mRNA_H-canaliculatus_F_contig10264.279.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10264.279.1
Unique NamemRNA_H-canaliculatus_F_contig10264.279.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10264.279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10264contigH-canaliculatus_F_contig10264:2983..3344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size362
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928660.0243454-CDS-H-canaliculatus_F_contig10264:2982..33301622928660.0243454-CDS-H-canaliculatus_F_contig10264:2982..3330Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10264 2983..3330 +
1696845516.4996667-CDS-H-canaliculatus_F_contig10264:2982..33301696845516.4996667-CDS-H-canaliculatus_F_contig10264:2982..3330Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10264 2983..3330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928660.0843883-UTR-H-canaliculatus_F_contig10264:3330..33441622928660.0843883-UTR-H-canaliculatus_F_contig10264:3330..3344Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10264 3331..3344 +
1696845516.5097232-UTR-H-canaliculatus_F_contig10264:3330..33441696845516.5097232-UTR-H-canaliculatus_F_contig10264:3330..3344Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10264 3331..3344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10264.279.1prot_H-canaliculatus_F_contig10264.279.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10264 2983..3330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10264.279.1

>prot_H-canaliculatus_F_contig10264.279.1 ID=prot_H-canaliculatus_F_contig10264.279.1|Name=mRNA_H-canaliculatus_F_contig10264.279.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
VRYRRGGGACGIVRPWRLRLRDHPLCSVLVSGCGESFVRRGGAPRELSAL
TAAVCACVYVREVSARLGWVGSPRLSPSARKAEPARDASPHQQNQAVASA
PSSFFDPASPPGAVV*
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mRNA from alignment at H-canaliculatus_F_contig10264:2983..3344+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10264.279.1 ID=mRNA_H-canaliculatus_F_contig10264.279.1|Name=mRNA_H-canaliculatus_F_contig10264.279.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=362bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10264:2983..3344+ (Hapterophycus canaliculatus Oshoro5f female)
GTACGATACCGCCGCGGAGGAGGTGCCTGTGGAATAGTGCGTCCATGGAG
GCTAAGGCTACGGGATCATCCCCTTTGCAGCGTTTTGGTTTCCGGTTGCG
GGGAGTCCTTCGTACGCCGAGGAGGGGCCCCGCGAGAGCTCTCAGCTCTT
ACGGCTGCCGTATGCGCGTGCGTGTACGTGAGAGAAGTTTCCGCGAGACT
AGGATGGGTCGGTTCGCCTCGCCTCTCGCCCTCTGCACGTAAAGCCGAGC
CAGCGCGCGATGCGTCGCCTCACCAGCAGAACCAAGCTGTCGCTTCTGCT
CCTTCTTCTTTTTTCGACCCCGCTTCTCCCCCCGGCGCCGTGGTCTGAGC
CCGTTTTCGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10264:2983..3344+

>mRNA_H-canaliculatus_F_contig10264.279.1 ID=mRNA_H-canaliculatus_F_contig10264.279.1|Name=mRNA_H-canaliculatus_F_contig10264.279.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10264:2983..3344+ (Hapterophycus canaliculatus Oshoro5f female)
GTACGATACCGCCGCGGAGGAGGTGCCTGTGGAATAGTGCGTCCATGGAG
GCTAAGGCTACGGGATCATCCCCTTTGCAGCGTTTTGGTTTCCGGTTGCG
GGGAGTCCTTCGTACGCCGAGGAGGGGCCCCGCGAGAGCTCTCAGCTCTT
ACGGCTGCCGTATGCGCGTGCGTGTACGTGAGAGAAGTTTCCGCGAGACT
AGGATGGGTCGGTTCGCCTCGCCTCTCGCCCTCTGCACGTAAAGCCGAGC
CAGCGCGCGATGCGTCGCCTCACCAGCAGAACCAAGCTGTCGCTTCTGCT
CCTTCTTCTTTTTTCGACCCCGCTTCTCCCCCCGGCGCCGTGGTCTGAGT
ACGATACCGCCGCGGAGGAGGTGCCTGTGGAATAGTGCGTCCATGGAGGC
TAAGGCTACGGGATCATCCCCTTTGCAGCGTTTTGGTTTCCGGTTGCGGG
GAGTCCTTCGTACGCCGAGGAGGGGCCCCGCGAGAGCTCTCAGCTCTTAC
GGCTGCCGTATGCGCGTGCGTGTACGTGAGAGAAGTTTCCGCGAGACTAG
GATGGGTCGGTTCGCCTCGCCTCTCGCCCTCTGCACGTAAAGCCGAGCCA
GCGCGCGATGCGTCGCCTCACCAGCAGAACCAAGCTGTCGCTTCTGCTCC
TTCTTCTTTTTTCGACCCCGCTTCTCCCCCCGGCGCCGTGGTCTGA
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