mRNA_H-canaliculatus_F_contig1026.274.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1026.274.1
Unique NamemRNA_H-canaliculatus_F_contig1026.274.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: D7FW32_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW32_ECTSI)

HSP 1 Score: 639 bits (1647), Expect = 8.420e-225
Identity = 320/375 (85.33%), Postives = 345/375 (92.00%), Query Frame = 1
Query:  136 MAVASDVAPLLSKEREDEPGGLWATKQYGDLKEGDRLRAADYVTGSVEVRQLRSVYKLSFTDVVRVNRFKPAGVQEVATVSDEGSDESVAALKRAEREQNASVRLYVFLTKKKAKTRMTDLEETAFLLRVDIGKEGCICFGESFGDFDQGMLQVPNPTGYKGIVIAKRKTDEPTTDEPIIFAYARIVQRRRPVPASEVMLGLAEDKDRVTRYTKAAPIVKSDNDLLKGVRKYARTARKAWEAMSIPEDQNIDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTTSYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDLFDKVDTDKSGVIEYEEFKQVWTRII 1260
            MA+ASDVAPLLSKER DEPGGLWATKQYGDLKEGDRLRAADYVTGSVEVRQLRSVYKLSFTD+ RVNRFKP   QE+A   DE SDESVAAL+RAEREQNASVRLYVFLTKKKAKTRM DLEETAFLLR+++GKEGCICFG++FG+F+QGMLQVPNPTGYKGI IAKRK DEP TDEPII+AYARIV +RRPV ASEV+LGLAEDKDRVTRY KAAP VK+D+DLLKGVRKY RTARKAWEAMSIPEDQ IDFEGFK A DELNLVI+EG+AL+LF+ACDL  TG IGVSELEVALM+HDVVPTTSYLTP+DSFNVFDLDGGGDISWVEFKEAAEVIA GKL E QTK+LFDKVDTDKSGVIEYEEFKQ W  ++
Sbjct:    1 MALASDVAPLLSKERADEPGGLWATKQYGDLKEGDRLRAADYVTGSVEVRQLRSVYKLSFTDIARVNRFKPVEAQEIAMAGDEESDESVAALRRAEREQNASVRLYVFLTKKKAKTRMADLEETAFLLRLEVGKEGCICFGDTFGNFEQGMLQVPNPTGYKGIAIAKRKADEPKTDEPIIYAYARIVPKRRPVVASEVVLGLAEDKDRVTRYAKAAPTVKTDDDLLKGVRKYTRTARKAWEAMSIPEDQGIDFEGFKLAFDELNLVIMEGRALQLFKACDLSGTGMIGVSELEVALMMHDVVPTTSYLTPLDSFNVFDLDGGGDISWVEFKEAAEVIAGGKLNEEQTKELFDKVDTDKSGVIEYEEFKQAWLAMV 375          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: A0A6H5JF42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF42_9PHAE)

HSP 1 Score: 635 bits (1637), Expect = 5.470e-216
Identity = 318/375 (84.80%), Postives = 345/375 (92.00%), Query Frame = 1
Query:  136 MAVASDVAPLLSKEREDEPGGLWATKQYGDLKEGDRLRAADYVTGSVEVRQLRSVYKLSFTDVVRVNRFKPAGVQEVATVSDEGSDESVAALKRAEREQNASVRLYVFLTKKKAKTRMTDLEETAFLLRVDIGKEGCICFGESFGDFDQGMLQVPNPTGYKGIVIAKRKTDEPTTDEPIIFAYARIVQRRRPVPASEVMLGLAEDKDRVTRYTKAAPIVKSDNDLLKGVRKYARTARKAWEAMSIPEDQNIDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTTSYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDLFDKVDTDKSGVIEYEEFKQVWTRII 1260
            MA+ASDVAPLLSKER DEPGGLWATKQYGDLKEGDRLRAADY+TGSVEVRQLRSVYKLSFTD+ RVNRFKPA  QE+A   DE SDESVAAL+R EREQNASVRLYVFLTKKKAKTRM DLEETAFLLR+++GKEGCICFG++FG+F+QGMLQVPNPTGYKGI IAKRK DEP TDEPII+AYARIV +RRPV ASEV+LGLAEDKDRVTRYTKAAP VK+D+DLLKGVRKY RTARKAWEAMSIPED+ IDFEGFK A DELNLVI+EG+AL+LF+ACDL  TG IGVSELEVALM+HDVVPTTS+LTP+DSFNVFDLDGGGDISWVEFKEAAEVIA GKL E QTK LFDKVDTDKSGVIEYEEFKQ W  ++
Sbjct:    1 MALASDVAPLLSKERADEPGGLWATKQYGDLKEGDRLRAADYITGSVEVRQLRSVYKLSFTDIARVNRFKPAEAQEIAMPGDEESDESVAALRRTEREQNASVRLYVFLTKKKAKTRMADLEETAFLLRLEVGKEGCICFGDTFGNFEQGMLQVPNPTGYKGIAIAKRKADEPKTDEPIIYAYARIVPKRRPVVASEVVLGLAEDKDRVTRYTKAAPTVKTDDDLLKGVRKYTRTARKAWEAMSIPEDKKIDFEGFKLAFDELNLVIMEGRALQLFKACDLSGTGMIGVSELEVALMMHDVVPTTSHLTPLDSFNVFDLDGGGDISWVEFKEAAEVIAGGKLNEEQTKGLFDKVDTDKSGVIEYEEFKQAWLAMV 375          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: A0A836CDR4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR4_9STRA)

HSP 1 Score: 224 bits (571), Expect = 5.380e-62
Identity = 145/408 (35.54%), Postives = 212/408 (51.96%), Query Frame = 1
Query:  169 SKEREDEPGGLWATKQYGDLKEGD--RLRAAD-------------------------YVTGSVEVRQLRSVYKLSFTDVV-----RVNRFKPAGVQEVATVSDEGSDESVAALKRAEREQNA------SVRLYVFLTKKKAKTRMTDLEETAFLLRVDIGKEGCICFGESFGDFDQGMLQVPNPTGYKGIVIAKRKTDEPTTDEPIIFAYARIVQRRRPVPASEVMLGLAEDKDRVTRY----TKAAPIVK-SDNDLLKGVRKYARTARKAWEAMSIPEDQNIDFEGFK-QALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTTSYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDLFDKVDTDKSGVIEYEEFKQVWTRII 1260
            S +R  EP GLW  +QYGD + GD  +LRAA                           VTGSVEVRQLRS+ KLSF ++        +    AG     T+S     +    L+ A  +  +      + +LY +LTKKK K RM DLEET FLL +D   +G IC   ++G FDQ +L VP+ + Y G VI KR  D P T+EP++  +AR++Q+RRP+ A+   LG+ +DKDRV R+    T  AP  K SD +L++ V+ YART++ AW+A+ +    + +   +  Q LD+LN+V++E +ALRLF+ CDL  TG IG++E E A+++    P  +  +  D                        +A   L E     L++K+     G + YE FKQ W  ++
Sbjct:   26 STKRAGEPDGLWVARQYGDFEPGDLRKLRAATATRGNTPAQAGDVPLSPHQQPDKELIVTGSVEVRQLRSMLKLSFVNLALQSASTKSEANAAGGSSTGTLSLRSGADLAEQLEAALSDTGSVGVEQWAPKLYCYLTKKKPKARMADLEETGFLLLMDSSSDGSICQAPAYGSFDQSLLHVPSASEYCGAVIVKRAQDAPVTEEPVVLGFARLLQQRRPLVAAAAALGMQDDKDRVQRFDATKTDTAPATKKSDKELMRDVKMYARTSKMAWQALCVQVHFSHNSHMYLIQGLDQLNIVVLESRALRLFQQCDLQGTGRIGLTEFEAAMVLGGSRPKRNDASNAD------------------------LAHDPLNEVALLALYNKMLPSPYGEMAYEHFKQAWLELV 409          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: A0A8J2X2P9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2P9_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.890e-50
Identity = 128/385 (33.25%), Postives = 192/385 (49.87%), Query Frame = 1
Query:  163 LLSKEREDEPGGLWATKQYGDLKEGDRLRAADYVTGSVEVRQLRSVYKLSFTDVVRVNRFKPAGVQEVATVSDEGSDESVAALKRAEREQNASVRLYVFLTKKKAKTRMTDLEETAFLLRV--DIGKEGCICFGES-FGDFDQGMLQVP-NPTGYKGIVIAKRKTDEPTTDEPIIFAYARIVQRRRPVPASEVMLGLAEDKDRVTRYTKAAPIVKSDNDL-LKGVRKYARTA----RKAWEAMSIPEDQNIDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTTSYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKD----------LFDKVDTDKSGVIEYEEFKQVWTRII 1260
            +LS ER     GLW  ++YGD   GD+  A  +VTG VE+RQL  ++KLSF                          + +A  + A+    + ++  VFLT+KKAK RM DLEET + + +  D+ K G +C G++  G FD  +   P NP  Y+G+ IAK   D P T+EP ++ + R V  R  +  +E +LGL E++D +   T    I+    D   K ++ Y RTA    RKAW+A+ + E+Q I F+ FK+ALD L+L ++E +A+                       MI+D  P    LTP D+F +FDLD  G I+   F+     +  G+    +T D           FDK+D D+SG I Y  F+  W +++
Sbjct:   10 ILSSERAQLVDGLWTIQKYGDFAPGDKRLARVFVTGRVEMRQLGGLFKLSF--------------------------DGLAVQRLADNPSQSPLKAKVFLTRKKAKKRMADLEETGYSVPISRDLDKNGFVCSGDATLGTFDLTLRNAPDNPLLYRGLCIAKSAQDTPLTEEPAVYGFVRFVDDRPQITTTENVLGLHENEDLMGNKT----IMHDGTDSKYKPIQAYTRTALRRARKAWKALELAEEQQIGFDEFKRALDLLDLTLLETRAMXXXXXXXXXXXXXXXXXXXXXXXMINDSTPDLG-LTPNDAFRMFDLDQTGKITKTAFRRVIGALGAGEKLPGKTVDSEERKMAIEAFFDKLDLDRSGEISYTTFRSAWVKLV 363          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: A0A2R5GPP8_9STRA (Leucine-rich repeat-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPP8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.680e-25
Identity = 68/233 (29.18%), Postives = 117/233 (50.21%), Query Frame = 1
Query:  553 FGESFGDFDQGM-LQVPNPTGYKGIVIAKRKTDEPTTDEPIIFAYARIVQRRRPVPASEVMLGLAEDKDRVTRYTKAAPIVKSDNDLLKGVRKYARTARKAWEAMSIPEDQNIDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTTSYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDLFDKVDTDKSGVIEYEEFKQVW 1248
            FG++  +FD      V +P  + G+ + K    +P +  P +  YA++         ++      ++ + +    ++A   +       G+R   R  R             IDFE FK A++ L L + E +  +LF+ACDL R+GT+ + EL +AL I+D +   + +TP D+F +FD DG G I+  EF E   ++    +T  +   +F + DTD SG IEY+EF+++W
Sbjct:  278 FGDTCFEFDSEFPTMVSSPLEWTGVALVKCAETKPVSLYPAVLFYAKLAVIHEKKKTAKKKADAVKEAENIQEKMRSATTWEPGL----GLRTIRRLLRSKLRYFDRNGSNTIDFEEFKAAMENLGLFLTETRLQKLFQACDLDRSGTVELDELPLALHINDQLRVRTRMTPRDAFELFDYDGSGSINEQEFFEVVNLLPVASMTRERAGKVFARHDTDNSGEIEYDEFREIW 506          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: A0A7R9U7B5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7B5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.360e-20
Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query:  613 YKGIVIAKRKTDEPTTDEPIIFAYARIVQRRRPVPASEVMLGLAEDKDRVTRYTKAAPIVKSDNDLLKGVRKYARTARKAWEAMSIPEDQNIDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGV 1002
            + G VI K K + P + EP+I+A+AR+   RRP+P ++V LG+A DKD + R  +      S    L+ +  YAR A+KAW  +   ED+ + F  FK+ALD L+++++E +A +LF   +L   G +G+
Sbjct:    5 FVGCVIIKPKAEAPLSKEPVIYAFARLAYERRPLPQTDVRLGIALDKDEIARIRRLGA---SGKHRLRSLGFYARNAKKAWRDLDKAEDEPLSFIEFKRALDRLDILVLESRAKKLFGLNNLDGAGALGM 131          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: A0A6A5AEZ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AEZ5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.740e-15
Identity = 58/182 (31.87%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  742 AEDKDRVTRYTKAAPIVKSDNDLLKGVRKYARTARKAWEAMSIPEDQN----IDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTT---------SYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDLFDKVDTDKSGVIEYEEFKQVW 1248
            ++D   + RY +    V  D+++ K     A  ++   E M +  D++    I  + F + L +L + + + +A+R+F+ CD   +G I + E ++A+ + D  PTT         S LTP D+F++FD +G G +  +EF +A E      +T+A+ + LF K DTDKSG IEY EF+ +W
Sbjct:   22 SDDDAAIERYDRDD--VSEDDEVYKSRNVDALLSKMTPEEMFVKFDEDHSGMISTDEFLKMLPQLGIKLSDAKAIRIFDTCDKDGSGEIDMEEFKMAMFMVD--PTTGNSLGFSPSSLLTPKDAFHLFDSNGSGQLDELEFADALEYFGFS-VTDAKQERLFLKYDTDKSGFIEYSEFRAMW 198          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: W4H9F4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9F4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.170e-14
Identity = 58/182 (31.87%), Postives = 99/182 (54.40%), Query Frame = 1
Query:  742 AEDKDRVTRYTKAAPIVKSDNDLLKGVRKYARTARKAWEAMSIPEDQN----IDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTT---------SYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDLFDKVDTDKSGVIEYEEFKQVW 1248
            ++D   + RY +    V  D+++ K     A  ++   E M +  D++    I  + F + L +L + + + +A+R+F+ CD   +G I + E ++A+ + D  PTT         S LTP D+F++FD +G G +  +EF +A E      +T+A+ + LF K DTDKSG IEY EF+ +W
Sbjct:   60 SDDDAAIERYDRDD--VSEDDEVYKSRNVDALLSKMTPEEMFVKFDEDHSGMISTDEFLKMLPQLGIKLSDAKAIRIFDTCDKDGSGEIDMEEFKMAMFMVD--PTTGNSLGFSPSSLLTPKDAFHLFDSNGSGQLDELEFADALEYFGFS-VTDAKQERLFLKYDTDKSGFIEYSEFRAMW 236          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: A0A024UUX4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUX4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.760e-14
Identity = 48/130 (36.92%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  886 IDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTT---------SYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDLFDKVDTDKSGVIEYEEFKQVW 1248
            I  + F + L +L + + + +A+R+F+ CD   +G I + E ++A+   D  PTT         S LTP D+F++FD +G G +  +EF +A E     ++T+A+ + LF K DTDKSG IEY EF+ +W
Sbjct:  116 ISTDEFIKMLPQLGIKLSDAKAIRIFDTCDKDGSGEIDLEEFKMAMFTVD--PTTGNSLGFSPSSLLTPKDTFHLFDSNGSGQLDELEFADALEYFGF-RVTDAKQERLFQKYDTDKSGFIEYSEFRAMW 242          
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Match: A0A6G0XXD3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXD3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.660e-13
Identity = 49/136 (36.03%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  874 EDQN--IDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHDVVPTT---------SYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDLFDKVDTDKSGVIEYEEFKQVW 1248
            EDQ+  I  + F + L +L + +   +A+R+F++CD   +G I + E ++A+   D  P T         S LTP D+F++FD +G G +  +EF +A E      +++A+ + LF K DTDKSG IEY EF+ +W
Sbjct:  107 EDQSGMISRDEFVKMLPQLGIKLSNAKAIRIFDSCDKDGSGEIDLEEFKMAMFAVD--PNTGNTLGFAPSSLLTPKDAFHLFDSNGSGKLDELEFADALEYFGMD-VSDAKQEKLFHKYDTDKSGFIEYSEFRAMW 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1026.274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW32_ECTSI8.420e-22585.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JF42_9PHAE5.470e-21684.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDR4_9STRA5.380e-6235.54EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A8J2X2P9_9STRA1.890e-5033.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R5GPP8_9STRA4.680e-2529.18Leucine-rich repeat-containing protein 1 n=1 Tax=H... [more]
A0A7R9U7B5_9STRA3.360e-2037.69Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6A5AEZ5_9STRA4.740e-1531.87Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4H9F4_9STRA1.170e-1431.87Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UUX4_9STRA2.760e-1436.92Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XXD3_9STRA2.660e-1336.03Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1026contigH-canaliculatus_F_contig1026:28078..31142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score644.0
Seed ortholog evalue4.2e-182
Seed eggNOG ortholog2880.D7FW32
KEGG rclassRC00586
KEGG koko:K01736,ko:K11414
KEGG ReactionR01714
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC4.2.3.5
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size1263
Cds size1128
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928659.2137842-UTR-H-canaliculatus_F_contig1026:28077..282121622928659.2137842-UTR-H-canaliculatus_F_contig1026:28077..28212Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1026 28078..28212 +
1696845516.2544703-UTR-H-canaliculatus_F_contig1026:28077..282121696845516.2544703-UTR-H-canaliculatus_F_contig1026:28077..28212Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1026 28078..28212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928659.2246153-CDS-H-canaliculatus_F_contig1026:28212..283081622928659.2246153-CDS-H-canaliculatus_F_contig1026:28212..28308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 28213..28308 +
1696845516.2683687-CDS-H-canaliculatus_F_contig1026:28212..283081696845516.2683687-CDS-H-canaliculatus_F_contig1026:28212..28308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 28213..28308 +
1622928659.2351668-CDS-H-canaliculatus_F_contig1026:28664..290151622928659.2351668-CDS-H-canaliculatus_F_contig1026:28664..29015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 28665..29015 +
1696845516.2792425-CDS-H-canaliculatus_F_contig1026:28664..290151696845516.2792425-CDS-H-canaliculatus_F_contig1026:28664..29015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 28665..29015 +
1622928659.247677-CDS-H-canaliculatus_F_contig1026:29387..295721622928659.247677-CDS-H-canaliculatus_F_contig1026:29387..29572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 29388..29572 +
1696845516.2891827-CDS-H-canaliculatus_F_contig1026:29387..295721696845516.2891827-CDS-H-canaliculatus_F_contig1026:29387..29572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 29388..29572 +
1622928659.2576325-CDS-H-canaliculatus_F_contig1026:29706..298371622928659.2576325-CDS-H-canaliculatus_F_contig1026:29706..29837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 29707..29837 +
1696845516.300063-CDS-H-canaliculatus_F_contig1026:29706..298371696845516.300063-CDS-H-canaliculatus_F_contig1026:29706..29837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 29707..29837 +
1622928659.2674875-CDS-H-canaliculatus_F_contig1026:30162..303921622928659.2674875-CDS-H-canaliculatus_F_contig1026:30162..30392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 30163..30392 +
1696845516.3089888-CDS-H-canaliculatus_F_contig1026:30162..303921696845516.3089888-CDS-H-canaliculatus_F_contig1026:30162..30392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 30163..30392 +
1622928659.2818367-CDS-H-canaliculatus_F_contig1026:31007..311421622928659.2818367-CDS-H-canaliculatus_F_contig1026:31007..31142Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 31008..31142 +
1696845516.3194087-CDS-H-canaliculatus_F_contig1026:31007..311421696845516.3194087-CDS-H-canaliculatus_F_contig1026:31007..31142Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1026 31008..31142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1026.274.1prot_H-canaliculatus_F_contig1026.274.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1026 28213..31142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1026.274.1

>prot_H-canaliculatus_F_contig1026.274.1 ID=prot_H-canaliculatus_F_contig1026.274.1|Name=mRNA_H-canaliculatus_F_contig1026.274.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=376bp
MAVASDVAPLLSKEREDEPGGLWATKQYGDLKEGDRLRAADYVTGSVEVR
QLRSVYKLSFTDVVRVNRFKPAGVQEVATVSDEGSDESVAALKRAEREQN
ASVRLYVFLTKKKAKTRMTDLEETAFLLRVDIGKEGCICFGESFGDFDQG
MLQVPNPTGYKGIVIAKRKTDEPTTDEPIIFAYARIVQRRRPVPASEVML
GLAEDKDRVTRYTKAAPIVKSDNDLLKGVRKYARTARKAWEAMSIPEDQN
IDFEGFKQALDELNLVIVEGQALRLFEACDLGRTGTIGVSELEVALMIHD
VVPTTSYLTPMDSFNVFDLDGGGDISWVEFKEAAEVIARGKLTEAQTKDL
FDKVDTDKSGVIEYEEFKQVWTRII*
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mRNA from alignment at H-canaliculatus_F_contig1026:28078..31142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1026.274.1 ID=mRNA_H-canaliculatus_F_contig1026.274.1|Name=mRNA_H-canaliculatus_F_contig1026.274.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3065bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1026:28078..31142+ (Hapterophycus canaliculatus Oshoro5f female)
CCCTACTTGTATCCCCAGTCCCCAATCCCGAATCCATAATATCCGTATAG TACCGAATTGGCGGCTCTCACGGAGGCTTCGATAGGCGGAGAGATTCGGC GAGTAATTCATTCCTCCTTGTTCCCAGCTGTTCCCATGGCTGTTGCCAGC GATGTGGCCCCTTTATTGTCGAAAGAAAGGGAAGACGAGCCAGGTGGTTT GTGGGCAACCAAACAATACGGCGACCTGAAGGTGAGATGGTTGCATGCTC CCTTAGCATGTTCGGTCGTTAAGTGGGTTGTATGAAAGCGCGTTCTTTTC ACGAACACATCATTCATCTCAGTTCAGTCTACACATGTCTGAGTGAAGCA TTTTTGGTGGAATTTCTTACCGGCTGCGCCGCGTTGCTTCGCTTCGCCAT GTGAACGATGACGAATTGGTCGACCCGTCCGGACTGCCTGTGGCCTGAGA AAAAACAAACAAGCACCTCGTGGCGAGGAAAAGATACTGCGCATGTTTCG TGTATTTTTGCAAATGTATCCGTCAATACGAATGTAACTGGTGCGCGATG GGGCCTTGAAAATCCGCACACGTCTCTACAATCACAGGAGGGCGACCGCT TGCGTGCCGCAGACTACGTCACCGGCAGCGTGGAGGTGCGGCAACTTCGA TCTGTTTACAAGCTGAGCTTCACAGATGTTGTTCGCGTTAACCGCTTTAA ACCCGCTGGAGTGCAAGAGGTGGCCACGGTAAGCGATGAAGGAAGTGACG AGAGCGTGGCGGCGCTCAAGAGAGCCGAAAGAGAGCAGAACGCCAGCGTC CGGCTGTACGTGTTTCTCACGAAAAAGAAGGCGAAGACGAGGATGACGGA CTTAGAGGAGACTGCCTTTCTGCTGCGAGTAGACATCGGAAAGGAGGGGT GCATCTGCTTTGGCGAGAGTTTCGGAGACTTCGACCAGGTACGCGTAACA AGTTGAATTTGAACGCCATGCCCTGTACTCCAGCAAGCCCGAAATCGACG GGACAAAAAAACTCCGAGTGAGTGCCGAACTTCCAGAAGGAGCACCCTCC GATACATGCCTTGAGCTTTGTTGAATAACGTGCAGTGACTTTTGGTTGGA GCTCGTCGTTTTTGTAACTCTGTCACATACCGAGTGCTCGTACTGTGAAA TGTTGCTCATGTTGACAAACGTTCTTATACAGCAGTCAACGAGATGTTGC TTTTACGACTTACCTGTTTTGCACATGATCGGTTTGCATCGTTTGAAACA ATTACACCTTTGAGAGCTTGAGTGAACTGAGATCGTTTTACCAACAAATC ATCGGCGCAGGGTATGCTACAAGTCCCCAACCCCACGGGGTACAAAGGCA TCGTCATAGCTAAAAGAAAGACTGACGAGCCTACAACGGATGAGCCAATC ATCTTTGCGTACGCCAGGATTGTCCAGAGGCGGAGGCCAGTCCCGGCGTC AGAGGTTATGCTCGGACTGGCAGAAGACAAAGATCGAGTCACCAGGTATT GGTTCATGACTCACAGACAACGAAACTTCGTACTGTATGGAGACGACGAA GTGTATCTTGAACAATCGTCGTGCCGCTAGCAGTACATTGCCCATTTATG ACGGCACGAATCCCTAAAATGAATGGCAGGTACACGAAAGCAGCACCAAT TGTAAAAAGCGATAACGACCTGCTCAAAGGCGTGCGCAAGTACGCTCGAA CGGCGCGGAAGGCGTGGGAAGCGATGTCCATTCCGGAGGACCAAAACATC GACTTTGAAGGTGAAATCCATAACACGCCAGCGCAACTGCAATGGAGGCT TTCGACATGTGACGAAAAATGATCATTTTTGGTATCAATGTGTCCGGATC ACAGCATCGACGTGGCTTGGTAGATATTCCATCATACAAGAGGCCGTTCC ATGCACCAATAATATTGTATTGACTCCGCTCATCACTCGCACCGCACCCG AAAGCTCGAGGTCGTGCTTAATCAGGGTCCATGATTGGAATTCACGCTGT CGTTAAGTTATCCACTTTCCCAACGATGGAACGTCCTTTCGAGTACAAGT TTGCACTGTTGCTACGTCCCCCATCAACGTTACAGGCTTCAAGCAAGCGC TCGACGAGTTAAACTTGGTAATCGTGGAGGGACAAGCCTTGCGGCTCTTC GAAGCCTGTGATTTGGGTAGGACAGGAACGATCGGAGTTTCGGAGCTAGA GGTAGCGCTCATGATACACGACGTGGTACCCACGACGTCTTACCTGACTC CCATGGACTCCTTCAACGTCTTCGATCTCGACGGTGGGGGCGACATTTCC TGGGTAGAGTTCAAGGTACGCTTACACGCAACGAGCCTCCACCAATTTGA GCTGAGTGAAGTGACGAGACAGAGTGGAAGGGTATGAGCACTGTGGGCTC CACTACTACACATTCTACAACCATCATGGTATACGTTATTCAGGAAGTCA TCATCGGTTCTTCAGGTTGGCTCCGACTTCGCGCTCAATGTTGCACAAAA TGCACATGTTGTTTGAAACTGGATACTGTCGGGCTTCCCATACGTGAATC CTCTAGAGACGCAATACGATTGGGAAAACTCAAAAATAGATTGCTAGTAT ACGAAACTCGAAGCCAGCAACAAAAAATAGATACACAGGAGGAATGTGTT GCGCTCAAAATATCGGAGCTTAAATGGAAGGAGGATAATCGAAAATCCCT CCATTTCCAGTTAGTTCATTTCGTTGCGATATAATGTTTGTCTGAGAGCT ATATATCATCAATAAAACTCGCCAAACGAATAATTATTCTGCTCATGCTT TTGTCCCAAGCCTACACATCAATGAACCCTTTTTGTTTGGAGCTCAACAG AAGCCTCGAGCTACGCCTCAGACGACGTGCCTCAGGAGGTGCTCCGACGG TGTTGTTGTTTTTTTCTTTTGCTATGGCAGGAAGCTGCCGAGGTTATCGC GAGGGGCAAACTCACGGAGGCGCAAACAAAGGACTTGTTCGACAAGGTCG ACACTGACAAAAGCGGGGTAATTGAGTACGAAGAATTCAAGCAGGTATGG ACACGCATCATATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1026:28078..31142+

>mRNA_H-canaliculatus_F_contig1026.274.1 ID=mRNA_H-canaliculatus_F_contig1026.274.1|Name=mRNA_H-canaliculatus_F_contig1026.274.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2256bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1026:28078..31142+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTGTTGCCAGCGATGTGGCCCCTTTATTGTCGAAAGAAAGGGAAGA
CGAGCCAGGTGGTTTGTGGGCAACCAAACAATACGGCGACCTGAAGATGG
CTGTTGCCAGCGATGTGGCCCCTTTATTGTCGAAAGAAAGGGAAGACGAG
CCAGGTGGTTTGTGGGCAACCAAACAATACGGCGACCTGAAGGAGGGCGA
CCGCTTGCGTGCCGCAGACTACGTCACCGGCAGCGTGGAGGTGCGGCAAC
TTCGATCTGTTTACAAGCTGAGCTTCACAGATGTTGTTCGCGTTAACCGC
TTTAAACCCGCTGGAGTGCAAGAGGTGGCCACGGTAAGCGATGAAGGAAG
TGACGAGAGCGTGGCGGCGCTCAAGAGAGCCGAAAGAGAGCAGAACGCCA
GCGTCCGGCTGTACGTGTTTCTCACGAAAAAGAAGGCGAAGACGAGGATG
ACGGACTTAGAGGAGACTGCCTTTCTGCTGCGAGTAGACATCGGAAAGGA
GGGGTGCATCTGCTTTGGCGAGAGTTTCGGAGACTTCGACCAGGAGGGCG
ACCGCTTGCGTGCCGCAGACTACGTCACCGGCAGCGTGGAGGTGCGGCAA
CTTCGATCTGTTTACAAGCTGAGCTTCACAGATGTTGTTCGCGTTAACCG
CTTTAAACCCGCTGGAGTGCAAGAGGTGGCCACGGTAAGCGATGAAGGAA
GTGACGAGAGCGTGGCGGCGCTCAAGAGAGCCGAAAGAGAGCAGAACGCC
AGCGTCCGGCTGTACGTGTTTCTCACGAAAAAGAAGGCGAAGACGAGGAT
GACGGACTTAGAGGAGACTGCCTTTCTGCTGCGAGTAGACATCGGAAAGG
AGGGGTGCATCTGCTTTGGCGAGAGTTTCGGAGACTTCGACCAGGGTATG
CTACAAGTCCCCAACCCCACGGGGTACAAAGGCATCGTCATAGCTAAAAG
AAAGACTGACGAGCCTACAACGGATGAGCCAATCATCTTTGCGTACGCCA
GGATTGTCCAGAGGCGGAGGCCAGTCCCGGCGTCAGAGGTTATGCTCGGA
CTGGCAGAAGACAAAGATCGAGTCACCAGGGTATGCTACAAGTCCCCAAC
CCCACGGGGTACAAAGGCATCGTCATAGCTAAAAGAAAGACTGACGAGCC
TACAACGGATGAGCCAATCATCTTTGCGTACGCCAGGATTGTCCAGAGGC
GGAGGCCAGTCCCGGCGTCAGAGGTTATGCTCGGACTGGCAGAAGACAAA
GATCGAGTCACCAGGTACACGAAAGCAGCACCAATTGTAAAAAGCGATAA
CGACCTGCTCAAAGGCGTGCGCAAGTACGCTCGAACGGCGCGGAAGGCGT
GGGAAGCGATGTCCATTCCGGAGGACCAAAACATCGACTTTGAAGGTACA
CGAAAGCAGCACCAATTGTAAAAAGCGATAACGACCTGCTCAAAGGCGTG
CGCAAGTACGCTCGAACGGCGCGGAAGGCGTGGGAAGCGATGTCCATTCC
GGAGGACCAAAACATCGACTTTGAAGGCTTCAAGCAAGCGCTCGACGAGT
TAAACTTGGTAATCGTGGAGGGACAAGCCTTGCGGCTCTTCGAAGCCTGT
GATTTGGGTAGGACAGGAACGATCGGAGTTTCGGAGCTAGAGGTAGCGCT
CATGATACACGACGTGGTACCCACGACGTCTTACCTGACTCCCATGGACT
CCTTCAACGTCTTCGATCTCGACGGTGGGGGCGACATTTCCTGGGTAGAG
TTCAAGGCTTCAAGCAAGCGCTCGACGAGTTAAACTTGGTAATCGTGGAG
GGACAAGCCTTGCGGCTCTTCGAAGCCTGTGATTTGGGTAGGACAGGAAC
GATCGGAGTTTCGGAGCTAGAGGTAGCGCTCATGATACACGACGTGGTAC
CCACGACGTCTTACCTGACTCCCATGGACTCCTTCAACGTCTTCGATCTC
GACGGTGGGGGCGACATTTCCTGGGTAGAGTTCAAGGAAGCTGCCGAGGT
TATCGCGAGGGGCAAACTCACGGAGGCGCAAACAAAGGACTTGTTCGACA
AGGTCGACACTGACAAAAGCGGGGTAATTGAGTACGAAGAATTCAAGCAG
GTATGGACACGCATCATATGAGAAGCTGCCGAGGTTATCGCGAGGGGCAA
ACTCACGGAGGCGCAAACAAAGGACTTGTTCGACAAGGTCGACACTGACA
AAAGCGGGGTAATTGAGTACGAAGAATTCAAGCAGGTATGGACACGCATC
ATATGA
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