mRNA_H-canaliculatus_F_contig10257.267.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10257.267.1
Unique NamemRNA_H-canaliculatus_F_contig10257.267.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: A0A6H5JRH9_9PHAE (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRH9_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 2.260e-116
Identity = 189/250 (75.60%), Postives = 206/250 (82.40%), Query Frame = 1 
Query:    1 MKMTSRAFMLSAALATSTRHGGRGGVSAFVRSAPAAVLGRLRTSTSQ-KSTFAGKALPA-VAPRTSPVAF--CESGGGGSRSGNAMGMLFSNPFKKKEIDYEELEGAAEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRSRPL 738
            MKMTSR FMLSAALA STR  GR GVSAF      AVLGRLR S++   S+FAGKALPA VAPR+SPVA   C  G  GSR  N+MGM+FSNPFKKKE++YEELEG A EAA++ALKGEVPSKSE G DIATFAGGCFWGLELAFQRVPGVV TSVGYTQG VEKPTYGEVCSG+TGHTEAVQV+YNPSEV+FEELC VFFGRINPTQVNGQG DRGTQYRTG+YPHTKEQ DV   V   L  +  +P+
Sbjct:    1 MKMTSRVFMLSAALAASTR--GRNGVSAF------AVLGRLRPSSAAGASSFAGKALPAAVAPRSSPVAAFTCADGSRGSR--NSMGMMFSNPFKKKEVNYEELEGGAAEAARAALKGEVPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGADRGTQYRTGIYPHTKEQSDVALKVMDELRGNYKQPI 240
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: A0A835Z6G6_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G6_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.930e-62
Identity = 100/163 (61.35%), Postives = 126/163 (77.30%), Query Frame = 1 
Query:  250 MLFSNPFKKKEIDYEELEGAAEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRSRPL 738
            MLF   F KK +DY  L+G+A EAAK+AL  +VP+KSE G DIATFAGGCFWG EL FQRVPGV+ T VGYTQG+V++P+Y +VCSG+TGHTE  QV+Y+P +V+++ L   FF R++PTQVNGQG DRGTQYR+GVY HT EQ+   + V   LA+  SRP+
Sbjct:   65 MLFG-AFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPI 226
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: A0A6T5PGW5_HETAK (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PGW5_HETAK)

HSP 1 Score: 206 bits (524), Expect = 3.860e-61
Identity = 107/176 (60.80%), Postives = 126/176 (71.59%), Query Frame = 1 
Query:  229 RSGNAMGMLF-----SNPFKKKEIDYEE-LEGAAEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRSRPL 738
            R+  +M M+F     +NP      +Y   LEGAA E  ++A+ GEVP+ S+ G  IATFAGGCFWGLELAFQRVPGVV TSVGYTQG  E+PTY  VCSGATGHTEAVQV+YNP EV+F +LCNVFF R NPT VNGQG D GTQYRTGVY HT +Q    ++V   L    S+P+
Sbjct:   62 RAVRSMAMIFDKIFGNNPGPPDVANYYGVLEGAAREQGEAAIAGEVPATSKAGHAIATFAGGCFWGLELAFQRVPGVVETSVGYTQGAQERPTYSGVCSGATGHTEAVQVYYNPEEVSFTQLCNVFFERTNPTTVNGQGNDFGTQYRTGVYTHTDQQMIEAQAVFTELKGKYSKPI 237
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: K8Z531_NANGC (Peptide-methionine (S)-S-oxide reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z531_NANGC)

HSP 1 Score: 182 bits (463), Expect = 4.340e-53
Identity = 88/150 (58.67%), Postives = 107/150 (71.33%), Query Frame = 1 
Query:  289 YEELEGAAEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRSRPL 738
            Y++L G A EA+K+AL   VP+ S  G  IATFAGGCFWG+ELAFQRVPGVV T  GYTQG V +P+Y EVCSG TGHTEA+QV + P+EV++E+L  VF+ RI+P   NGQGGDRGTQYRTG+Y HT  Q            +  SRP+
Sbjct:    6 YQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPI 155
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: A0A4D9CTX0_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTX0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.320e-51
Identity = 93/163 (57.06%), Postives = 114/163 (69.94%), Query Frame = 1 
Query:  253 LFSNPFKKKEIDYEELEGA-AEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRSRPL 738
            +F+   K   IDY  L G  A+EAA+ ALKG V  KS+ G +IATFAGGCFWGLELA+QRV GV+ TSVGYTQG+ EKPTY  VCSG +GHTEAVQVF++P EV++E LC +   RINPT  N  G DRGTQYR G+Y H + Q+ V + V        S+P+
Sbjct:   69 IFNAAGKGDGIDYSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPI 231
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: A0A7S2BLV3_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BLV3_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.190e-51
Identity = 94/153 (61.44%), Postives = 108/153 (70.59%), Query Frame = 1 
Query:  241 AMGMLFS--NPFKKKEIDYEELEG----AAEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQ 681
            AMG L +   P    EIDY  L G    AA EA K AL G VP+KSE G  IATFAGGCFWG+ELA+QRVPGV+ T VGYTQGE  KPTY EV +G+TGHTEA+QVFY+P  V FE L  +   RINPT++N  G D GTQYR+G+Y HT EQ
Sbjct:   49 AMGFLENIFGPPPSAEIDYGALTGLPDSAALEAGKHALAGAVPAKSEDGYAIATFAGGCFWGIELAYQRVPGVIATCVGYTQGETSKPTYKEVSTGSTGHTEALQVFYDPKAVDFEALVLLLQSRINPTEINRSGADVGTQYRSGIYCHTDEQ 201
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: W7TQD7_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD7_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.770e-50
Identity = 93/163 (57.06%), Postives = 114/163 (69.94%), Query Frame = 1 
Query:  253 LFSNPFKKKEIDYEELEGA-AEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRSRPL 738
            +F+   K   IDY  L G  A+EAA+ ALKG V  KS+ G +IATFAGGCFWGLELA+QRV GV+ TSVGYTQG+ EKPTY  VCSG +GHTEAVQVF++P EV++E LC +   RINPT  N  G DRGTQYR G+Y H + Q+ V + V        S+P+
Sbjct:   69 IFNAAGKGDGIDYSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPI 231
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: L1JZF2_GUITC (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JZF2_GUITC)

HSP 1 Score: 172 bits (435), Expect = 9.970e-49
Identity = 84/149 (56.38%), Postives = 108/149 (72.48%), Query Frame = 1 
Query:  244 MGMLFSNPFKKKEIDYEELEGA--AEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQK 684
            +G LF    K+   +Y +L+    A EAA+ A +G+V S S+ G  IATF GGCFWG+EL +QRVPGVV T+VGY QGE+E P+Y  VC+GATGHTE VQ+ YNP EV+F++LC V FG+INP+  +  G DRG+QYR G+Y HT EQK
Sbjct:    4 LGSLFGGSGKR---EYSDLKAGTWAAEAAEYAKEGQVKSVSKAGHSIATFGGGCFWGIELVYQRVPGVVATAVGYAQGELEHPSYEMVCTGATGHTEVVQLTYNPKEVSFKQLCQVLFGKINPSLKDQVGNDRGSQYRHGIYFHTPEQK 149
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BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: A0A7S2RMP4_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMP4_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.550e-48
Identity = 99/216 (45.83%), Postives = 124/216 (57.41%), Query Frame = 1 
Query:  151 FAGKALPAVAPRTSPVAFCESGGGGSRSGNAMGMLFSNPFKKKE------IDYEELEGA----AEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRSRPLCAARGRGFLF 768
            F G  +      TS V     G  G     A  M F + FK  E      I+Y+ L G     A EAA+ A+  E PSKS+ G  I TFAGGCFWGLELA+QRVPGVV T VGYTQG +E+PTY EVCS  +GHTEA+Q+ Y+PS VT+ ELC + F RI+PT  +  G D G QYR G+YPHT E+  V +          +RP+     +  +F
Sbjct:   55 FRGAMIRGSGGATSAVPSARQGRAG-----ATRMFFGDLFKAPELGSGPRINYDTLAGLPASFAREAAEYAMAKEAPSKSKDGHSITTFAGGCFWGLELAYQRVPGVVATCVGYTQGHLEQPTYKEVCSAMSGHTEAIQLTYDPSVVTYRELCELLFTRIDPTAKDRVGNDFGPQYRHGIYPHTDEEMAVAQQFIEDNQSKFNRPIVTECKKAVVF 265
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Match: A0A7S4K616_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K616_9STRA)

HSP 1 Score: 171 bits (434), Expect = 8.780e-48
Identity = 89/165 (53.94%), Postives = 118/165 (71.52%), Query Frame = 1 
Query:  253 LFSNPFKKKEIDYEELEGAAEEAAKSALKGEVPSKSEGGQDI--ATFAGGCFWGLELAFQRVPGVVGTSVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRS-RPL 738
             F     + +IDYE+L     E A++AL+G V + SE    +  ATFAGGCFWGLEL FQR+PGVV T+VGYTQG  E+PTY +V +GATGHTEAV V+Y+P +V++E L + FF R++PT VNGQG DRG QYRTGVY + ++Q+ + R+     AR+RS RP+
Sbjct:   67 FFGGGAYESKIDYEDLPHPCPELARAALEGRVVAVSEREPSLRAATFAGGCFWGLELYFQRLPGVVHTAVGYTQGREEEPTYDQVSAGATGHTEAVVVYYDPVDVSYEGLLDAFFERVDPTTVNGQGNDRGRQYRTGVYFNDEDQEGMARARFDEQARNRSPRPI 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10257.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRH9_9PHAE2.260e-11675.60Peptide-methionine (S)-S-oxide reductase n=2 Tax=E... [more]
A0A835Z6G6_9STRA4.930e-6261.35Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]
A0A6T5PGW5_HETAK3.860e-6160.80Peptide-methionine (S)-S-oxide reductase n=1 Tax=H... [more]
K8Z531_NANGC4.340e-5358.67Peptide-methionine (S)-S-oxide reductase n=3 Tax=M... [more]
A0A4D9CTX0_9STRA3.320e-5157.06Peptide-methionine (S)-S-oxide reductase n=1 Tax=N... [more]
A0A7S2BLV3_9STRA7.190e-5161.44Peptide-methionine (S)-S-oxide reductase n=1 Tax=F... [more]
W7TQD7_9STRA3.770e-5057.06Peptide-methionine (S)-S-oxide reductase n=1 Tax=N... [more]
L1JZF2_GUITC9.970e-4956.38Peptide-methionine (S)-S-oxide reductase n=2 Tax=G... [more]
A0A7S2RMP4_9STRA1.550e-4845.83Peptide-methionine (S)-S-oxide reductase n=1 Tax=R... [more]
A0A7S4K616_9STRA8.780e-4853.94Peptide-methionine (S)-S-oxide reductase n=1 Tax=O... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10257contigH-canaliculatus_F_contig10257:536..4941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.8
Seed ortholog evalue5.3e-93
Seed eggNOG ortholog2880.D7FRP8
Preferred nameMSRA4
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,KOG1635@2759
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-00_003370.1
Exons6
Model size1034
Cds size960
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928655.4388516-CDS-H-canaliculatus_F_contig10257:535..5721622928655.4388516-CDS-H-canaliculatus_F_contig10257:535..572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 536..572 +
1696845515.6177702-CDS-H-canaliculatus_F_contig10257:535..5721696845515.6177702-CDS-H-canaliculatus_F_contig10257:535..572Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 536..572 +
1622928655.4508822-CDS-H-canaliculatus_F_contig10257:1058..12331622928655.4508822-CDS-H-canaliculatus_F_contig10257:1058..1233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 1059..1233 +
1696845515.6294897-CDS-H-canaliculatus_F_contig10257:1058..12331696845515.6294897-CDS-H-canaliculatus_F_contig10257:1058..1233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 1059..1233 +
1622928655.4626787-CDS-H-canaliculatus_F_contig10257:2891..30241622928655.4626787-CDS-H-canaliculatus_F_contig10257:2891..3024Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 2892..3024 +
1696845515.6381726-CDS-H-canaliculatus_F_contig10257:2891..30241696845515.6381726-CDS-H-canaliculatus_F_contig10257:2891..3024Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 2892..3024 +
1622928655.47231-CDS-H-canaliculatus_F_contig10257:3428..34871622928655.47231-CDS-H-canaliculatus_F_contig10257:3428..3487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 3429..3487 +
1696845515.6492379-CDS-H-canaliculatus_F_contig10257:3428..34871696845515.6492379-CDS-H-canaliculatus_F_contig10257:3428..3487Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 3429..3487 +
1622928655.4864445-CDS-H-canaliculatus_F_contig10257:3961..40941622928655.4864445-CDS-H-canaliculatus_F_contig10257:3961..4094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 3962..4094 +
1696845515.6575136-CDS-H-canaliculatus_F_contig10257:3961..40941696845515.6575136-CDS-H-canaliculatus_F_contig10257:3961..4094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 3962..4094 +
1622928655.500221-CDS-H-canaliculatus_F_contig10257:4444..48671622928655.500221-CDS-H-canaliculatus_F_contig10257:4444..4867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 4445..4867 +
1696845515.6655717-CDS-H-canaliculatus_F_contig10257:4444..48671696845515.6655717-CDS-H-canaliculatus_F_contig10257:4444..4867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10257 4445..4867 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928655.510948-UTR-H-canaliculatus_F_contig10257:4867..49411622928655.510948-UTR-H-canaliculatus_F_contig10257:4867..4941Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10257 4868..4941 +
1696845515.6738584-UTR-H-canaliculatus_F_contig10257:4867..49411696845515.6738584-UTR-H-canaliculatus_F_contig10257:4867..4941Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10257 4868..4941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10257.267.1prot_H-canaliculatus_F_contig10257.267.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10257 536..4867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10257.267.1

>prot_H-canaliculatus_F_contig10257.267.1 ID=prot_H-canaliculatus_F_contig10257.267.1|Name=mRNA_H-canaliculatus_F_contig10257.267.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=320bp
MKMTSRAFMLSAALATSTRHGGRGGVSAFVRSAPAAVLGRLRTSTSQKST
FAGKALPAVAPRTSPVAFCESGGGGSRSGNAMGMLFSNPFKKKEIDYEEL
EGAAEEAAKSALKGEVPSKSEGGQDIATFAGGCFWGLELAFQRVPGVVGT
SVGYTQGEVEKPTYGEVCSGATGHTEAVQVFYNPSEVTFEELCNVFFGRI
NPTQVNGQGGDRGTQYRTGVYPHTKEQKDVVRSVSPSLARSRSRPLCAAR
GRGFLFLRSAFRSVFILLRPCCRCSAPRPCAGASSSPFSCCLLVFYGDFV
LDPHVSLFSRSVFSSGKGS*
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mRNA from alignment at H-canaliculatus_F_contig10257:536..4941+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10257.267.1 ID=mRNA_H-canaliculatus_F_contig10257.267.1|Name=mRNA_H-canaliculatus_F_contig10257.267.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4406bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10257:536..4941+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGATGACAAGCAGAGCTTTCATGCTTTCGGCAGGTGAGCAAGCCGG
TGTCGCTTCTTCGCAGCAAAAGGCATGACAGGTGAGAGAGAGTTTTTGAA
GTCACGCTTCGGGCTTGGACTTCAAATCATCATGCGTGGCGCGCCGCCTG
TTGGCATACAGGCTCATCGGTGAGCTACACGCCCGACCTAATGAGACAGG
TCATGTTCTCGAGCGAGTTGCGAACAACAGTGCCGCCGACGGTCGACAGA
GCATCTCTCGCTCTCCAGCAATTTGCATGACGGCGAAGAGAAGGAGCTGC
GTCTCGTCTTCTAGAGTCGTCTGCATCATCTTGTGTGTGTTGGGTTTGAA
CTCTCGTCGTGATCAGCCAGGTTCTTCCTCGGAGACCGACCAGCGCATCG
CTGCTCCCACGCCGGTCCAGTGCCGCAACCCCGACCTCGCCTCCCCCTAC
CAACCTTCCAACTCTCGATTTCTCCCTCTCCCCCTCGGCCATTCCGCCCG
ATCTCTCTCTCTCTCTCTCTCAGCGCTGGCTACGAGCACTCGCCACGGCG
GGAGGGGAGGAGTCAGCGCTTTCGTCCGAAGCGCCCCCGCGGCCGTGCTC
GGTCGCCTGCGGACGTCGACGTCCCAGAAGAGCACTTTCGCCGGAAAGGC
CCTGCCCGCGGTGGCTCCGAGGACGTCACCCGTTGCATTCTGTGAGAGGT
CCCGCGTTCCGTGTTAACTGCTGTCCAATACATTGCTTTGACCTTTCAGC
TTCTTGTGCCTTTTTGCGGTGTGGTCCGGAACGACCTGCTGTGTCATCTG
GTGTTAATTTCAAGAGACTTCATTGAACTCGTGAGTTTTGCGAGCTGGTT
TCTGGCTGCACCTGCCGGGTTGATGTCCCCCCCACGAGACCCACCAGCTG
CTTTGCAGCTGTCTTCAAGTATTGATTGGACTTCTGCATTCGTTTTTGTT
TCGTTGTTTCGACTCCTTTTCCTGAAGTATCACAAGATTAGCTATGAGAG
TAGCGACACAGAGTCGAAGATCCAATGAGGCATTTGTAGTTGGGGGAGAT
CATAACATCATAACGGAATTCCAGCTGGGACGAAGACATCGAGACACATC
GACAGAGGCCGAAGATGAAGAGTGTCAAAATCCTCCCGCGCAGGGTCATC
ACCAAAATTCCTCTCTGACTTGGGTCAATCAATGGTTGCGGGCAATTGGA
AGTCGCGCCGTACGTGGAGGTTGTATGCCGGGTTTTTCTCCGCCGTGTCT
GCCGGCCCGTGTCCCACCTTCCTCGTCATGATCACCCTCCTTCTCCCCCT
TCTCCCAACATGCAAAACATTTGTCGTGATGCCTTGGTCCGAACGGGTTG
CGGCAGTGATTCTCTTCGACCTCGAGCGGCTTGATTTTGTAGCGGAGACG
GGGAACAGATGCTCTGCGAGTATGAGCGACAGTAGCGGCAACAGCAGCAG
CAGTCCCATCGCGAGAAGCATGAACAAAGGGATGATCGCGAGTTGCACAT
GAAGCGGCCATTCTTAGGAGCAGCAAGATCCGGAAGGTCTCACTTCTCGC
AGCTCTCGTTTGTTGGTTACCGAGCCCGCCACCCGAGTTCGCAAAAAAAA
AAAAGTGACCAACGCGCTTCTGCGGAGTCACTAAATGCTCCAGGAGATTG
CACAGAGAAGCTACGAGGACAGCAACAAAAACAATCGCTGATATGGGATT
TTGGAGTGACGAGGGCGACTTTCGTACAGCTAGTTTCGAAATCTGCCCCC
CCCCCCCTCTGAAAAAGTCTGACACATGCACCGGCCGTTAACAGGATGCT
CATGTCGATAGATGAATGCTGGAAGGGATGAGGACAGAGGGAATACTTTT
CCAAACGAATGCGATCAGCCCTCGCCTGGACAGCACGCCAACCCGCGGAT
CAACACGTATCTCTCGCAGGACTTGCGCTTGTACGATACGAGCAAACGAT
GAGGGACACCTCTGCCCCCCCCCCTCTTACCCTCACCTTGCTGCACCTCG
CAGCACCTAGCGGGTGGGCTTTACGATTCATTCTTCCTTTTCGCACTCTT
CCTCACGTCCCCACGTGTTCGTTGTTGCCCAACGGAGTCCCTGTCTCCGC
CATCCCCTCTCCCACCCAACACAAAGGCCCTACTCGGAAGTTCCTGTACC
ATGCCGGCATCCTCATCTACTCCCCTCCCTTCGCATCCTGATACGTGCGA
ATTCTCGAACTCTTCGCTAAGCCCTCCCCCACCCCCACTGACATGCTTCC
TCCCTCTCCCTCTTTGGTTCCTTCCATCGAACGTTGTCGCCACGCCGTTC
CCTTCCGCGGACCCCCCCGCCCCCCCTCACCCCCAAACAGCATACAACGA
CCGAAGCGGCGGCGGCGGCAGTAGGAGCGGTAACGCGATGGGCATGCTGT
TCTCTAACCCCTTCAAGAAGAAGGAGATCGACTACGAGGAGCTGGAGGGC
GCGGCCGAAGAGGCGGCGAAGTCTGCTCTCAAGGGCGAGGTGAGCTACAC
GCGCCCAAGCAGAGGAGGAGGAGGAGGAGGAGGAGGGGAGTAGCACTCGT
CTATTTTTTTGTCTTTGTTTCATTCCTGTGAAGAATGTCCGCTCGATCCT
CCGAAGAGAGGCCGAGACGAGACGACACAGGCATGTGATGACGAGATGGT
CGAAATCCCATGTTTGACTACTCCTCAGGCATTCAACAGGAAGTCACGCA
CGATGTACGATTCACGACTCACGAGTCGGCCTTCCACGCGCTACCGGAAT
CGTTTTCATCTCTCTCTCGGCTTCGGCGCGTGAGTCGATGACACCTCTAT
AGCGGGCACGGCACATCTCCAGCGCGTCGTATATTTCTCGTCGCGACGGC
TCTCCCCCCTCCCCCCCATCCTCGCGGTGCTCCTTGTCGATAGGTGCCGT
CGAAGAGCGAAGGCGGGCAAGATATCGCGACGTTCGCCGGCGGATGCTTC
TGGTAAGATTTACATGTGCGCTCCGCGGTGTCTGTCTGAACGCAACGCGT
TTTGTGCGAGGTGACGAGTTGTTGGAGGTTGGCGTGTTTCGAGGGTAGAG
AGGTTGGACGTATGTGCTCGTGATTCTGCTACAAGTACATGCTGTCATTT
GTTGAGGCCGCCGTCGATGTGAATATTGGTCGGGGAAGCTCTAGCAGGGA
GAACGGCTTGCCATGGAAACGGTCGTCTTTGTCTCGTCGAGAGTGGCCGA
TCCGACCCTGAATCTGGACCTGGATGGTCACGATTTTTAGCCGCCTGCGT
CTTCACCTTTCTGTGTGAAGACCTGTCCACGTGGCACAGAAAGTGAAACT
TGTTTTGCAGCACTCGTTCAAGAAGAAATGACGGTGGGAGGCGTCAGACC
CCCGTACAGCAGTAGACGATGCGTAACGACGACTGTCGCCCGCCCGTTCC
CTCTTGTCCGCGCACGGTACGAACAGGGGGCTGGAGCTGGCCTTCCAGCG
CGTGCCGGGAGTGGTTGGCACCTCGGTGGGGTACACGCAGGGCGAGGTCG
AGAAGCCCACGTACGGCGAGGTGTGCAGCGGCGCTACCGGACACACCGAG
GCGGTGCAGGTGCGCGGTCTGGCGGAAGGGGGGGGGTGGGGCTGCGACAG
GTGTAGACATTGGCATAGGTGGTAGGAGCGGTGGCTCCGATGCAGTGTCA
TGGTCGGTCTTGGTGATGGGGGAGGTGGCTGCAGGAGTGGTGGCGGCGGA
TGTGCACGTGCGTTTCTGGCGCTGACTGTGATGTTCCCCGAGCGTGTCGG
CGTCAGCACGGAGCGTATCCTGAGACAGCTGAAGTTACGTCCGTCCGTGA
TTTTGACGCCAAAACGACAACAACAACGACGACGACGACAACGACAACTG
TTCCTGCCGGCAACACCCGACTGAATGCGCGCTTTCAACCCGCCGTTTCG
GCGGAACAGGTCTTCTACAACCCGTCTGAGGTGACGTTCGAGGAGTTGTG
CAACGTCTTCTTCGGCCGCATAAACCCCACCCAGGTCAACGGCCAAGGCG
GAGACCGGGGCACGCAATACCGAACGGGTGTTTACCCCCACACGAAGGAG
CAGAAGGACGTGGTACGTTCCGTCTCTCCCTCTCTCGCTCGCTCTCGCTC
TCGCCCTCTTTGTGCTGCCCGAGGACGCGGCTTTCTTTTTCTTCGGAGCG
CTTTTCGCTCGGTTTTCATCCTTTTGAGGCCTTGTTGCCGGTGCTCTGCC
CCCCGCCCGTGTGCCGGCGCTTCGTCTAGTCCTTTCTCCTGCTGCCTTCT
TGTCTTCTATGGGGATTTTGTCTTGGACCCACACGTATCGTTGTTTTCAC
GATCCGTGTTCTCGTCAGGGAAGGGGAGTTAGTGTTTGTCCTCGAGCAGC
AGCCGAGCAGAAAGCGGCCTGGTTTTTGTGCGATGGTACATGTTGCTGGT
TGCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10257:536..4941+

>mRNA_H-canaliculatus_F_contig10257.267.1 ID=mRNA_H-canaliculatus_F_contig10257.267.1|Name=mRNA_H-canaliculatus_F_contig10257.267.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1920bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10257:536..4941+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGATGACAAGCAGAGCTTTCATGCTTTCGGCAGATGAAGATGACAA
GCAGAGCTTTCATGCTTTCGGCAGCGCTGGCTACGAGCACTCGCCACGGC
GGGAGGGGAGGAGTCAGCGCTTTCGTCCGAAGCGCCCCCGCGGCCGTGCT
CGGTCGCCTGCGGACGTCGACGTCCCAGAAGAGCACTTTCGCCGGAAAGG
CCCTGCCCGCGGTGGCTCCGAGGACGTCACCCGTTGCATTCTGTGAGAGC
GCTGGCTACGAGCACTCGCCACGGCGGGAGGGGAGGAGTCAGCGCTTTCG
TCCGAAGCGCCCCCGCGGCCGTGCTCGGTCGCCTGCGGACGTCGACGTCC
CAGAAGAGCACTTTCGCCGGAAAGGCCCTGCCCGCGGTGGCTCCGAGGAC
GTCACCCGTTGCATTCTGTGAGAGCGGCGGCGGCGGCAGTAGGAGCGGTA
ACGCGATGGGCATGCTGTTCTCTAACCCCTTCAAGAAGAAGGAGATCGAC
TACGAGGAGCTGGAGGGCGCGGCCGAAGAGGCGGCGAAGTCTGCTCTCAA
GGGCGAGCGGCGGCGGCGGCAGTAGGAGCGGTAACGCGATGGGCATGCTG
TTCTCTAACCCCTTCAAGAAGAAGGAGATCGACTACGAGGAGCTGGAGGG
CGCGGCCGAAGAGGCGGCGAAGTCTGCTCTCAAGGGCGAGGTGCCGTCGA
AGAGCGAAGGCGGGCAAGATATCGCGACGTTCGCCGGCGGATGCTTCTGG
TGCCGTCGAAGAGCGAAGGCGGGCAAGATATCGCGACGTTCGCCGGCGGA
TGCTTCTGGGGGCTGGAGCTGGCCTTCCAGCGCGTGCCGGGAGTGGTTGG
CACCTCGGTGGGGTACACGCAGGGCGAGGTCGAGAAGCCCACGTACGGCG
AGGTGTGCAGCGGCGCTACCGGACACACCGAGGCGGTGCAGGGGGCTGGA
GCTGGCCTTCCAGCGCGTGCCGGGAGTGGTTGGCACCTCGGTGGGGTACA
CGCAGGGCGAGGTCGAGAAGCCCACGTACGGCGAGGTGTGCAGCGGCGCT
ACCGGACACACCGAGGCGGTGCAGGTCTTCTACAACCCGTCTGAGGTGAC
GTTCGAGGAGTTGTGCAACGTCTTCTTCGGCCGCATAAACCCCACCCAGG
TCAACGGCCAAGGCGGAGACCGGGGCACGCAATACCGAACGGGTGTTTAC
CCCCACACGAAGGAGCAGAAGGACGTGGTACGTTCCGTCTCTCCCTCTCT
CGCTCGCTCTCGCTCTCGCCCTCTTTGTGCTGCCCGAGGACGCGGCTTTC
TTTTTCTTCGGAGCGCTTTTCGCTCGGTTTTCATCCTTTTGAGGCCTTGT
TGCCGGTGCTCTGCCCCCCGCCCGTGTGCCGGCGCTTCGTCTAGTCCTTT
CTCCTGCTGCCTTCTTGTCTTCTATGGGGATTTTGTCTTGGACCCACACG
TATCGTTGTTTTCACGATCCGTGTTCTCGTCAGGGAAGGGGAGTTAGGTC
TTCTACAACCCGTCTGAGGTGACGTTCGAGGAGTTGTGCAACGTCTTCTT
CGGCCGCATAAACCCCACCCAGGTCAACGGCCAAGGCGGAGACCGGGGCA
CGCAATACCGAACGGGTGTTTACCCCCACACGAAGGAGCAGAAGGACGTG
GTACGTTCCGTCTCTCCCTCTCTCGCTCGCTCTCGCTCTCGCCCTCTTTG
TGCTGCCCGAGGACGCGGCTTTCTTTTTCTTCGGAGCGCTTTTCGCTCGG
TTTTCATCCTTTTGAGGCCTTGTTGCCGGTGCTCTGCCCCCCGCCCGTGT
GCCGGCGCTTCGTCTAGTCCTTTCTCCTGCTGCCTTCTTGTCTTCTATGG
GGATTTTGTCTTGGACCCACACGTATCGTTGTTTTCACGATCCGTGTTCT
CGTCAGGGAAGGGGAGTTAG
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