mRNA_H-canaliculatus_F_contig10249.260.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10249.260.1
Unique NamemRNA_H-canaliculatus_F_contig10249.260.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.520e-22
Identity = 52/81 (64.20%), Postives = 55/81 (67.90%), Query Frame = 3 
Query:    9 VATQYLEVFWVSIGNPKYKFVVWREAVRTLQSDNIMTMLDECKTALAFAHEDKAFDVVATICDGAAEQ------FTTTRSS 233
            VATQYLEVFWVSIGNPKYKF V+REAVR L    I  MLDE    L  AHEDK FDV+ T+CDGAAE       F TT  S
Sbjct:  438 VATQYLEVFWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAEHRSFQQHFATTTFS 518
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.670e-21
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 3 
Query:    3 KTVATQYLEVFWVSIGNPKYKFVVWREAVRTLQSDNIMTMLDECKTALAFAHEDKAFDVVATICDGAAEQ--FTTTRSSVG 239
            K VATQY+E+F+VSIG P+YKFVVWREAVR+L +D I  ML      LA AH DKAFDVVATICDGA E   F T  + +G
Sbjct:  679 KIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEHRSFQTHAAILG 759
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 5.930e-21
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 3 
Query:    3 KTVATQYLEVFWVSIGNPKYKFVVWREAVRTLQSDNIMTMLDECKTALAFAHEDKAFDVVATICDGAAEQ 212
            K +ATQY+E F+VS+GNP+YKFVVWREAVR+L +D I  ML      L+ AH DK FDVVAT+CDGA+EQ
Sbjct:  206 KILATQYVE-FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASEQ 274
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.070e-20
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 3 
Query:    3 KTVATQYLEVFWVSIGNPKYKFVVWREAVRTLQSDNIMTMLDECKTALAFAHEDKAFDVVATICDGAAEQF 215
            K VATQY+E+++VS+G P+YKFVVWREAVR+L +D I  ML     +LA AH DKAFDV+AT+CDGA  Q 
Sbjct:  446 KIVATQYVEMYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQL 516
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.480e-20
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 3 
Query:    3 KTVATQYLEVFWVSIGNPKYKFVVWREAVRTLQSDNIMTMLDECKTALAFAHEDKAFDVVATICDGAAEQ--FTTTRSSVG 239
            K VATQY+E+F+VSIG P+YKFVVWREAVR+L +D I  ML      LA AH DKAFDV+AT CDGA E   F T  + +G
Sbjct:  588 KIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEHRSFQTHAAILG 668
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 6.300e-20
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:    9 VATQYLEVFWVSIGNPKYKFVVWREAVRTLQSDNIMTMLDECKTALAFAHEDKAFDVVATICDGAAE 209
            VATQYLEVFWVSIGN KYKF V+REAV+ L    +  ML+E    L   HEDK FDV+ T+CDGAAE
Sbjct:  147 VATQYLEVFWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAE 213
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.130e-18
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:    9 VATQYLEVFWVSIGNPKYKFVVWREAVRTLQSDNIMTMLDECKTALAFAHEDKAFDVVATICDGAAE 209
            +ATQYLEV+WVSIGNPKYKF V+REAVR L    I  MLDE    L  AH DK  DV+ T+CDGA E
Sbjct:  223 MATQYLEVWWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGE 289
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Match: D8LK65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK65_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.070e-16
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:   27 EVFWVSIGNPKYKFVVWREAVRTLQSDNIMTMLDECKTALAFAHEDKAFDVVATICDGAAE 209
            +VFWVS+GNP YKF V+REAVR L    +  MLD+  T+L  AH DK FDV+ T+CDGAAE
Sbjct:   58 KVFWVSLGNPTYKFCVFREAVRGLTGPKLARMLDDIMTSLYQAHSDKNFDVIGTVCDGAAE 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10249.260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KFP1_9PHAE3.520e-2264.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE1.670e-2162.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R1_ECTSI5.930e-2164.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE1.070e-2061.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.480e-2060.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQL9_9PHAE6.300e-2064.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.130e-1864.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK65_ECTSI3.070e-1660.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10249contigH-canaliculatus_F_contig10249:399..1514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size299
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10249.260.1prot_H-canaliculatus_F_contig10249.260.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10249 853..1463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928653.5960028-UTR-H-canaliculatus_F_contig10249:398..4271622928653.5960028-UTR-H-canaliculatus_F_contig10249:398..427Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10249 399..427 +
1696845515.1835477-UTR-H-canaliculatus_F_contig10249:398..4271696845515.1835477-UTR-H-canaliculatus_F_contig10249:398..427Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10249 399..427 +
1622928653.6079116-UTR-H-canaliculatus_F_contig10249:768..8521622928653.6079116-UTR-H-canaliculatus_F_contig10249:768..852Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10249 769..852 +
1696845515.1946192-UTR-H-canaliculatus_F_contig10249:768..8521696845515.1946192-UTR-H-canaliculatus_F_contig10249:768..852Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10249 769..852 +
1622928653.6434546-UTR-H-canaliculatus_F_contig10249:1463..15141622928653.6434546-UTR-H-canaliculatus_F_contig10249:1463..1514Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10249 1464..1514 +
1696845515.2224607-UTR-H-canaliculatus_F_contig10249:1463..15141696845515.2224607-UTR-H-canaliculatus_F_contig10249:1463..1514Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10249 1464..1514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928653.6216795-CDS-H-canaliculatus_F_contig10249:852..9501622928653.6216795-CDS-H-canaliculatus_F_contig10249:852..950Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10249 853..950 +
1696845515.2053378-CDS-H-canaliculatus_F_contig10249:852..9501696845515.2053378-CDS-H-canaliculatus_F_contig10249:852..950Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10249 853..950 +
1622928653.6325772-CDS-H-canaliculatus_F_contig10249:1426..14631622928653.6325772-CDS-H-canaliculatus_F_contig10249:1426..1463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10249 1427..1463 +
1696845515.213691-CDS-H-canaliculatus_F_contig10249:1426..14631696845515.213691-CDS-H-canaliculatus_F_contig10249:1426..1463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10249 1427..1463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10249.260.1

>prot_H-canaliculatus_F_contig10249.260.1 ID=prot_H-canaliculatus_F_contig10249.260.1|Name=mRNA_H-canaliculatus_F_contig10249.260.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=45bp
MTMLDECKTALAFAHEDKAFDVVATICDGAAEQFTTTRSSVGTD*
back to top

mRNA from alignment at H-canaliculatus_F_contig10249:399..1514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10249.260.1 ID=mRNA_H-canaliculatus_F_contig10249.260.1|Name=mRNA_H-canaliculatus_F_contig10249.260.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10249:399..1514+ (Hapterophycus canaliculatus Oshoro5f female)
AGAAGACGGTCGCAACCCAGTACCTCGAGGTGCGTGTCTTGTGCGGCGAT
TGCTCTTTGACGAGATCGACACTTCCGTGTTTTTGGTTGTGCTGTTCGGT
CGATCTACCAGACGGGAGTTTTTTCGAGAGTGCGGAACACGAAAGGAGCA
AACGAAAAACAAATCGCGGGATTAGCCTAAAATCACGCCACGTCAACTTA
CGCACCAACGAGGTCAGTGCTCGACCCACCGCCGTAGCATCCTGGACTTG
TGCTAACGACCGGGCAGTGTTTGACTTTGCCGCTTCGCCCACGGAATCGG
CTCTGGATTCATTGCACTTCTGGCACTGCTCTAAATGTTCTGTTGTTCCC
TTCTCGTTCTAATCGCGCAGGTGTTTTGGGTCAGCATCGGCAACCCCAAG
TACAAGTTCGTGGTGTGGCGTGAAGCAGTGAGAACACTGCAATCGGATAA
CATCATGACTATGCTTGACGAGTGCAAGACCGCCCTTGCATTTGCACACG
AGGATAAAGCCTTCGACGTGGTCGCAACCATCTGTGACGGGGCAGCTGAA
CAGTGGGTGCAACCCTAACGAGCTATACATTCGCGCTCTGGGATTGCGCT
TTCGAATATGCGTGGCGATGACATGCCTGACCTCTCTCCCACGAACAATG
AAAACCCTTGTCACTTATTGTTCATGTTTGATCCGCGGCTCGTCTGTACC
CCTTGCTGTCCCTTTGTGCCGTTTACGTGTCCAACGCTTGTAGCCGGACA
GCGCAAAAGACAGCGCCACGTTCACCTTCGCAGATTGGGCGAAGGCAGAT
GATGACTTCGAACAAAGCTTCAGGGACTTTCCGGTCGCCTTCAAGCATCC
TCACCACGGGAAACCAGTCTTCAATTTGTCCGACCCATCTCACCTTTTAA
ATAAACTTGTGAATGCGCTCCATCATAGCGACCTCCCCTGGAAGGCGAGG
AATCTCACGAGACCGTGGACGGACCCAGCTACGGGAGAGTACGATTTAAT
CGAGTTTTCTCTTTCTACTCTGGAGAAGGTTTACTACAACGAGGAGCTCG
GTGGGGACGGATTAACACGGGGGGAGCAGGCTGCTTCGCTGCAGAGGTTC
TGGAGCATGAAGCTTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10249:399..1514+

>mRNA_H-canaliculatus_F_contig10249.260.1 ID=mRNA_H-canaliculatus_F_contig10249.260.1|Name=mRNA_H-canaliculatus_F_contig10249.260.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=270bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10249:399..1514+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTATGCTTGACGAGTGCAAGACCGCCCTTGCATTTGCACACGAGGA
TAAAGCCTTCGACGTGGTCGCAACCATCTGTGACGGGGCAGCTGAACAAT
GACTATGCTTGACGAGTGCAAGACCGCCCTTGCATTTGCACACGAGGATA
AAGCCTTCGACGTGGTCGCAACCATCTGTGACGGGGCAGCTGAACAGTTT
ACTACAACGAGGAGCTCGGTGGGGACGGATTAAGTTTACTACAACGAGGA
GCTCGGTGGGGACGGATTAA
back to top