mRNA_H-canaliculatus_F_contig1024.254.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1024.254.1 vs. uniprot
Match: D8LJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE2_ECTSI) HSP 1 Score: 598 bits (1542), Expect = 1.020e-196 Identity = 421/808 (52.10%), Postives = 478/808 (59.16%), Query Frame = 1
Query: 664 GHRAQVQCLSIDGRGELLLTGDESGTICARLLHSSSPAGRQDFQDVGHQSSEFGVEGGSQSRDGXXXXXXX----VAKVVDGAHAGGIQAISHVDGSHVEGSSRSAEGGRGDSS-ALFVSGGKGGVVRLWRATWPGKVQGAVGT-------KLHVELVNDMLVGDFQVACLAASLSLRTPLVLAGTVEGTVFAFHLRQRESSNETIRENEGQSDGGGGYXXXXXXXXGDMLGGASGMQVMRPDGTVGKTELGVLLMKFEHTRTPIEGVCCSQEQELFAATDADGIVRTYRPAL-RDSAKDSADAVGVLGGRPSRPLSQEDDVAPATPRSFELVVECRLGHPPASCEFAFEPAGESTGPERR--VGGLGQEVLRTCTTSGSVRAWPTASLPARPVRPSQPPXXXSEAPAPATLGGEHEAAAPLSQSSSNTVAAGDGDGMDAGGNETGGMLPT---------------AGGMEQENRDPSDPFARWGSIGAEGRGIGGSGAVQREGVEDDELVARRGPPLPKAHPAAARRVSFAPADEVYSLQDPYYGSSVRWDREDGRESKEDANDEFG---------ELETPRPXXXXXXXXXATGDASGPLRSGQTWGASSSWRGGGGXXXXXXXSSRGSTDASSGLGQSGVYVAPSKLQEASLWSTAMEQAALERRMREASAKTSGFDAGVEPEPTAPVYRAAAAAAVNIPPTARTFEGLVPVSLDAPLPRPKRAGKQARNKSHLSKVQEQRITEEDLAFDGMEPDSSSILGFGSAS-GRMWSHEELEWYGGRSMFAELERSSVASDRVWELGRRI 2967
G R +V CLSID RGELL+TGDESG ICARLLH S G++S + G GS S +GXXXXXXX VA+VV AH+G + AISHV EGG GD ALFVSGGKGGVVRLW+A + + V ++HVEL+ DMLVG FQV+CLAASLS P+VLAGT EGTVFAFHL Q + ++ R+ E + D GG+ RPD VG+TELG +LMKFEHT P+E VCCSQEQEL AATDA GIVRTYRP L R + D+ + G + A A R FELVVECRLG P SCEF P G +G +RR VGG G EVLRTCT G +R WPTASLP RP+RP PP AP L HEA APL S+ G D A G EQENRDPSDPF+RW +I A+GRG G G EG E++E AR PPLPKA PAA RRVSFAPAD+VY L+DPYYGS EL PR XXX A+G P R QTWG S+S SR +S+ +VAPS++QE SLWSTA EQA LERRM T FD PEP APVYRAAAAAAVNI P A+TFEGLVPVSLDAP PRPKR GKQ +KSHLSKVQEQRITEEDLAFDGMEPD S+I+GFGS++ GRMW HEELEWYGGR MFAEL+RSS ASDRVW LGRR+
Sbjct: 12 GRRQKVGCLSIDRRGELLVTGDESGAICARLLHHS-----------GNRSGD-GTACGSSSVEGXXXXXXXXXXXVAEVVREAHSGEVLAISHV------------EGGAGDDDPALFVSGGKGGVVRLWKAACLERSRETVAAGGGGGDLEVHVELLKDMLVGGFQVSCLAASLSPTVPIVLAGTAEGTVFAFHLLQAQEPSDR-RDREAEDDRPTVGRPTVGYGDRGSRGGSVASGRERPDNAVGRTELGAVLMKFEHTSEPVERVCCSQEQELIAATDAAGIVRTYRPLLPRGGSTDNNPSDG----------APPTAAAAAEARRFELVVECRLGARPVSCEFGSGPRGVESGGDRRRGVGGEG-EVLRTCTARGVLRLWPTASLPTRPMRP--PPSS-----APTRLPDYHEALAPLPHPSNA--------GTDXXXXXXXXXXXXXXXXXXXXXXXXXAMAAGTEQENRDPSDPFSRWTAIDAKGRGPGLVGVGGGEGGEEEEPSARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELGAPRXXXXAPTPMRASGATGPPRRLRQTWGTSAS----------SPRGSRARRGSSTDASDDASFVAPSRMQEPSLWSTAAEQAELERRM------TEEFDGSGVPEPVAPVYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPKRKGKQV-SKSHLSKVQEQRITEEDLAFDGMEPDCSAIIGFGSSTAGRMWPHEELEWYGGRKMFAELDRSSTASDRVWSLGRRL 751
BLAST of mRNA_H-canaliculatus_F_contig1024.254.1 vs. uniprot
Match: A0A6H5L2I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I0_9PHAE) HSP 1 Score: 538 bits (1385), Expect = 9.290e-174 Identity = 407/790 (51.52%), Postives = 456/790 (57.72%), Query Frame = 1
Query: 679 VQCLSIDGRGELLLTGDESGTICARLLHSSSPAGRQDFQDVGHQSSEFGVEGGSQSRDGXXXXXXXVAKVVDGAHAGGIQAISHVDGSHVEGSSRSAEGGRGDSS-ALFVSGGKGGVVRLWRATW--PGKVQGAVG-----TKLHVELVNDMLVGDFQVACLAASLSLRTPLVLAGTVEGTVFAFHLRQRESSNETIRENEGQSDGGGGYXXXXXXXXGDM--LGGASGMQVMRPDGTVGKTELGVLLMKFEHTRTPIEGVCCSQEQELFAATDADGIVRTYRPALRDSAKDSADAVGVLGGRPSRPLSQEDDVAPATPRSFELVVECRLG-HPPASCEFAFEPAGESTGPERRVGGLGQEVLRTCTTSGSVRAWPTASLPARPVRPSQPPXXXSEAPAPATLGGEHEAAAPLSQSSSNTVAAGDGDGMDAGGNETGGMLPTAG----------GMEQENRDPSDPFARWGSIGAEGRGIGGSGAVQREGVEDDELVARRGPPLPKAHPAAARRVSFAPADEVYSLQDPYYGSSVRWDREDGRESKEDANDEFGELETPRPXXXXXXXXXATGDASG----PLRSGQTWGASSSWRGGGGXXXXXXXSSRG-STDASSGLGQSGVYVAPSKLQEASLWSTAMEQAALERRMREASAKTSGFDAGVEPEPTAPVYRAAAAAAVNIPPTARTFEGLVPVSLDAPLPRPKRAGKQARNKSHLSKVQEQRITEEDLAFDGMEPDSSSILGFGSAS-GRMWSHEELEWYGGRSMFAELERSSVASDRVWELGRRI 2967
V CLSID RGELL+TGDESG ICARLLH S G + + SS F EGG XXXXXVA+V+ AH+G + AISHV EGG GD ALFVSGGKGGVVRLW+A + A G ++ VEL+ DMLVG FQV+CLAASLS P+VLAGT EGTVFAFHL Q + ++ R+ E + D GD GG++ PD VG+TELG +LMKFEHT PIEGVCCSQEQEL AATDA GIVRTYRP L + S D G P+ A A R FELVVECRLG P VGG G EVLRTCT G +R W TASLP RP+RP AP L +HEA APL +S+ G D+ G EQENRDPSDPF+R +I A G G G G E E+ EL AR PPLPKA PAA RRVSFAPAD+VY L+DPYYGS XXXXXXXXX ASG P R QTWG S+S + RG S DAS +VAPS++QE SLWSTA EQ LERRM EA T FD G PEP AP YRAAAAAAVNI P A+TFEGLVPVSLDAP PRP R GKQ +K HLSKVQEQRITEEDLAFDGMEPD S I+GFGS++ GRMW +EELEWYGGR M AEL+ SS ASDRVW LGRR+
Sbjct: 5 VGCLSIDRRGELLVTGDESGAICARLLHHS---GNRSGDGTAYGSSSF--EGGPSXX----XXXXXVAEVLREAHSGEVLAISHV------------EGGAGDDDPALFVSGGKGGVVRLWKAACLERSRETAAAGGSGGDLEVQVELLKDMLVGGFQVSCLAASLSPTVPIVLAGTAEGTVFAFHLLQAQEPSDR-RDGEAEDD-------RPAVGYGDRGGRGGSAASGREPPDDAVGRTELGAVLMKFEHTSEPIEGVCCSQEQELIAATDAAGIVRTYRPLL--PRRVSTDNNPGDGAPPTT-------AAAAEARRFELVVECRLGARPVXXXXXXXXXXXXXXXXXXXVGGEG-EVLRTCTARGILRLWLTASLPTRPMRPPX-------XSAPTRLPDDHEALAPLPHTSNA--------GTDSSXXXXXXXXXXXXXXXXXXXXXVGAEQENRDPSDPFSRSTAIDATGSGSGVVGVGGGERGEEVELTARGEPPLPKARPAAPRRVSFAPADQVYKLEDPYYGSGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRASGANGTPGRLRQTWGTSTS-------SPRSNRARRGCSMDASDDA-----FVAPSRMQEPSLWSTAAEQVELERRMTEA---THEFDGGAVPEPAAPTYRAAAAAAVNIHPLAKTFEGLVPVSLDAPPPRPMRKGKQV-SKRHLSKVQEQRITEEDLAFDGMEPDCSVIMGFGSSTVGRMWPYEELEWYGGRKMSAELDHSSTASDRVWSLGRRL 724
BLAST of mRNA_H-canaliculatus_F_contig1024.254.1 vs. uniprot
Match: A0A836CAG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG1_9STRA) HSP 1 Score: 116 bits (291), Expect = 9.640e-23 Identity = 148/518 (28.57%), Postives = 200/518 (38.61%), Query Frame = 1
Query: 253 MVGLCSAGGSFIIFDRESTTAIDSFAVYFNTLPVHLWGRGARDGDGQQSTPRPVASAPARRVPHAWSQASFVPGRPGEIVFVQGWSYRVLWARLPEGEGRRTAAAAKMSRS-ERLGSPEV-ATGGRFGLVDGSRVVALEGHRAQVQCLSIDGRGELLLTGDESGTICARLLHSSSPAGRQDFQDVGHQSSEFGVEGGSQSRDGXXXXXXXVAKVVDGAHAGGIQAISHVDGSHVEGSSRSAEGGRGDSSALFVSGGKGGVVRLWRATWPGKVQGAVGTKLHVELVNDMLVGDFQVACLAASLSLRTPLVLAGTVEGTVFAFHLRQRESSNETIRENEGQSDGGGGYXXXXXXXXGDMLGGASGMQVMRPDGTVGKTELGV-LLMKFEHTRTPIEGVCCSQEQELFAATDADGIVRTYRPALRDSAKDSADAVGVLGGRPSRPLSQEDDVAPATPRSFELVVECRLGHPPASCEFAFEPAGESTGPERRVGGLGQEVLRTCTTSGSVRAWPTASLPARP 1797
M+GLC GGS + D ++ + TL V+ + GQ+S RRV S F+ GR GE FVQG S RVL + LP+ + S +R G A+ R+ +DGSRVV L H AQ S C +L + V QSS+F + +++ AG + A +HV ++A FV+GG GVVR+W VQ +L + + ++ G QV LAA+ +V+AG++EGTVFAF ++DGG G G+S PD V G L+ EHT PI G+ CS EQ+L A DA G VR YRP + G L R L + A A + + E +LG A CEF GE L C+ G VR WPTA+LP P
Sbjct: 1 MLGLCGQGGSLQLLDADAAIETE----VHRTLGVYFSNVPFPNAVGQRSE---------RRVNEPISMLHFIAGRIGEFAFVQGRSERVLLSALPDAPSPLRPVREPVRASLDRAGDDSACASASRWSFLDGSRVVELVKHTAQ-----------------GSSKPCESILRVRQVR-KTRRSIVAAQSSQF---------TSPLQLYHVLTRLL--IPAGPVFAAAHVPVPPAA------------AAARFVTGGSDGVVRMWG------VQVGESGELKLAPLRELQAGGCQVTALAANAR----MVVAGSLEGTVFAF-----------------RADGGRGAAAAPDD-------GSSAP----PDQEVETVVDGQPLIFMLEHTTQPIVGIACSSEQQLTVAADATGAVRLYRPQPDERR-------GQL-----RQLRTPAERAAAL--RWRTIAEMQLGSAAAGCEFGAASQGER--------------LAACSAEGLVRIWPTAALPLEP 398 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1024.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1024.254.1 >prot_H-canaliculatus_F_contig1024.254.1 ID=prot_H-canaliculatus_F_contig1024.254.1|Name=mRNA_H-canaliculatus_F_contig1024.254.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=950bp MAHDILSWDEAEETGLRLCSEIDTDALSPPTTVTACCWDTNSPGMVGLCSback to top mRNA from alignment at H-canaliculatus_F_contig1024:22397..31375+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1024.254.1 ID=mRNA_H-canaliculatus_F_contig1024.254.1|Name=mRNA_H-canaliculatus_F_contig1024.254.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8979bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1024:22397..31375+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1024:22397..31375+ >mRNA_H-canaliculatus_F_contig1024.254.1 ID=mRNA_H-canaliculatus_F_contig1024.254.1|Name=mRNA_H-canaliculatus_F_contig1024.254.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5700bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1024:22397..31375+ (Hapterophycus canaliculatus Oshoro5f female)back to top |