+RVAVA  P +   + R++G LP V +  +  V++ A+ AD  CG+ T L+ Y+  G +LSR FT++DTH  V GDL+V +T++A+    HA  A  +  +LG    PAF  G
Sbjct:  335 PGMRVAVATHPRDFQVFNRTLGYLPDVTIENASRVEHGALIADQICGNGTRLIYYMNVGEVLSRTFTRKDTHG-VLGDLIVSATDSAQVPLEHARRAAGSAVLLGF-TTPAFTYG 447
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.640e-15
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVKYSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVV 247
            PG+RVA+A     + AY+RS+G  P V ++ + +   +++ AD  CG  T L+LY+EPG++LSRPFT +DTH P  GDLLVV
Sbjct:  473 PGMRVAIAAGAKGLDAYERSMGGRPGVTISSTQNPATASLFADRFCGAGTALILYVEPGSVLSRPFTFKDTHSP-RGDLLVV 553
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: D7FI38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI38_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.570e-15
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVKYSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVV 247
            PG+RVA+A     + AY+RS+G LP V ++ + +   +++ AD  CG  T L+LY+E G++LSRPFT +DTH P  GDLLVV
Sbjct:  415 PGMRVAIAAGAKGLDAYERSMGGLPGVTISSTHNPATASLFADRFCGAGTALILYVELGSVLSRPFTSKDTHSP-RGDLLVV 495
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: D7FKL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL9_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.270e-14
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVKYSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVVSTN 256
            PG+R+ +   P E   + R+ G LP+V V  S +V++  + AD  CG+ T L+ Y++ G +LSR FTK+DTH  VTGDL+V   N
Sbjct:  435 PGMRIGITTHPREFEEFNRTFGHLPNVTVGTSTNVEHGPLVADYICGEGTRLIYYMDAGEMLSRTFTKKDTHT-VTGDLIVSLVN 518
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: D8LCC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.100e-13
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVK-YSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVVSTNAARAGPRHATFADSAGEILG 316
            PG+RV +AVD      + R++G  P V V  +     ++++ AD+ CG+ T+L+LYL PG ++SRPF+K+DTH    G+LLV  T   R    H     +   +LG
Sbjct:  546 PGMRVRLAVDTIHFSVFNRTLGGYPDVEVVNATTTGGHASLLADVHCGEGTKLILYLGPGDVVSRPFSKKDTHG-TRGELLVPYTEPERLDEYHIKRTQATTSLLG 650
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: A0A6H5JKY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.360e-12
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 2 
Query:    2 PGVRVAVAVDPSEMGAYQRSIGSLPSVAVTRSIDVK-YSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVVSTNAARAGPRHATFADSAGEILG 316
            PG+RV +AVD      + R++G  P V +  +     ++++ AD+ CG+ T+L+LYL PG ++SRPF+K+DTH    G LLV  T   R    H     +   +LG
Sbjct:  582 PGMRVRLAVDTIHFSVFNRTLGGYPDVEIVNATTTGGHASLLADVHCGEGTKLILYLGPGDVVSRPFSKKDTHG-TCGQLLVPYTEPDRLDEYHVRRTQATTFLLG 686
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Match: A0A6H5KL81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL81_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.670e-11
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 2 
Query:   56 RSIGSLPSVAVTRSIDVKYSAVTADLRCGDDTELVLYLEPGALLSRPFTKEDTHDPVTGDLLVVSTNAARAGPRHATFADSAGEILGARNLPAFVAG 346
            R++G LP V +  +  V++ A+ AD  CG+ T L+ Y+  G +LSR FT++DTH  V GDL+V +T++A+    HA  A  +  +LG    PAF  G
Sbjct:    4 RTLGYLPDVTIGNASRVEHGALIADQICGNGTRLIYYMNVGEVLSRTFTRKDTHG-VLGDLIVSATDSAQVPLEHARRAAGSAVLLGF-TTPAFTYG 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1027.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L4M7_9PHAE2.860e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI63_ECTSI2.960e-1851.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI39_ECTSI1.400e-1748.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI77_9PHAE8.970e-1740.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L131_9PHAE2.640e-1548.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI38_ECTSI3.570e-1548.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKL9_ECTSI1.270e-1443.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCC7_ECTSI2.100e-1337.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKY0_9PHAE1.360e-1236.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL81_9PHAE3.670e-1140.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1027contigH-canaliculatus_F_contig1027:2278..3708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size349
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1027.281.1prot_H-canaliculatus_F_contig1027.281.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1027 2278..3707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928660.4451294-CDS-H-canaliculatus_F_contig1027:2277..23341622928660.4451294-CDS-H-canaliculatus_F_contig1027:2277..2334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1027 2278..2334 +
1696845516.6278858-CDS-H-canaliculatus_F_contig1027:2277..23341696845516.6278858-CDS-H-canaliculatus_F_contig1027:2277..2334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1027 2278..2334 +
1622928660.465251-CDS-H-canaliculatus_F_contig1027:2686..28681622928660.465251-CDS-H-canaliculatus_F_contig1027:2686..2868Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1027 2687..2868 +
1696845516.6376069-CDS-H-canaliculatus_F_contig1027:2686..28681696845516.6376069-CDS-H-canaliculatus_F_contig1027:2686..2868Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1027 2687..2868 +
1622928660.4776545-CDS-H-canaliculatus_F_contig1027:3598..37071622928660.4776545-CDS-H-canaliculatus_F_contig1027:3598..3707Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1027 3599..3707 +
1696845516.6490126-CDS-H-canaliculatus_F_contig1027:3598..37071696845516.6490126-CDS-H-canaliculatus_F_contig1027:3598..3707Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1027 3599..3707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1027.281.1

>prot_H-canaliculatus_F_contig1027.281.1 ID=prot_H-canaliculatus_F_contig1027.281.1|Name=mRNA_H-canaliculatus_F_contig1027.281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
ARRSRSGCGGPLGDGRIPAIHWLPSERSCDALDRREILGGNCRPPLRGRH
GARSVPRAGRAAVPPVHEGGHTRPCHGRPPRGEHKCGKGRTPARDFRRLR
RGDSRGQKSPRLRRGG
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mRNA from alignment at H-canaliculatus_F_contig1027:2278..3708+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1027.281.1 ID=mRNA_H-canaliculatus_F_contig1027.281.1|Name=mRNA_H-canaliculatus_F_contig1027.281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1431bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1027:2278..3708+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCGGCGTTCGCGTAGCGGTTGCGGTGGACCCCTCGGAGATGGGCGCAT
ACCAGCGGTGAGTTCCGGGGAGGGAAGGAGGGGAAGGGCAAGAAATGGAA
TGACGGGGGGGGCGAGCCGTGGTCTAGGGTCGTAGTCTCCAGCAGAAATA
AACTTTCTGTGACTCAACCCACATAATTGACCCGATTCGACTCCAGATTC
AGCGTTTCGCGTGCGGGTCCTGTTTCCTGTATTTTTCTTTGTGCCCTCTT
CCCCTTCTCGTCCTTGGCTCCATCAGAGGGGAGCACCGACATACTGTCGC
CCGTCTTCTTTAACAGAGATGTAAGGTGGTCGCTTGGCCGCGGCGTTCCT
TTTGCCATGACCTTTCTGAATGGCGTCCTCTTCCCTGCTCTACCTCGCAT
TCACATCAGATCCATTGGCTCCCTTCCGAGCGTAGCTGTGACGCGCTCGA
TAGACGTGAAATACTCGGCGGTAACTGCCGACCTCCGCTGCGGGGACGAC
ACGGAGCTCGTTCTGTACCTCGAGCCGGGCGCGCTGCTGTCCCGCCCGTT
CACGAAGGAGGACACACACGACCCTGTCACGGGCGACCTCCGTGAGTTGC
TTTCGCCGTTTCCGTCGTTGTCGCTACTGCTGCTGCTGTTGTTCAGCTTC
TCTTTTTCCTGTGGCTTCCTCTGCTGAATCTCAGTAGTGCTTCTCCTTAG
TTTCACAACTACCTCCATCAGCGATCCCAACTCACGTCCGGCCAGCACGT
TGAACAATCCGCTCGTCCGGTGGAATGCAAGTAGAAAATCGTCACCAGAG
CTTAGATGCCTGGTTTTTCTCGTCCACGGGCCATTTCTGCTGCTGCTGCT
GCTGCTTACAAGTATAACACGACTATTGTAACACGAGTATTACTCCTCTC
GGAGAGTAGCAGTCGTCCTGCGACACTGCGTTGTCCCTAACCCCGCGCTC
GTTCTGGCGAAGTAGAAGGACCCGCCCTAGCGTGTCTGATCACCCCATCC
CGTTATCATAAGCACCCTTCTGACCAGCCCACTTCGTCGATCTTCCTCCC
CAGGTTTATATGAAAGAGGTTTGTTACTTTCGTTGTGTTTGTTGACGCGT
GAGCTCTTTGAAGTGCTCCCACGAAGTTTGCGCAGCCGTCTTTGCCGAGG
CTTTCGCTGCTGGCTCTTATCGCTCGTCGCTAAACTCTGAACAGGGTCTC
CGTATTCCGCAATACTAGCCCTAGGAAGCCCCTGAACATCCCCAGCTAAT
ACCGGCCTCCGACACGCCCTTCACCACTATCCCGAAAATTTCGGCATCGG
CGACACGTATGCATGAAACAGTCGTGGTGAGCACAAATGCGGCAAGGGCA
GGACCCCGGCACGCGACTTTCGCCGACTCCGCCGGGGAGATTCTAGGGGC
CAGAAATCTCCCCGCCTTCGTCGCGGGGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1027:2278..3708+

>mRNA_H-canaliculatus_F_contig1027.281.1 ID=mRNA_H-canaliculatus_F_contig1027.281.1|Name=mRNA_H-canaliculatus_F_contig1027.281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1027:2278..3708+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCGGCGTTCGCGTAGCGGTTGCGGTGGACCCCTCGGAGATGGGCGCAT
ACCAGCGGCCCGGCGTTCGCGTAGCGGTTGCGGTGGACCCCTCGGAGATG
GGCGCATACCAGCGATCCATTGGCTCCCTTCCGAGCGTAGCTGTGACGCG
CTCGATAGACGTGAAATACTCGGCGGTAACTGCCGACCTCCGCTGCGGGG
ACGACACGGAGCTCGTTCTGTACCTCGAGCCGGGCGCGCTGCTGTCCCGC
CCGTTCACGAAGGAGGACACACACGACCCTGTCACGGGCGACCTCCATCC
ATTGGCTCCCTTCCGAGCGTAGCTGTGACGCGCTCGATAGACGTGAAATA
CTCGGCGGTAACTGCCGACCTCCGCTGCGGGGACGACACGGAGCTCGTTC
TGTACCTCGAGCCGGGCGCGCTGCTGTCCCGCCCGTTCACGAAGGAGGAC
ACACACGACCCTGTCACGGGCGACCTCCTCGTGGTGAGCACAAATGCGGC
AAGGGCAGGACCCCGGCACGCGACTTTCGCCGACTCCGCCGGGGAGATTC
TAGGGGCCAGAAATCTCCCCGCCTTCGTCGCGGGGGCTCGTGGTGAGCAC
AAATGCGGCAAGGGCAGGACCCCGGCACGCGACTTTCGCCGACTCCGCCG
GGGAGATTCTAGGGGCCAGAAATCTCCCCGCCTTCGTCGCGGGGGC
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