mRNA_H-canaliculatus_F_contig10239.251.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10239.251.1
Unique NamemRNA_H-canaliculatus_F_contig10239.251.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10239.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10239contigH-canaliculatus_F_contig10239:430..891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10239.251.1prot_H-canaliculatus_F_contig10239.251.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10239 463..810 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928652.0536785-UTR-H-canaliculatus_F_contig10239:429..4621622928652.0536785-UTR-H-canaliculatus_F_contig10239:429..462Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10239 430..462 +
1696845514.5632107-UTR-H-canaliculatus_F_contig10239:429..4621696845514.5632107-UTR-H-canaliculatus_F_contig10239:429..462Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10239 430..462 +
1622928652.0762854-UTR-H-canaliculatus_F_contig10239:810..8911622928652.0762854-UTR-H-canaliculatus_F_contig10239:810..891Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10239 811..891 +
1696845514.582467-UTR-H-canaliculatus_F_contig10239:810..8911696845514.582467-UTR-H-canaliculatus_F_contig10239:810..891Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10239 811..891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928652.0651414-CDS-H-canaliculatus_F_contig10239:462..8101622928652.0651414-CDS-H-canaliculatus_F_contig10239:462..810Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10239 463..810 +
1696845514.5723696-CDS-H-canaliculatus_F_contig10239:462..8101696845514.5723696-CDS-H-canaliculatus_F_contig10239:462..810Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10239 463..810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10239.251.1

>prot_H-canaliculatus_F_contig10239.251.1 ID=prot_H-canaliculatus_F_contig10239.251.1|Name=mRNA_H-canaliculatus_F_contig10239.251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MQAEHSREQGGTKVATLFCASVCRLCDGLGVRTFVAFDLVWQSIFPLVVV
VKWPLNQTKWIFLGDLAPPPKDKVVGIRGGSKTKKEGEEFNKIILSRYKF
CLSGGCSFGGVDSFS*
back to top

mRNA from alignment at H-canaliculatus_F_contig10239:430..891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10239.251.1 ID=mRNA_H-canaliculatus_F_contig10239.251.1|Name=mRNA_H-canaliculatus_F_contig10239.251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=462bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10239:430..891+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCGGCAGCGGCAGCAACCGTTTCCTCCCGTCATGCAAGCGGAACATTC GAGAGAGCAGGGAGGAACAAAAGTGGCGACTCTTTTTTGTGCGTCTGTGT GCCGTCTTTGTGATGGACTCGGGGTTCGCACATTCGTCGCATTCGATCTT GTCTGGCAATCAATCTTTCCGTTGGTCGTCGTTGTCAAATGGCCATTGAA CCAAACAAAGTGGATTTTTCTCGGGGATCTCGCGCCCCCTCCGAAGGATA AGGTAGTAGGGATACGTGGGGGTTCGAAAACGAAGAAAGAAGGTGAGGAA TTCAACAAAATCATCCTGAGTCGCTATAAATTCTGTCTCAGCGGAGGGTG TTCCTTTGGTGGTGTTGATTCTTTCTCATAAAAAAAAAAGGGAAAAAGCG GCACGAAAGCCTGTCCAACCTCAAAACACAGGAGGAGAGCAACGAGCGAC ATGAACCAAGAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10239:430..891+

>mRNA_H-canaliculatus_F_contig10239.251.1 ID=mRNA_H-canaliculatus_F_contig10239.251.1|Name=mRNA_H-canaliculatus_F_contig10239.251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10239:430..891+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAAGCGGAACATTCGAGAGAGCAGGGAGGAACAAAAGTGGCGACTCT
TTTTTGTGCGTCTGTGTGCCGTCTTTGTGATGGACTCGGGGTTCGCACAT
TCGTCGCATTCGATCTTGTCTGGCAATCAATCTTTCCGTTGGTCGTCGTT
GTCAAATGGCCATTGAACCAAACAAAGTGGATTTTTCTCGGGGATCTCGC
GCCCCCTCCGAAGGATAAGGTAGTAGGGATACGTGGGGGTTCGAAAACGA
AGAAAGAAGGTGAGGAATTCAACAAAATCATCCTGAGTCGCTATAAATTC
TGTCTCAGCGGAGGGTGTTCCTTTGGTGGTGTTGATTCTTTCTCATAAAT
GCAAGCGGAACATTCGAGAGAGCAGGGAGGAACAAAAGTGGCGACTCTTT
TTTGTGCGTCTGTGTGCCGTCTTTGTGATGGACTCGGGGTTCGCACATTC
GTCGCATTCGATCTTGTCTGGCAATCAATCTTTCCGTTGGTCGTCGTTGT
CAAATGGCCATTGAACCAAACAAAGTGGATTTTTCTCGGGGATCTCGCGC
CCCCTCCGAAGGATAAGGTAGTAGGGATACGTGGGGGTTCGAAAACGAAG
AAAGAAGGTGAGGAATTCAACAAAATCATCCTGAGTCGCTATAAATTCTG
TCTCAGCGGAGGGTGTTCCTTTGGTGGTGTTGATTCTTTCTCATAA
back to top