mRNA_H-canaliculatus_F_contig10239.252.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10239.252.1
Unique NamemRNA_H-canaliculatus_F_contig10239.252.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10239.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10239contigH-canaliculatus_F_contig10239:3950..5003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1054
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10239.252.1prot_H-canaliculatus_F_contig10239.252.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10239 4120..4944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928652.109471-UTR-H-canaliculatus_F_contig10239:3949..41191622928652.109471-UTR-H-canaliculatus_F_contig10239:3949..4119Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10239 3950..4119 +
1696845514.5938127-UTR-H-canaliculatus_F_contig10239:3949..41191696845514.5938127-UTR-H-canaliculatus_F_contig10239:3949..4119Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10239 3950..4119 +
1622928652.1317334-UTR-H-canaliculatus_F_contig10239:4944..50031622928652.1317334-UTR-H-canaliculatus_F_contig10239:4944..5003Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10239 4945..5003 +
1696845514.612209-UTR-H-canaliculatus_F_contig10239:4944..50031696845514.612209-UTR-H-canaliculatus_F_contig10239:4944..5003Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10239 4945..5003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928652.119199-CDS-H-canaliculatus_F_contig10239:4119..49441622928652.119199-CDS-H-canaliculatus_F_contig10239:4119..4944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10239 4120..4944 +
1696845514.6027682-CDS-H-canaliculatus_F_contig10239:4119..49441696845514.6027682-CDS-H-canaliculatus_F_contig10239:4119..4944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10239 4120..4944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10239.252.1

>prot_H-canaliculatus_F_contig10239.252.1 ID=prot_H-canaliculatus_F_contig10239.252.1|Name=mRNA_H-canaliculatus_F_contig10239.252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=275bp
MRRPSGSASDPSDFELAARLLHFPPPPPGLTACSTCSLSKLRGPLDRGVR
EERDTAYCAAFAAPIFGVSPPTRARAAKPQAFERLNPPQPQPKSTRATGG
GGGTRPPVIRRARLVVFSFRALPPWGLPFDAVSSLVRQIGAKHHSSKSGR
SSLDDPAADTNQPAKSNRIVLDTAAVVVVYAACLLLVAPRESFDSTACPR
VTTLHACRRISLLIPLAIGVEYEQPYPTDMLSGNVIYLPPVLYRLRQGEN
TGKISAPYNTPRHAFHHKESLVSK*
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mRNA from alignment at H-canaliculatus_F_contig10239:3950..5003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10239.252.1 ID=mRNA_H-canaliculatus_F_contig10239.252.1|Name=mRNA_H-canaliculatus_F_contig10239.252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1054bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10239:3950..5003+ (Hapterophycus canaliculatus Oshoro5f female)
TTGCTCAGTTGCTGCGCGGTAAATGCACGCGGGGAATACGGACGCGACGC
GAATATCACCATGATACATGCGGCTTGAAGGGAGTACTCGTACGTAAAAT
ATTTCAACCCTCCCGCCGCCAAATCAAACTCGTCCTGATCGCCCCCGCCG
CCGGCTACTGAAGGCGCTACATGCGTCGTCCAAGTGGCTCCGCGTCCGAC
CCCTCCGACTTCGAGCTCGCCGCCCGCCTCCTTCATTTCCCACCACCACC
GCCCGGGCTGACCGCTTGTTCAACGTGCTCTCTCTCTAAACTGCGGGGCC
CCCTCGACAGGGGGGTGCGAGAGGAACGGGACACGGCTTACTGTGCGGCT
TTCGCTGCCCCGATCTTCGGCGTTTCCCCTCCCACCCGGGCCAGAGCAGC
GAAACCGCAAGCCTTCGAACGACTCAACCCGCCCCAACCGCAGCCAAAGT
CTACACGTGCGACCGGGGGGGGAGGGGGAACTCGACCGCCGGTGATCCGT
CGGGCTCGGTTAGTCGTTTTTTCGTTTCGGGCTCTCCCGCCGTGGGGGTT
GCCGTTTGACGCGGTCTCTTCCCTAGTGCGTCAAATCGGTGCAAAACACC
ACTCGTCTAAATCTGGTCGCTCTTCTCTCGACGACCCCGCCGCGGACACG
AATCAACCGGCAAAGTCGAACAGAATCGTACTAGATACTGCTGCGGTTGT
TGTGGTGTACGCGGCGTGTTTGTTGCTTGTCGCTCCACGTGAAAGCTTCG
ACTCGACGGCTTGCCCCCGCGTCACGACGTTGCATGCATGCCGCCGGATC
AGCCTCCTCATCCCCTTGGCCATCGGGGTCGAGTACGAGCAGCCTTATCC
CACAGACATGCTTTCCGGCAATGTAATCTACCTACCGCCCGTTCTCTACC
GTCTTCGACAAGGCGAAAACACGGGTAAAATCTCTGCCCCCTACAATACC
CCGAGACATGCATTTCACCACAAAGAAAGCCTTGTATCAAAATAAATGCC
GTGCAAAGCACTCCATTCGCGCCCACTCCCAGCATGGCCCTGACTCGAGT
CTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10239:3950..5003+

>mRNA_H-canaliculatus_F_contig10239.252.1 ID=mRNA_H-canaliculatus_F_contig10239.252.1|Name=mRNA_H-canaliculatus_F_contig10239.252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1650bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10239:3950..5003+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTCGTCCAAGTGGCTCCGCGTCCGACCCCTCCGACTTCGAGCTCGC
CGCCCGCCTCCTTCATTTCCCACCACCACCGCCCGGGCTGACCGCTTGTT
CAACGTGCTCTCTCTCTAAACTGCGGGGCCCCCTCGACAGGGGGGTGCGA
GAGGAACGGGACACGGCTTACTGTGCGGCTTTCGCTGCCCCGATCTTCGG
CGTTTCCCCTCCCACCCGGGCCAGAGCAGCGAAACCGCAAGCCTTCGAAC
GACTCAACCCGCCCCAACCGCAGCCAAAGTCTACACGTGCGACCGGGGGG
GGAGGGGGAACTCGACCGCCGGTGATCCGTCGGGCTCGGTTAGTCGTTTT
TTCGTTTCGGGCTCTCCCGCCGTGGGGGTTGCCGTTTGACGCGGTCTCTT
CCCTAGTGCGTCAAATCGGTGCAAAACACCACTCGTCTAAATCTGGTCGC
TCTTCTCTCGACGACCCCGCCGCGGACACGAATCAACCGGCAAAGTCGAA
CAGAATCGTACTAGATACTGCTGCGGTTGTTGTGGTGTACGCGGCGTGTT
TGTTGCTTGTCGCTCCACGTGAAAGCTTCGACTCGACGGCTTGCCCCCGC
GTCACGACGTTGCATGCATGCCGCCGGATCAGCCTCCTCATCCCCTTGGC
CATCGGGGTCGAGTACGAGCAGCCTTATCCCACAGACATGCTTTCCGGCA
ATGTAATCTACCTACCGCCCGTTCTCTACCGTCTTCGACAAGGCGAAAAC
ACGGGTAAAATCTCTGCCCCCTACAATACCCCGAGACATGCATTTCACCA
CAAAGAAAGCCTTGTATCAAAATAAATGCGTCGTCCAAGTGGCTCCGCGT
CCGACCCCTCCGACTTCGAGCTCGCCGCCCGCCTCCTTCATTTCCCACCA
CCACCGCCCGGGCTGACCGCTTGTTCAACGTGCTCTCTCTCTAAACTGCG
GGGCCCCCTCGACAGGGGGGTGCGAGAGGAACGGGACACGGCTTACTGTG
CGGCTTTCGCTGCCCCGATCTTCGGCGTTTCCCCTCCCACCCGGGCCAGA
GCAGCGAAACCGCAAGCCTTCGAACGACTCAACCCGCCCCAACCGCAGCC
AAAGTCTACACGTGCGACCGGGGGGGGAGGGGGAACTCGACCGCCGGTGA
TCCGTCGGGCTCGGTTAGTCGTTTTTTCGTTTCGGGCTCTCCCGCCGTGG
GGGTTGCCGTTTGACGCGGTCTCTTCCCTAGTGCGTCAAATCGGTGCAAA
ACACCACTCGTCTAAATCTGGTCGCTCTTCTCTCGACGACCCCGCCGCGG
ACACGAATCAACCGGCAAAGTCGAACAGAATCGTACTAGATACTGCTGCG
GTTGTTGTGGTGTACGCGGCGTGTTTGTTGCTTGTCGCTCCACGTGAAAG
CTTCGACTCGACGGCTTGCCCCCGCGTCACGACGTTGCATGCATGCCGCC
GGATCAGCCTCCTCATCCCCTTGGCCATCGGGGTCGAGTACGAGCAGCCT
TATCCCACAGACATGCTTTCCGGCAATGTAATCTACCTACCGCCCGTTCT
CTACCGTCTTCGACAAGGCGAAAACACGGGTAAAATCTCTGCCCCCTACA
ATACCCCGAGACATGCATTTCACCACAAAGAAAGCCTTGTATCAAAATAA
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