mRNA_H-canaliculatus_F_contig10253.265.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10253.265.1
Unique NamemRNA_H-canaliculatus_F_contig10253.265.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10253.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10253contigH-canaliculatus_F_contig10253:4..665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size664
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928654.4303493-CDS-H-canaliculatus_F_contig10253:3..3811622928654.4303493-CDS-H-canaliculatus_F_contig10253:3..381Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10253 4..381 +
1696845515.5060642-CDS-H-canaliculatus_F_contig10253:3..3811696845515.5060642-CDS-H-canaliculatus_F_contig10253:3..381Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10253 4..381 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928654.4454892-UTR-H-canaliculatus_F_contig10253:381..6651622928654.4454892-UTR-H-canaliculatus_F_contig10253:381..665Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10253 382..665 +
1696845515.5161781-UTR-H-canaliculatus_F_contig10253:381..6651696845515.5161781-UTR-H-canaliculatus_F_contig10253:381..665Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10253 382..665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10253.265.1prot_H-canaliculatus_F_contig10253.265.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10253 4..381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10253.265.1

>prot_H-canaliculatus_F_contig10253.265.1 ID=prot_H-canaliculatus_F_contig10253.265.1|Name=mRNA_H-canaliculatus_F_contig10253.265.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
RPTNITILLVVQHANTALHHSRQTPRTSGRDLLLPPGSVAPRLRHRLQSH
ESPSEDLTIAAAGATEGKRESGSVIYLKIRLLSPRVLYVVVPLITVLDIV
VSRCSSTVGWMVLKRRPSNIRRRRR*
back to top

mRNA from alignment at H-canaliculatus_F_contig10253:4..665+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10253.265.1 ID=mRNA_H-canaliculatus_F_contig10253.265.1|Name=mRNA_H-canaliculatus_F_contig10253.265.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=662bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10253:4..665+ (Hapterophycus canaliculatus Oshoro5f female)
CGTCCCACAAACATCACCATCCTCCTCGTCGTCCAGCACGCTAACACCGC
TCTCCACCATAGCAGGCAAACCCCACGGACGAGTGGTAGGGACCTCCTGC
TGCCCCCAGGCAGTGTCGCCCCCCGGCTGAGACACCGGCTGCAAAGCCAT
GAATCCCCGAGCGAAGACCTGACAATCGCTGCCGCCGGCGCCACTGAAGG
GAAGCGAGAGAGCGGCAGCGTGATATATCTCAAAATCCGCTTGCTGTCGC
CGCGCGTGCTCTACGTCGTCGTTCCACTCATCACCGTCCTCGATATCGTC
GTGAGCAGATGCTCCTCCACCGTCGGCTGGATGGTCCTCAAACGCCGCCC
GTCGAACATCCGTCGGCGCCGGCGGTAGCGGCGGCTGCTCCTCATGTCCC
CAAGGGCGCTCCACAAACTCCTCTGCGCTGCCTTCTACGCCATGACCACC
GTGAGACGGTGGCGCAGCGGCGCCGTCGTCGTCGATCACGTCTGGCGTGT
CAAAGCCGTCGGCATCGATCACGCCACCAGTGAACGAGGCAGTAGCGGGA
GCAACCTCATAGCCATCCGCCGTAGTGGTAACCACGTTCGCCTGCGGGTA
CCCATCTAGGTTGCGACGATGACGATGACGCAGACGACAACGACGAGCGG
CATGGCCCCAAT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10253:4..665+

>mRNA_H-canaliculatus_F_contig10253.265.1 ID=mRNA_H-canaliculatus_F_contig10253.265.1|Name=mRNA_H-canaliculatus_F_contig10253.265.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10253:4..665+ (Hapterophycus canaliculatus Oshoro5f female)
CGTCCCACAAACATCACCATCCTCCTCGTCGTCCAGCACGCTAACACCGC
TCTCCACCATAGCAGGCAAACCCCACGGACGAGTGGTAGGGACCTCCTGC
TGCCCCCAGGCAGTGTCGCCCCCCGGCTGAGACACCGGCTGCAAAGCCAT
GAATCCCCGAGCGAAGACCTGACAATCGCTGCCGCCGGCGCCACTGAAGG
GAAGCGAGAGAGCGGCAGCGTGATATATCTCAAAATCCGCTTGCTGTCGC
CGCGCGTGCTCTACGTCGTCGTTCCACTCATCACCGTCCTCGATATCGTC
GTGAGCAGATGCTCCTCCACCGTCGGCTGGATGGTCCTCAAACGCCGCCC
GTCGAACATCCGTCGGCGCCGGCGGTAGCGTCCCACAAACATCACCATCC
TCCTCGTCGTCCAGCACGCTAACACCGCTCTCCACCATAGCAGGCAAACC
CCACGGACGAGTGGTAGGGACCTCCTGCTGCCCCCAGGCAGTGTCGCCCC
CCGGCTGAGACACCGGCTGCAAAGCCATGAATCCCCGAGCGAAGACCTGA
CAATCGCTGCCGCCGGCGCCACTGAAGGGAAGCGAGAGAGCGGCAGCGTG
ATATATCTCAAAATCCGCTTGCTGTCGCCGCGCGTGCTCTACGTCGTCGT
TCCACTCATCACCGTCCTCGATATCGTCGTGAGCAGATGCTCCTCCACCG
TCGGCTGGATGGTCCTCAAACGCCGCCCGTCGAACATCCGTCGGCGCCGG
CGGTAG
back to top