mRNA_H-canaliculatus_F_contig10252.264.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10252.264.1
Unique NamemRNA_H-canaliculatus_F_contig10252.264.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10252.264.1 vs. uniprot
Match: D7G334_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G334_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.900e-23
Identity = 50/56 (89.29%), Postives = 50/56 (89.29%), Query Frame = -1 
Query:  245 DTDTSEAIDMRSVVTSSCCAPLGPDPPGFRVVRVFSRSIEHEYHSIDAPPQHIDLG 412
            DTDTSEAIDMRSVVTSS  APLGPDPPGFRVVRVFSR IEHEY  IDAPPQ IDLG
Sbjct:  276 DTDTSEAIDMRSVVTSSSGAPLGPDPPGFRVVRVFSRRIEHEYFDIDAPPQGIDLG 331
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BLAST of mRNA_H-canaliculatus_F_contig10252.264.1 vs. uniprot
Match: A0A835ZFF7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.620e-10
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = -1 
Query:  230 EAIDMRSVVTSSCCAPLGPDPPGFRVVRVFSRSIEHEYHSIDAPPQHIDLGEEP*P 397
            E ++M+ + TSS   PLGPDP G R+VRVF   IEHEYH++   P+ + L  EP P
Sbjct:  953 ERVEMQHITTSSVTYPLGPDPVGLRLVRVFDDRIEHEYHALSEVPESVTLEAEPRP 1008
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BLAST of mRNA_H-canaliculatus_F_contig10252.264.1 vs. uniprot
Match: A0A6M1ZW31_9BACT (3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZW31_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 4.640e-6
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = -1 
Query:  239 MRSVVTSSCCAPLGPDPPGFRVVRVFSRSIEHEYHSIDAPPQHIDLGEE 385
            M  V TS+   P+G DP GFR+V+VF   +EHEY  ID  P+ + L  E
Sbjct:  263 MEVVTTSALGKPIGKDPSGFRIVKVFEDRVEHEYFGIDEVPESVSLQSE 311
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BLAST of mRNA_H-canaliculatus_F_contig10252.264.1 vs. uniprot
Match: A0A382CZ84_9ZZZZ (Metallophos domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382CZ84_9ZZZZ)

HSP 1 Score: 53.5 bits (127), Expect = 1.100e-5
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = -1 
Query:  239 EAIDMRSVVTSSCCAPLGPDPPGFRVVRVFSRSIEHEYHSIDAPPQHIDLGEE 397
            E  D++ + T     PLG DP GFR+VRV+  S+ H Y+S+D  P  +++ EE
Sbjct:  233 EYNDIKMITTGPVGKPLGDDPSGFRIVRVYPDSMRHLYYSLDEVPDEVNVDEE 285
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BLAST of mRNA_H-canaliculatus_F_contig10252.264.1 vs. uniprot
Match: X1IE94_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1IE94_9ZZZZ)

HSP 1 Score: 49.3 bits (116), Expect = 6.850e-5
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = -1 
Query:  248 DMRSVVTSSCCAPLGPDPPGFRVVRVFSRSIEHEYHSIDAPPQHIDL 388
            ++  V TSS   PLG DP GFR+V+V+   IEH+Y+S    P+ ++L
Sbjct:   59 ELELVTTSSSGKPLGEDPIGFRIVKVYPDRIEHKYYSYKEMPKKVNL 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10252.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G334_ECTSI1.900e-2389.29Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZFF7_9STRA7.620e-1050.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6M1ZW31_9BACT4.640e-646.943',5'-cyclic adenosine monophosphate phosphodieste... [more]
A0A382CZ84_9ZZZZ1.100e-541.51Metallophos domain-containing protein n=1 Tax=mari... [more]
X1IE94_9ZZZZ6.850e-544.68Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10252contigH-canaliculatus_F_contig10252:4502..4913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928654.3013-UTR-H-canaliculatus_F_contig10252:4501..45261622928654.3013-UTR-H-canaliculatus_F_contig10252:4501..4526Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10252 4502..4526 +
1696845515.4646256-UTR-H-canaliculatus_F_contig10252:4501..45261696845515.4646256-UTR-H-canaliculatus_F_contig10252:4501..4526Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10252 4502..4526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928654.3189707-CDS-H-canaliculatus_F_contig10252:4526..49131622928654.3189707-CDS-H-canaliculatus_F_contig10252:4526..4913Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10252 4527..4913 +
1696845515.479095-CDS-H-canaliculatus_F_contig10252:4526..49131696845515.479095-CDS-H-canaliculatus_F_contig10252:4526..4913Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10252 4527..4913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10252.264.1prot_H-canaliculatus_F_contig10252.264.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10252 4527..4913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10252.264.1

>prot_H-canaliculatus_F_contig10252.264.1 ID=prot_H-canaliculatus_F_contig10252.264.1|Name=mRNA_H-canaliculatus_F_contig10252.264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
MCGGGKHRSKHDKQIHQKQATGPTFYHARTLTKNKKKLFHNHRTTTEKCA
RDEHTTVVPSPKTRHPADRSGFLAKVDMLRRGVDGVVLVLYRSGKHAHDA
EPGGVGPQRRAAGAGDDAAHVDRLGGVRV
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mRNA from alignment at H-canaliculatus_F_contig10252:4502..4913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10252.264.1 ID=mRNA_H-canaliculatus_F_contig10252.264.1|Name=mRNA_H-canaliculatus_F_contig10252.264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=412bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10252:4502..4913+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCGCCCGCCCCTCGGATACTTGAATGTGCGGGGGGGGGAAGCATAGAT
CAAAACACGACAAGCAGATACACCAGAAACAAGCCACGGGACCAACATTT
TACCACGCACGCACGCTCACAAAAAACAAAAAAAAACTTTTTCACAATCA
CCGTACAACAACCGAAAAATGCGCGCGTGACGAGCACACTACAGTAGTAC
CATCGCCGAAGACCAGACATCCGGCGGACCGGTCAGGGTTCCTCGCCAAG
GTCGATATGCTGCGGCGGGGCGTCGATGGAGTGGTACTCGTGCTCTATCG
ATCGGGAAAACACGCGCACGACGCGGAACCCGGGGGGGTCGGGCCCCAGA
GGCGCGCAGCAGGAGCTGGTGACGACGCTGCGCATGTCGATCGCCTCGGA
GGTGTCCGTGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10252:4502..4913+

>mRNA_H-canaliculatus_F_contig10252.264.1 ID=mRNA_H-canaliculatus_F_contig10252.264.1|Name=mRNA_H-canaliculatus_F_contig10252.264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10252:4502..4913+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCGGGGGGGGGAAGCATAGATCAAAACACGACAAGCAGATACACCA
GAAACAAGCCACGGGACCAACATTTTACCACGCACGCACGCTCACAAAAA
ACAAAAAAAAACTTTTTCACAATCACCGTACAACAACCGAAAAATGCGCG
CGTGACGAGCACACTACAGTAGTACCATCGCCGAAGACCAGACATCCGGC
GGACCGGTCAGGGTTCCTCGCCAAGGTCGATATGCTGCGGCGGGGCGTCG
ATGGAGTGGTACTCGTGCTCTATCGATCGGGAAAACACGCGCACGACGCG
GAACCCGGGGGGGTCGGGCCCCAGAGGCGCGCAGCAGGAGCTGGTGACGA
CGCTGCGCATGTCGATCGCCTCGGAGGTGTCCGTGTCATGTGCGGGGGGG
GGAAGCATAGATCAAAACACGACAAGCAGATACACCAGAAACAAGCCACG
GGACCAACATTTTACCACGCACGCACGCTCACAAAAAACAAAAAAAAACT
TTTTCACAATCACCGTACAACAACCGAAAAATGCGCGCGTGACGAGCACA
CTACAGTAGTACCATCGCCGAAGACCAGACATCCGGCGGACCGGTCAGGG
TTCCTCGCCAAGGTCGATATGCTGCGGCGGGGCGTCGATGGAGTGGTACT
CGTGCTCTATCGATCGGGAAAACACGCGCACGACGCGGAACCCGGGGGGG
TCGGGCCCCAGAGGCGCGCAGCAGGAGCTGGTGACGACGCTGCGCATGTC
GATCGCCTCGGAGGTGTCCGTGTC
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