mRNA_H-canaliculatus_F_contig10256.266.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10256.266.1
Unique NamemRNA_H-canaliculatus_F_contig10256.266.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10256.266.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 1.030e-69
Identity = 120/183 (65.57%), Postives = 140/183 (76.50%), Query Frame = 1 
Query:  157 MRHGVNISAPFVGMKREEGTEYPFAKQYCIRRSDHGTRVMVVQEMAEGSKGAESLTEGKLIHVLEGEDYLNGT-VGARAGLVTKLKARIEGNVYKLGDFIVRTGKVRKGAVYRGLALEVEYLPSCRVADGLAMINGLMLSVDEDVLFRPSSDLVGDSTTFGTSQQFSAKHTALQTTDLFNKVF 702
            M+HGVN++APFVGMK+EEG EYPFAKQ+CIRR+D GTRVMVVQEMAE    A ++ EGKL HVLEGED L      ARAGLVT++KA IEG+ Y+LGDF+VR GK +KGAV+RGLALEVEY P  RVADGL+MI   + S+D+D  F   SDL  D   FG   QFS KH ALQ TDLFN+VF
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSYA-AVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQ-DLAMFGRGPQFSVKHNALQITDLFNEVF 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10256.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI1.030e-6965.57Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10256contigH-canaliculatus_F_contig10256:1414..5023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1279
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10256.266.1prot_H-canaliculatus_F_contig10256.266.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10256 1824..4452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928654.5144143-UTR-H-canaliculatus_F_contig10256:1413..15211622928654.5144143-UTR-H-canaliculatus_F_contig10256:1413..1521Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10256 1414..1521 +
1696845515.525028-UTR-H-canaliculatus_F_contig10256:1413..15211696845515.525028-UTR-H-canaliculatus_F_contig10256:1413..1521Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10256 1414..1521 +
1622928655.330895-UTR-H-canaliculatus_F_contig10256:1775..18231622928655.330895-UTR-H-canaliculatus_F_contig10256:1775..1823Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10256 1776..1823 +
1696845515.5349057-UTR-H-canaliculatus_F_contig10256:1775..18231696845515.5349057-UTR-H-canaliculatus_F_contig10256:1775..1823Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10256 1776..1823 +
1622928655.4061377-UTR-H-canaliculatus_F_contig10256:4452..50231622928655.4061377-UTR-H-canaliculatus_F_contig10256:4452..5023Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10256 4453..5023 +
1696845515.605965-UTR-H-canaliculatus_F_contig10256:4452..50231696845515.605965-UTR-H-canaliculatus_F_contig10256:4452..5023Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10256 4453..5023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928655.3407476-CDS-H-canaliculatus_F_contig10256:1823..19041622928655.3407476-CDS-H-canaliculatus_F_contig10256:1823..1904Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 1824..1904 +
1696845515.5462763-CDS-H-canaliculatus_F_contig10256:1823..19041696845515.5462763-CDS-H-canaliculatus_F_contig10256:1823..1904Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 1824..1904 +
1622928655.3531437-CDS-H-canaliculatus_F_contig10256:2156..22261622928655.3531437-CDS-H-canaliculatus_F_contig10256:2156..2226Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 2157..2226 +
1696845515.5594828-CDS-H-canaliculatus_F_contig10256:2156..22261696845515.5594828-CDS-H-canaliculatus_F_contig10256:2156..2226Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 2157..2226 +
1622928655.374175-CDS-H-canaliculatus_F_contig10256:2337..24531622928655.374175-CDS-H-canaliculatus_F_contig10256:2337..2453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 2338..2453 +
1696845515.5747316-CDS-H-canaliculatus_F_contig10256:2337..24531696845515.5747316-CDS-H-canaliculatus_F_contig10256:2337..2453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 2338..2453 +
1622928655.386443-CDS-H-canaliculatus_F_contig10256:2895..29791622928655.386443-CDS-H-canaliculatus_F_contig10256:2895..2979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 2896..2979 +
1696845515.5862272-CDS-H-canaliculatus_F_contig10256:2895..29791696845515.5862272-CDS-H-canaliculatus_F_contig10256:2895..2979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 2896..2979 +
1622928655.3962896-CDS-H-canaliculatus_F_contig10256:4251..44521622928655.3962896-CDS-H-canaliculatus_F_contig10256:4251..4452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 4252..4452 +
1696845515.5968254-CDS-H-canaliculatus_F_contig10256:4251..44521696845515.5968254-CDS-H-canaliculatus_F_contig10256:4251..4452Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10256 4252..4452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10256.266.1

>prot_H-canaliculatus_F_contig10256.266.1 ID=prot_H-canaliculatus_F_contig10256.266.1|Name=mRNA_H-canaliculatus_F_contig10256.266.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
MRHGVNISAPFVGMKREEGTEYPFAKQYCIRRSDHGTRVMVVQEMAEGSK
GAESLTEGKLIHVLEGEDYLNGTVGARAGLVTKLKARIEGNVYKLGDFIV
RTGKVRKGAVYRGLALEVEYLPSCRVADGLAMINGLMLSVDEDVLFRPSS
DLVGDSTTFGTSQQFSAKHTALQTTDLFNKVFQ*
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mRNA from alignment at H-canaliculatus_F_contig10256:1414..5023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10256.266.1 ID=mRNA_H-canaliculatus_F_contig10256.266.1|Name=mRNA_H-canaliculatus_F_contig10256.266.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3610bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10256:1414..5023+ (Hapterophycus canaliculatus Oshoro5f female)
CTCTTTGGCTATCCTGTGGAGCAGGAGGGCATTCTCCAGGCCGAGAGACA
ACTTGAAGACCGAGTGCACGGCCTTGGAGCTCAACAGTTAGAAACTTGGA
CCGTTGAGGTAAGATTATACGTGGGTACGTCGGAGGTGTTCTCTTGGTGT
GACCCCCGCTGGTACATCGACAGTCAGTTGCAGAGAGATTATACACCGCG
CCCTTTATGTGCACCCACTTTGAAACGTGTGAGTGCACCGGAAAAGGAGA
AGGCTAATTAGGGCAGAATAGATGGGATGAAAAGAAAATGCTGTTTCAAT
TTCAAATATATTTTACGACTTACTCGACCAAATCTAATACGGAGGTGACT
CTTTCCGAATAGGTCACCTATAAGCTGAAGCAGAAGAAGAAGAGAGTGAA
CATCACGGAGATGAGGCATGGTGTGAACATCTCTGCCCCTTTCGTGGGAA
TGAAAAGGGAGGAGGGCACCGAGTATCCGTTCGCCAAGCAGGTAAGGCTG
CATAAAGGTATGCACCGACCCAGTCCTCTGCTTCAGGTGCGTCAGGACAC
CCCAAACAGCAGCCAGTGCCTGATGTGTCCCAAGACGTGCAGCCAGCATG
ATAAAAGAAGAAAGGACATCAACAACCCAGCGGTTAGTTCGTTCCCTCTT
TATGTAGGGCGAATTCGGAAGTATTGAACATCGAAAAGGGTCATGCTCGA
CTGAACGATGATGCTTGCATGCCGCTCTTTCAATGCTCGACAGTATTGCA
TTCGCAGGAGTGATCACGGGACTCGCGTGATGGTTGTTCAGGAGATGGCT
GAAGGATCAAAAGGTGCGCGACTTTCGTCTTGACCTTTTAGTTTGAAGCA
AGGCGCTGGTCGGGGAAGCCGTTTTTGAGCTGTTCTGGTGCACCGCAGCA
CTCAAGTCAGAATCCTTGTCACAGGTGCGGAGTCTCTGACGGAAGGAAAG
CTGATCCATGTCTTGGAGGGGGAAGATTACCTTAATGGAACTGTGGGAGC
AAGAGCTGGATTGGTTACGAAGTTGAAGGCCCGTATCGAGGTAAAAACTC
GAAATATAGGCACTCAATTCGCAATGCAATATCGACCTCCACAACGTTAC
GACCACGCGGGCTTATTCATTGCCGACCCCCTCTTCCTTTGCAAGTGGCA
TTGCGATGTTTATGCGTTTGTCGGAATCTTGGCTGCGCAGGGCGTACACC
GTGATCGAGTTTGGATATCGAGGGGGTTGACGAATACATGTAGAAGCAGT
TTGCATGGCATGCGGTTTAAAGGGCACACCATTCGGAGTGTCCACAAATT
CGTCTCACTTTGCGTATCCGACCGGCGGAATCAGACGCCGCGATACTCCG
CCGCGTCGCTGGGCCGGCGTAGGAAAGACGGAATGCTCAAGTGAATAATT
TAAGGGATTCCTCCACGAGGCGCTATTTCATGGTGTTATGTCTCGACGCT
TTACCCCTTCAACGATTCCCTTGTCTGTTCAGGGAAACGTTTACAAATTG
GGCGATTTCATAGTGCGCACAGGAAAGGTGCGCAAAGGTGCCGTCTACAG
GGGCTTGGCGTTGGAAGTGAGTACGTCACACTTTTCCGGCGTGGATGTTT
TTCGATTCAAAATATGTCGGTAAATCTAGGTACACTTGTCGAAATTTATG
CTTTTGCTTCGGGCCGTTTCAAGCGGACAGCCCATACGTCGTAATTCGAT
ATTTGTTGACCATGAGACTGGACGCAGCTGCTACAAATGTATCAAGTGGG
TGGCGTTTCGGAGCGCCGACAGAGATCGCGCCGTGCAGTAGGTCACTTCC
ATCAAAGTTTGGTATTTGGCCGATGCAGGGCACAGCAGTGCCGGGAGCCA
GCAAGCGCACAAAGACAGAGAAAAGAGCAGTGATAATGTGAAAAGACTAG
CCCTTTTTGATTACCATGGCGGCGTGGCTTGTAAGAGATGAGCGATCTTC
CGAGTTTTCAGTCAGAAAGATCTTCGGCGGCCGAATCGACCCTCAGGAAG
CTTTGCACTGTTTGCACCGATTTTTGAGTGCATCGTGCCTACTCAAACCA
CCGCCAAGGGGTGGCGGGGCTTAGAGAGGATAACACACGGGTGCTTTTCG
GCCACCAACGAGCAGCTTTGGGGGCTTGTGTCTCTTGGTCTGCTTATCAG
TCTTCCTTTTCTTGTATTATTTGAATGCGTCACCATGTGAGATTCTCAAC
AGCGGGGTACTCAAACGATCTGTACCGCAATTGAATCGATTTTCATTCGA
CCATCCCAGCTAGAGCACCCATTGTGAGCGGCGACGCCCTCTGCGGGTAA
CACAAGGGAAGGTTCCTCTATCAGACAGAGTCTTGAAGGGCTTGCAGCTA
GTGTGATACCATTTTTGCCGACCTGATGTGCTCGTGAAACATCCAGAAAA
AATCTCCCACGACTTCGGTGCCCCCTACGTCAACCAAAACACCAAAACGC
GGTTGTATGCGGCGACCCGGAGGTATTACTTGTTTTCGTTCTTTTTTTGA
GCGGCACGGACCTCGCAAGCAAGCTGGCAACCAAAGCAGCCGGTTTCGTG
CTGAGATCCGGCGCGGTATGTGACTACGTGACATATTCGAATATCATTGA
AACTTCGAGAGGTAATCCTTCAGATTTTTTCCGTAGGATTCAAAATCGAA
ATGGAGGTCTCTTTTCGGAATTTGGGGTGCTGCTCATTTCGATTTCCTTC
GAAATTCAGAAGACATGACGAGAAAGGTCGATTTCTGGCTCTCGTTTGAA
ACGGCCCTTAGGGAACTTGCTCAAGATGCAATGCCAACCTGAGACCAATT
GCTCAGCTTGTGCATCTGCGTTTCCACGTCGCGTACAGGTGGAATATCTT
CCTTCCTGCAGAGTGGCGGACGGACTGGCCATGATCAACGGGCTCATGCT
GTCCGTCGATGAGGATGTCCTGTTCCGTCCATCCTCCGACCTTGTCGGAG
ATTCCACGACCTTTGGAACAAGTCAGCAGTTTTCTGCGAAGCACACCGCG
CTGCAAACAACCGATTTGTTTAACAAAGTGTTTCAATGATTCATTAACCT
ACCGTTTCAGGCATGCCACCAGCGCGAAGGGACCATCACAGCGAGAAAGA
AGGACACATCCTTGGTTTTGGTGGTTCCGTTTCCTTCAAAACGGCAGGTG
GTTTAACCCTCCGACTTCCTGTGTGTTTGATGATCACTTCTGGAGATCAC
TCTCCGTTACACGAGAAAGCAGTACCATACTGCTGTAGCGCCGTGTATCG
ATCGTTGCGACACATACATATCCATGGAAGCAATACCGCAGCACTCGGAG
ACCAGCTACGCATACTACTACTGTACTACGCAGACCTCGCACGAGAGACC
GCAGCACCTATCGATCGTGCCTGGTGGTGTAAGGGCCCGTGTTAACGAGG
TTCAAAAAATCATTAATGATTTACAAAAAATCCATCTCGATCTCCCATTG
GCCAACGAAATTTTTATCCGACGGCGTTGATTGATTTTATCACGAAATCC
CAAACAACCCTCTGGGACCTTTTTTCTATGATTATCATTATATCATTATT
GGGCGTTCAGATATGCAGAAGGCTTTCTACGTGGGGGGCGAAGTCTATGC
AAGTCATCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10256:1414..5023+

>mRNA_H-canaliculatus_F_contig10256.266.1 ID=mRNA_H-canaliculatus_F_contig10256.266.1|Name=mRNA_H-canaliculatus_F_contig10256.266.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10256:1414..5023+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGCATGGTGTGAACATCTCTGCCCCTTTCGTGGGAATGAAAAGGGA
GGAGGGCACCGAGTATCCGTTCGCCAAGCAGATGAGGCATGGTGTGAACA
TCTCTGCCCCTTTCGTGGGAATGAAAAGGGAGGAGGGCACCGAGTATCCG
TTCGCCAAGCAGTATTGCATTCGCAGGAGTGATCACGGGACTCGCGTGAT
GGTTGTTCAGGAGATGGCTGAAGGATCAAAAGTATTGCATTCGCAGGAGT
GATCACGGGACTCGCGTGATGGTTGTTCAGGAGATGGCTGAAGGATCAAA
AGGTGCGGAGTCTCTGACGGAAGGAAAGCTGATCCATGTCTTGGAGGGGG
AAGATTACCTTAATGGAACTGTGGGAGCAAGAGCTGGATTGGTTACGAAG
TTGAAGGCCCGTATCGAGGTGCGGAGTCTCTGACGGAAGGAAAGCTGATC
CATGTCTTGGAGGGGGAAGATTACCTTAATGGAACTGTGGGAGCAAGAGC
TGGATTGGTTACGAAGTTGAAGGCCCGTATCGAGGGAAACGTTTACAAAT
TGGGCGATTTCATAGTGCGCACAGGAAAGGTGCGCAAAGGTGCCGTCTAC
AGGGGCTTGGCGTTGGAAGGAAACGTTTACAAATTGGGCGATTTCATAGT
GCGCACAGGAAAGGTGCGCAAAGGTGCCGTCTACAGGGGCTTGGCGTTGG
AAGTGGAATATCTTCCTTCCTGCAGAGTGGCGGACGGACTGGCCATGATC
AACGGGCTCATGCTGTCCGTCGATGAGGATGTCCTGTTCCGTCCATCCTC
CGACCTTGTCGGAGATTCCACGACCTTTGGAACAAGTCAGCAGTTTTCTG
CGAAGCACACCGCGCTGCAAACAACCGATTTGTTTAACAAAGTGTTTCAA
TGAGTGGAATATCTTCCTTCCTGCAGAGTGGCGGACGGACTGGCCATGAT
CAACGGGCTCATGCTGTCCGTCGATGAGGATGTCCTGTTCCGTCCATCCT
CCGACCTTGTCGGAGATTCCACGACCTTTGGAACAAGTCAGCAGTTTTCT
GCGAAGCACACCGCGCTGCAAACAACCGATTTGTTTAACAAAGTGTTTCA
ATGA
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