mRNA_H-canaliculatus_F_contig10264.278.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10264.278.1
Unique NamemRNA_H-canaliculatus_F_contig10264.278.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10264.278.1 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.100e-27
Identity = 92/156 (58.97%), Postives = 101/156 (64.74%), Query Frame = 1 
Query:   70 QSVCRSVLVKEGQGASAVSGVLELPDRPQTGRWYLTARAACDDSLGAAGQGXXXXXXXXXXXXXXXFLEAAEVPPGVAAEDND--EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNIYSGSGWGLEVLSLQRDWAHVEWSADFLVP--GFGGG 525
            Q VCRSV+V  GQGA AVSG L+LPDRPQTGRWYLTARAAC+ + G AG                     A+VP   AA  ++           XXXXXXXXXXXXXXXX       KNIYSG+GWGLEV+SLQRDWAHVEWSADFLVP  G GGG
Sbjct:  455 QRVCRSVVVG-GQGA-AVSGTLDLPDRPQTGRWYLTARAACEAAPGTAGH---------KQRSLRRSTVGADVPTTSAASQDEGVPGTGGGVPSXXXXXXXXXXXXXXXXVGQEVEEKNIYSGTGWGLEVMSLQRDWAHVEWSADFLVPDGGDGGG 599
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10264.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJD0_9PHAE2.100e-2758.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10264contigH-canaliculatus_F_contig10264:2827..3825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF3522
Ec32 orthologEc-12_004620.1
Exons2
Model size529
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928660.1210184-CDS-H-canaliculatus_F_contig10264:2826..29821622928660.1210184-CDS-H-canaliculatus_F_contig10264:2826..2982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10264 2827..2982 +
1696845516.518485-CDS-H-canaliculatus_F_contig10264:2826..29821696845516.518485-CDS-H-canaliculatus_F_contig10264:2826..2982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10264 2827..2982 +
1622928660.1331837-CDS-H-canaliculatus_F_contig10264:3454..38231622928660.1331837-CDS-H-canaliculatus_F_contig10264:3454..3823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10264 3455..3823 +
1696845516.5275283-CDS-H-canaliculatus_F_contig10264:3454..38231696845516.5275283-CDS-H-canaliculatus_F_contig10264:3454..3823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10264 3455..3823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10264.278.1prot_H-canaliculatus_F_contig10264.278.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10264 2827..3823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10264.278.1

>prot_H-canaliculatus_F_contig10264.278.1 ID=prot_H-canaliculatus_F_contig10264.278.1|Name=mRNA_H-canaliculatus_F_contig10264.278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=175bp
EGQENTELPLDGGAERGGGEESHQSVCRSVLVKEGQGASAVSGVLELPDR
PQTGRWYLTARAACDDSLGAAGQGRRRRSRSRDRGRRRRFLEAAEVPPGV
AAEDNDEGEGGEEREGRRAGAAAPSVAGEGEGEEEKEEKNIYSGSGWGLE
VLSLQRDWAHVEWSADFLVPGFGGG
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mRNA from alignment at H-canaliculatus_F_contig10264:2827..3825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10264.278.1 ID=mRNA_H-canaliculatus_F_contig10264.278.1|Name=mRNA_H-canaliculatus_F_contig10264.278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=999bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10264:2827..3825+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGCCAAGAAAACACGGAGCTACCACTGGACGGGGGGGCGGAAAGGGG
CGGGGGCGAGGAAAGTCACCAGAGCGTTTGCCGGTCGGTGCTCGTCAAAG
AAGGGCAGGGGGCAAGCGCGGTCAGCGGCGTGCTGGAGCTTCCGGATAGG
CCACAGGTACGATACCGCCGCGGAGGAGGTGCCTGTGGAATAGTGCGTCC
ATGGAGGCTAAGGCTACGGGATCATCCCCTTTGCAGCGTTTTGGTTTCCG
GTTGCGGGGAGTCCTTCGTACGCCGAGGAGGGGCCCCGCGAGAGCTCTCA
GCTCTTACGGCTGCCGTATGCGCGTGCGTGTACGTGAGAGAAGTTTCCGC
GAGACTAGGATGGGTCGGTTCGCCTCGCCTCTCGCCCTCTGCACGTAAAG
CCGAGCCAGCGCGCGATGCGTCGCCTCACCAGCAGAACCAAGCTGTCGCT
TCTGCTCCTTCTTCTTTTTTCGACCCCGCTTCTCCCCCCGGCGCCGTGGT
CTGAGCCCGTTTTCGCTCTCTGTGTTCGCCTGTTCACGGCTTTCCCCGCG
CCGCAAATTCGCGCGAACTGCGGCCGGCCGACCTTCCTTCCAAAAACAAA
ACCAAACAAAAAATCACGAAAAAAGCAGACAGGTCGCTGGTACCTGACCG
CTCGTGCGGCTTGCGACGACTCTCTCGGCGCGGCCGGCCAAGGACGACGT
CGACGGAGTCGGAGTCGGGACCGCGGTCGACGGCGGCGGTTTCTGGAAGC
TGCTGAGGTCCCCCCAGGGGTGGCGGCAGAGGACAACGACGAGGGCGAGG
GCGGTGAGGAGCGGGAAGGGAGGAGGGCCGGCGCCGCCGCTCCCTCGGTC
GCCGGAGAAGGAGAGGGAGAGGAAGAAAAAGAAGAAAAGAACATCTACAG
CGGATCCGGGTGGGGACTGGAGGTGCTGTCCCTGCAGCGCGACTGGGCGC
ACGTGGAGTGGAGCGCCGATTTTCTGGTGCCGGGCTTCGGTGGAGGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10264:2827..3825+

>mRNA_H-canaliculatus_F_contig10264.278.1 ID=mRNA_H-canaliculatus_F_contig10264.278.1|Name=mRNA_H-canaliculatus_F_contig10264.278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1050bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10264:2827..3825+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGGCCAAGAAAACACGGAGCTACCACTGGACGGGGGGGCGGAAAGGGG
CGGGGGCGAGGAAAGTCACCAGAGCGTTTGCCGGTCGGTGCTCGTCAAAG
AAGGGCAGGGGGCAAGCGCGGTCAGCGGCGTGCTGGAGCTTCCGGATAGG
CCACAGGAGGGCCAAGAAAACACGGAGCTACCACTGGACGGGGGGGCGGA
AAGGGGCGGGGGCGAGGAAAGTCACCAGAGCGTTTGCCGGTCGGTGCTCG
TCAAAGAAGGGCAGGGGGCAAGCGCGGTCAGCGGCGTGCTGGAGCTTCCG
GATAGGCCACAGACAGGTCGCTGGTACCTGACCGCTCGTGCGGCTTGCGA
CGACTCTCTCGGCGCGGCCGGCCAAGGACGACGTCGACGGAGTCGGAGTC
GGGACCGCGGTCGACGGCGGCGGTTTCTGGAAGCTGCTGAGGTCCCCCCA
GGGGTGGCGGCAGAGGACAACGACGAGGGCGAGGGCGGTGAGGAGCGGGA
AGGGAGGAGGGCCGGCGCCGCCGCTCCCTCGGTCGCCGGAGAAGGAGAGG
GAGAGGAAGAAAAAGAAGAAAAGAACATCTACAGCGGATCCGGGTGGGGA
CTGGAGGTGCTGTCCCTGCAGCGCGACTGGGCGCACGTGGAGTGGAGCGC
CGATTTTCTGGTGCCGGGCTTCGGTGGAGGCACAGGTCGCTGGTACCTGA
CCGCTCGTGCGGCTTGCGACGACTCTCTCGGCGCGGCCGGCCAAGGACGA
CGTCGACGGAGTCGGAGTCGGGACCGCGGTCGACGGCGGCGGTTTCTGGA
AGCTGCTGAGGTCCCCCCAGGGGTGGCGGCAGAGGACAACGACGAGGGCG
AGGGCGGTGAGGAGCGGGAAGGGAGGAGGGCCGGCGCCGCCGCTCCCTCG
GTCGCCGGAGAAGGAGAGGGAGAGGAAGAAAAAGAAGAAAAGAACATCTA
CAGCGGATCCGGGTGGGGACTGGAGGTGCTGTCCCTGCAGCGCGACTGGG
CGCACGTGGAGTGGAGCGCCGATTTTCTGGTGCCGGGCTTCGGTGGAGGC
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