mRNA_H-canaliculatus_F_contig10241.256.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10241.256.1
Unique NamemRNA_H-canaliculatus_F_contig10241.256.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10241.256.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.830e-11
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = -2 
Query:    3 GAVPS--EEVAELGDVLTSFRRRQSLGQAEDRARGLLPSSVDLGRFATDERYR 155
            GA+P+  EE+ EL  V+TSFR+RQSLG AE++ARG+LP++VDLGRFA D RYR
Sbjct: 2211 GALPAVEEEIEELLAVITSFRQRQSLGLAEEKARGVLPATVDLGRFAGDPRYR 2263
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BLAST of mRNA_H-canaliculatus_F_contig10241.256.1 vs. uniprot
Match: A0A6H5JKW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.810e-10
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = -2 
Query:    3 EEVAELGDVLTSFRRRQSLGQAEDRARGLLPSSVDLGRFATDERYR 140
            EE+ EL  V+TSFR+RQSLG AE++ARG+LP++VDLGRFA D RYR
Sbjct:  934 EEMEELLAVITSFRQRQSLGLAEEKARGILPATVDLGRFAGDPRYR 979
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10241.256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI79_ECTSI2.830e-1166.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW6_9PHAE1.810e-1069.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10241contigH-canaliculatus_F_contig10241:493..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928653.3527853-CDS-H-canaliculatus_F_contig10241:492..8311622928653.3527853-CDS-H-canaliculatus_F_contig10241:492..831Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10241 493..831 +
1696845515.0804005-CDS-H-canaliculatus_F_contig10241:492..8311696845515.0804005-CDS-H-canaliculatus_F_contig10241:492..831Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10241 493..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10241.256.1prot_H-canaliculatus_F_contig10241.256.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10241 493..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10241.256.1

>prot_H-canaliculatus_F_contig10241.256.1 ID=prot_H-canaliculatus_F_contig10241.256.1|Name=mRNA_H-canaliculatus_F_contig10241.256.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
CRYRSSVANLPRSTDDGRSPLALSSACPKLCRRRNDVSTSPSSATSSEGT
APTPPAAAPPPSPVADRRARTYASRATATLPRKRVAAATAAAAARSASPA
PCPARASVAPASP
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mRNA from alignment at H-canaliculatus_F_contig10241:493..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10241.256.1 ID=mRNA_H-canaliculatus_F_contig10241.256.1|Name=mRNA_H-canaliculatus_F_contig10241.256.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=339bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10241:493..831+ (Hapterophycus canaliculatus Oshoro5f female)
TGCCGGTACCGCTCATCCGTGGCGAACCTTCCTAGGTCCACGGACGACGG
CAGGAGCCCCCTCGCCCTGTCCTCCGCCTGCCCCAAGCTCTGCCGCCGCC
GGAACGACGTGAGCACATCCCCGAGCTCCGCCACTTCCTCGGAGGGGACA
GCACCGACACCGCCGGCCGCCGCGCCGCCGCCCTCTCCGGTCGCCGACAG
ACGTGCGCGGACGTACGCCTCTAGGGCTACAGCCACCCTTCCGCGCAAGC
GCGTCGCAGCTGCCACCGCCGCCGCCGCCGCTCGCTCCGCTTCCCCCGCA
CCCTGCCCTGCCCGGGCGTCTGTGGCGCCCGCATCCCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10241:493..831+

>mRNA_H-canaliculatus_F_contig10241.256.1 ID=mRNA_H-canaliculatus_F_contig10241.256.1|Name=mRNA_H-canaliculatus_F_contig10241.256.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10241:493..831+ (Hapterophycus canaliculatus Oshoro5f female)
TGCCGGTACCGCTCATCCGTGGCGAACCTTCCTAGGTCCACGGACGACGG
CAGGAGCCCCCTCGCCCTGTCCTCCGCCTGCCCCAAGCTCTGCCGCCGCC
GGAACGACGTGAGCACATCCCCGAGCTCCGCCACTTCCTCGGAGGGGACA
GCACCGACACCGCCGGCCGCCGCGCCGCCGCCCTCTCCGGTCGCCGACAG
ACGTGCGCGGACGTACGCCTCTAGGGCTACAGCCACCCTTCCGCGCAAGC
GCGTCGCAGCTGCCACCGCCGCCGCCGCCGCTCGCTCCGCTTCCCCCGCA
CCCTGCCCTGCCCGGGCGTCTGTGGCGCCCGCATCCCCGTGCCGGTACCG
CTCATCCGTGGCGAACCTTCCTAGGTCCACGGACGACGGCAGGAGCCCCC
TCGCCCTGTCCTCCGCCTGCCCCAAGCTCTGCCGCCGCCGGAACGACGTG
AGCACATCCCCGAGCTCCGCCACTTCCTCGGAGGGGACAGCACCGACACC
GCCGGCCGCCGCGCCGCCGCCCTCTCCGGTCGCCGACAGACGTGCGCGGA
CGTACGCCTCTAGGGCTACAGCCACCCTTCCGCGCAAGCGCGTCGCAGCT
GCCACCGCCGCCGCCGCCGCTCGCTCCGCTTCCCCCGCACCCTGCCCTGC
CCGGGCGTCTGTGGCGCCCGCATCCCCG
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