mRNA_H-canaliculatus_F_contig10246.259.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10246.259.1
Unique NamemRNA_H-canaliculatus_F_contig10246.259.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 2.850e-61
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMG+DGSDD+EGGLNGMEAAFQ    + + FVWEEEALKRAKQSFLQSHETLVKSLEGRSTE+LMERMSGGD+RFMSIPQE I
Sbjct:  655 REQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGDDGSDDVEGGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDI 775
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 8.290e-60
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMG+DGSDD+E GLNGMEAAFQ    + + FVWEEEALKRAKQSFLQSHETLVKSLEGRSTE+LMERMSGGD+RFMSIPQE I
Sbjct:  908 REQVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGDDGSDDVEEGLNGMEAAFQVLHQILSGFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEMLMERMSGGDSRFMSIPQEDI 1028
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 136 bits (342), Expect = 9.460e-35
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFCIDHLVMVTV+A++EFL LD +FPTTKLH R    +G +     L+G EAA Q    +   +VWEE+AL RAKQ+F Q HE  +KSLEG STE LM +MS GD+RF+S+P EA+
Sbjct:  634 REQVELFCIDHLVMVTVDASEEFLTLDFSFPTTKLHAREGVAEGDE-----LSGFEAALQVVNQILTGYVWEEDALNRAKQAFYQLHEASIKSLEGSSTEQLMAQMSSGDSRFLSVPHEAV 749
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A7S4HUK7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUK7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.240e-28
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFC+DHL+MV +  N+E L LD  FPTT +   G GE+    M+ G+ G EA  Q    +   F WEE+AL R+KQSF  +HE+L K+LEG++TE++ME M+G D RF+SI  + +
Sbjct:  768 REQVELFCVDHLIMVEINCNEESLVLDFVFPTTNVGNTGFGEN----MQLGITGTEAVMQILREILVDFHWEEDALGRSKQSFRSAHESLQKNLEGKTTEVIMEGMTGNDKRFLSIDVDTV 884
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A7S0CAA1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAA1_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.770e-26
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFC+DHL+ V ++ N+E + +D  FPTT +   G GED     E G+ G EA  Q    +   F WEE+AL R+K SF  +HE L K+LEG +TE++ME M+G D RF+SI  + +
Sbjct:   37 REQVELFCVDHLLQVEIQCNEEAIIIDFVFPTTNVGNTGFGEDA----ELGITGTEAVMQILREIIIGFKWEEDALGRSKSSFRSAHEGLQKNLEGMTTELIMETMTGQDERFLSIDVDTV 153
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A6U0SKE1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0SKE1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.440e-26
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFC+DHL+MV +  N+E L +D  FPTT +   G GED    M+ G+ G EA  Q    +   F WEE+AL R KQS+  +HE++ KSLEG+STE +ME M+  D+RF+SI  + +
Sbjct:  509 REQVELFCVDHLLMVEINCNEEALVIDFTFPTTNVGNIGFGED----MKLGITGTEAVMQIVREILIGFHWEEDALGRGKQSYRTAHESMQKSLEGKSTEKIMESMTSQDDRFLSIDVDTV 625
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A7S2EV96_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV96_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.420e-26
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFC+DHL+MV +  N+E L +D  FPTT +   G G    D++E G+ G EA  Q    + A F WEE+AL R+KQS+  +HE+L KSLEG+STE++M  M+  D+R++SI  + +
Sbjct:  521 REQVELFCVDHLLMVEINCNEESLTIDFVFPTTNVGNVGFG----DNVELGITGTEAVLQVVREVIAGFHWEEDALGRSKQSYRSAHESLNKSLEGKSTEMIMAAMTDNDDRYLSIDVDTV 637
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A7S1HIP4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HIP4_HEMAN)

HSP 1 Score: 109 bits (273), Expect = 9.340e-26
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFC+DHLV+  +  N+EFL+L+  FPT K+          DD    ++GME  FQ    L A F WEE+AL+RAKQ+F+Q+HE + KSLE  + E L++ M GGD R++SIP E +
Sbjct:  232 REQVELFCVDHLVVAEIACNEEFLFLEFVFPTNKVSNE------PDD----VSGMEGVFQVVHGLIADFKWEEDALERAKQAFVQTHEQVSKSLEAAAAEHLLDGMCGGDARYLSIPGEKV 342
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A7S0YPB9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YPB9_9CRYP)

HSP 1 Score: 102 bits (253), Expect = 9.600e-26
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNR 336
            R++VELFC+DHLV+  +  N+EFLYL+  FPT K+              G ++GME  FQ    L + FVWEE+AL+RAKQ+F+Q+HE + K LE  + E L+  M GGD R
Sbjct:    7 REQVELFCVDHLVVAEIACNEEFLYLEFVFPTNKVSNE----------PGDVSGMEGVFQVVHGLASDFVWEEDALQRAKQAFVQTHEQVSKGLEAAAAEHLLAEMCGGDPR 108
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BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Match: A0A7S1BTA2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTA2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 9.990e-26
Identity = 55/121 (45.45%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:    1 RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEGGLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTEILMERMSGGDNRFMSIPQEAI 363
            R++VELFC+DHL+MV +  N+EFL  D  FPT ++   G GE+    ++ G+ G EA  Q    +   F WEE+AL R+KQ+F  +H+ L K+LEG +TE LME+M+  D+RF+S+  E I
Sbjct:  370 REQVELFCVDHLIMVEINCNEEFLIFDFVFPTNEVGNVGFGEN----IKMGITGTEAVLQILREIIVGFKWEEDALWRSKQNFYATHDGLSKNLEGMTTEKLMEKMTQNDSRFLSVDHETI 486
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10246.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0R1_ECTSI2.850e-6187.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY0_9PHAE8.290e-6086.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C760_9STRA9.460e-3557.85Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A7S4HUK7_9STRA5.240e-2847.93Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0CAA1_9STRA4.770e-2645.45Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6U0SKE1_9STRA5.440e-2647.11Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2EV96_9STRA7.420e-2646.28Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1HIP4_HEMAN9.340e-2647.11Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0YPB9_9CRYP9.600e-2646.43Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1BTA2_9STRA9.990e-2645.45Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10246contigH-canaliculatus_F_contig10246:3753..4796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue5e-52
Seed eggNOG ortholog2880.D7G0R1
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928653.5481772-CDS-H-canaliculatus_F_contig10246:3752..39541622928653.5481772-CDS-H-canaliculatus_F_contig10246:3752..3954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10246 3753..3954 +
1696845515.163921-CDS-H-canaliculatus_F_contig10246:3752..39541696845515.163921-CDS-H-canaliculatus_F_contig10246:3752..3954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10246 3753..3954 +
1622928653.5629-CDS-H-canaliculatus_F_contig10246:4635..47961622928653.5629-CDS-H-canaliculatus_F_contig10246:4635..4796Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10246 4636..4796 +
1696845515.1743507-CDS-H-canaliculatus_F_contig10246:4635..47961696845515.1743507-CDS-H-canaliculatus_F_contig10246:4635..4796Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10246 4636..4796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10246.259.1prot_H-canaliculatus_F_contig10246.259.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10246 3753..4796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10246.259.1

>prot_H-canaliculatus_F_contig10246.259.1 ID=prot_H-canaliculatus_F_contig10246.259.1|Name=mRNA_H-canaliculatus_F_contig10246.259.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
RQKVELFCIDHLVMVTVEANDEFLYLDLAFPTTKLHGRGMGEDGSDDMEG
GLNGMEAAFQARTFLDAWFVWEEEALKRAKQSFLQSHETLVKSLEGRSTE
ILMERMSGGDNRFMSIPQEAI
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mRNA from alignment at H-canaliculatus_F_contig10246:3753..4796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10246.259.1 ID=mRNA_H-canaliculatus_F_contig10246.259.1|Name=mRNA_H-canaliculatus_F_contig10246.259.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10246:3753..4796+ (Hapterophycus canaliculatus Oshoro5f female)
CGACAAAAGGTTGAGCTCTTCTGCATCGACCACCTCGTCATGGTGACGGT
AGAGGCGAACGACGAGTTCCTCTATCTCGACCTGGCGTTCCCCACCACCA
AGCTCCACGGCCGGGGGATGGGGGAGGACGGCAGCGACGACATGGAAGGG
GGTCTCAACGGCATGGAGGCTGCGTTCCAGGCAAGGACCTTCCTAGATGC
TTGTTGCGTAAGATGGATGTCGTGACGCCAGTCGCTGTTGCAGCGTCAGC
ATCAGCTTTTTCGAGCAGTTCATTTTGAAAGGTTGAAGCATGCCCACGTC
CAATCACCCCTGGGTGAACGGGCACCGTGTTAAAAATTCGTTCATGTGGC
AGAGGATGTCGCGTCTCTATGGGGAAGTTCTCCTGGATCACCCTGTACGA
AGAGCGCAACAGCAACGAATTCGGCTTATTCTGTGTGTGGATTTTCGGTA
CATTCTGGGGACGATGATCATCAAAACCCCAACCCTCGGTAAATGGTGTC
TTCATCACGCCTCGAAATACAAAATGTTTCTGTCCATCCCCCATCCCACG
TTTTTCACGTTTTTGTCCACAACTTGCCTAATGATACATAAGTTCATCCT
GTCACTCGAAGGGAACCCTCACTGAATGGAATTAACGAAAGGCCCTTGAG
ATGGACAAGTTTTTCAGGTGGGTATTCCTTCGGTGCTGTTGACTTGTTGT
ATAGAATTAATCGTTTGTTTGTCACAGTCTTGCCTAGCTTTTTTACTAAA
TCGCTTGGCTGAATTGATGCAGTATGTGTAGACAAGGCGAAAAAACAGTC
GCGTTTGGTTGAGACCCCTGGTTTCTCATCCATTTTTCTTCCTTTCTCAA
ATCCGTTGCAGGTTCTGCACCAGATTCTGTCAGGGTTTGTGTGGGAGGAA
GAGGCGCTGAAGCGAGCCAAGCAGTCGTTCCTCCAGTCTCACGAGACCCT
CGTGAAGAGCCTGGAAGGAAGATCTACGGAGATCTTGATGGAGCGTATGT
CCGGAGGCGACAACCGTTTCATGTCCATCCCGCAGGAAGCTATT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10246:3753..4796+

>mRNA_H-canaliculatus_F_contig10246.259.1 ID=mRNA_H-canaliculatus_F_contig10246.259.1|Name=mRNA_H-canaliculatus_F_contig10246.259.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10246:3753..4796+ (Hapterophycus canaliculatus Oshoro5f female)
CGACAAAAGGTTGAGCTCTTCTGCATCGACCACCTCGTCATGGTGACGGT
AGAGGCGAACGACGAGTTCCTCTATCTCGACCTGGCGTTCCCCACCACCA
AGCTCCACGGCCGGGGGATGGGGGAGGACGGCAGCGACGACATGGAAGGG
GGTCTCAACGGCATGGAGGCTGCGTTCCAGGCAAGGACCTTCCTAGATGC
TTCGACAAAAGGTTGAGCTCTTCTGCATCGACCACCTCGTCATGGTGACG
GTAGAGGCGAACGACGAGTTCCTCTATCTCGACCTGGCGTTCCCCACCAC
CAAGCTCCACGGCCGGGGGATGGGGGAGGACGGCAGCGACGACATGGAAG
GGGGTCTCAACGGCATGGAGGCTGCGTTCCAGGCAAGGACCTTCCTAGAT
GCTTGGTTTGTGTGGGAGGAAGAGGCGCTGAAGCGAGCCAAGCAGTCGTT
CCTCCAGTCTCACGAGACCCTCGTGAAGAGCCTGGAAGGAAGATCTACGG
AGATCTTGATGGAGCGTATGTCCGGAGGCGACAACCGTTTCATGTCCATC
CCGCAGGAAGCTATTGGTTTGTGTGGGAGGAAGAGGCGCTGAAGCGAGCC
AAGCAGTCGTTCCTCCAGTCTCACGAGACCCTCGTGAAGAGCCTGGAAGG
AAGATCTACGGAGATCTTGATGGAGCGTATGTCCGGAGGCGACAACCGTT
TCATGTCCATCCCGCAGGAAGCTATT
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