mRNA_H-canaliculatus_F_contig10230.249.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10230.249.1
Unique NamemRNA_H-canaliculatus_F_contig10230.249.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10230.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10230contigH-canaliculatus_F_contig10230:2479..4952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1863
Cds size969
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10230.249.1prot_H-canaliculatus_F_contig10230.249.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10230 2479..4058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.7707648-CDS-H-canaliculatus_F_contig10230:2478..25581622928651.7707648-CDS-H-canaliculatus_F_contig10230:2478..2558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10230 2479..2558 +
1696845514.4937315-CDS-H-canaliculatus_F_contig10230:2478..25581696845514.4937315-CDS-H-canaliculatus_F_contig10230:2478..2558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10230 2479..2558 +
1622928651.7874005-CDS-H-canaliculatus_F_contig10230:3149..39171622928651.7874005-CDS-H-canaliculatus_F_contig10230:3149..3917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10230 3150..3917 +
1696845514.5038218-CDS-H-canaliculatus_F_contig10230:3149..39171696845514.5038218-CDS-H-canaliculatus_F_contig10230:3149..3917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10230 3150..3917 +
1622928651.919943-CDS-H-canaliculatus_F_contig10230:3937..40581622928651.919943-CDS-H-canaliculatus_F_contig10230:3937..4058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10230 3938..4058 +
1696845514.512808-CDS-H-canaliculatus_F_contig10230:3937..40581696845514.512808-CDS-H-canaliculatus_F_contig10230:3937..4058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10230 3938..4058 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.9330196-UTR-H-canaliculatus_F_contig10230:4058..49521622928651.9330196-UTR-H-canaliculatus_F_contig10230:4058..4952Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10230 4059..4952 +
1696845514.5228076-UTR-H-canaliculatus_F_contig10230:4058..49521696845514.5228076-UTR-H-canaliculatus_F_contig10230:4058..4952Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10230 4059..4952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10230.249.1

>prot_H-canaliculatus_F_contig10230.249.1 ID=prot_H-canaliculatus_F_contig10230.249.1|Name=mRNA_H-canaliculatus_F_contig10230.249.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=323bp
RSVGPTLPAHGRQRRRPRAGLPSLSASSSSNGKRSSSGRRCCASPRRHQS
RLSLSLSLSSRQRRPYRLRKTSLRRHPRVHSGWSRHRSSSRRSRSRRRKT
RGSSSISSTFSSSYNNTCCTSRRCSSKHYSNSNSNSSNSSQPPPFLLLLL
LHGRSCRRRRRLARSTSNGTPLSKLRSSRRITRPCAPPPPPPPPPPPHPQ
VEYWGSGLLSRLLRPRLPLRSLPLLRPSPISTRGTACISRQRSRRPTQTR
PRRRRLLRRISSSNRWRLRPRRRKRRRQRALRRWVQQQLLAQQQQQQQQQ
QQGDGAANGTGQGPYSQYRGPS*
back to top

mRNA from alignment at H-canaliculatus_F_contig10230:2479..4952+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10230.249.1 ID=mRNA_H-canaliculatus_F_contig10230.249.1|Name=mRNA_H-canaliculatus_F_contig10230.249.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10230:2479..4952+ (Hapterophycus canaliculatus Oshoro5f female)
CGATCGGTAGGACCGACTCTGCCGGCGCACGGACGGCAGCGGCGCCGGCC
GCGAGCCGGGCTGCCGAGTCTATCAGCCAGGTAAGTGTGAGGGTCACGAG
CAGCACCCGCGACCGGTACTCACGGTCACGAAGCTTAGAGTCCACCGCCA
TGTTTTCCAGCGTCAGCATGTTTCCCTATCGTTTTTTTTTGTTTTTTCGC
GGGATGCGGCCTCCGAGCAGAAGCTCTTCCGCGCACGACGAAGAAGCATC
AGCTACTTATAGTCCACCGAATTTTCTCTTTTCGGTGTCTGCGAGGCGGA
AAAGAAAGTTGACCTCTCGCCAAACAGGAGACGGAGCATGTCAGTCCCGC
AACTCCCCTGTCGCGAGACTGGCGCCGGAAGCGCGACCAGGTCTAATCAT
GTCCCCGGCACGTATTTATAGCGAGGAGGGTATGTGTCCCACGCTCTGCT
CCCCGGCAGAAGCCTATGAACAGATGTCTGGAGCCAGCAGTCTAGAAGCC
AAGGTTGTTCTCTATGCCGGGCTAGAGTTGGAGGATTCTAGCGTAGCATG
GATTGCCTGCTTCTCTCGTCCCCGACCCCTTCCTGCGTGGCTCGCTTCGC
GTTCCTCGTCTCAAATCGCCCTCCCTCTCCTCGCCGTTTCGCCTCTCCTA
TCATGACGTGTGCCACGGCAGCAGCAGCAGCAACGGCAAACGCAGCAGCA
GTGGGAGGCGTTGTTGCGCCTCCCCCCGACGGCATCAGTCACGCCTCAGC
CTCAGCCTCAGCCTCAGCAGCCGGCAGCGCCGTCCGTACCGGCTCCGGAA
GACATCCCTCCGCCGCCACCCCCGCGTCCACAGCGGCTGGAGCCGCCATC
GCAGCAGCAGCCGGCGCAGCCGCAGCCGGCGCCGCAAAACCCGTGGGTCC
AGCAGCATCAGCAGCACCTTCAGCTCCAGCTACAACAACACATGCTGTAC
CAGCAGACGCTGCAGCAGCAAGCACTACTCCAACAGCAACAGCAACAGCA
GCAACAGCAGTCAGCCGCCCCCGTTCCTGCTCCTGCTCCTGCTCCACGGG
AGGAGTTGCCGCCGCCGCCGCCGCCTCGCCCGCAGCACCAGCAATGGCAC
GCCGCTCAGCAAGCTGCGCAGCTCCAGGCGCATCACCAGGCCCTGCGCGC
CGCCACCTCCTCCTCCCCCGCCCCCGCCGCCGCATCCCCAGGTGGAGTAT
TGGGGCTCGGGGCTGCTGTCGCGGCTGCTACGGCCCCGGTTGCCGCTGCG
GTCGCTCCCGCTTCTGCGCCCGTCGCCTATCAGTACGCGGGGTACGGCCT
GCATCAGTCGGCAGCGATCGCGACGGCCAACGCAAACGCGGCCACGGCGG
CGGCGACTCTTGCGGCGTATCAGCAGCAGCAACCGGTGGCGGCTACGCCC
GCGGCGGCGCAAGCGGCGGCGGCAGCGAGCGCTGCGACGGCCGCGTTTCA
GCGGAATAGGTGGGTCCAGCAGCAGCTCTTGGCTCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAGGGTGACGGTGCGGCGAACGGGACCGGGCAAGGT
CCATATTCTCAGTACCGCGGTCCTTCGTGAAGCCGTATGGCTTGAAGGCG
TTCGCTGGTGCAGGAAACGAGATGCCCGCGATCTCGATGCGATAGATGGC
TTTGACCAGGGGGGGGGGCGTTGGCATGAAAAACAGATGTCGCTGCCCGC
TGGTCGGAAGACTTTTTTTTCCGCGCGTTGTGTGCGAGCGCTTGTTTTGT
TTTCACGCCACCTCCTTCCTCCCTTTAAGCGCTGCTATGGGGTGCAGCTT
GCCATGTCGAAGCCCGCAGCTTGTGCTCTTGACGCTTCTTGGGGAGGGGG
GGGGCTTGAAATAGATGCCGGTACGACAAACGGCGAAAATATTGGTTGTT
GGTAGATTTCGTAGATTTGCGCCATCGCTTGTTGGGAGAGCGGCGTATGC
ACCGAGGAAGAGGGCGCGCAAGTGCGATAAATGGCAGGGAACGTCGTTTT
GTTGGATCGTTTGGTCACCATTTTGTTCGATCTTATGTGCGTCTACGTTC
GTCTAATGCTGCGTTTGTGTTCATTACCTGCAGCTTGAAGCTTTCATTGG
ATTCGCTTGGGCTGCCCGAACGATTTGACAACGTTTCCAATTGTTGGTCT
GTGTGCCGCTGTATTTCGATGTTGGGTCGTCGGGGACTCCCTACACAAGT
TGGCCATGTCTGATCGCCACAGCGAGGGCTAACTAGCCTTCCTGCCGCCA
AGCAATAATGTAATCTGTATTTGGCGATCACCAATCATCTCCTAACTGAA
GGACGGAACACGCGTCCCTCGCTCCCGACGGTATGTATCGACTCTCATTG
GTGGGCTCAAGCTCTATTTCGTACATACCGTAGCGAAAAAGCATGGATTG
AGTCCACGTCGTGCGAGCGGTTTGCGTGCGTGTGTGTTGACGGCTGCGGC
ATGTCGTGGCCCCGCCATTTCCGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10230:2479..4952+

>mRNA_H-canaliculatus_F_contig10230.249.1 ID=mRNA_H-canaliculatus_F_contig10230.249.1|Name=mRNA_H-canaliculatus_F_contig10230.249.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1938bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10230:2479..4952+ (Hapterophycus canaliculatus Oshoro5f female)
CGATCGGTAGGACCGACTCTGCCGGCGCACGGACGGCAGCGGCGCCGGCC
GCGAGCCGGGCTGCCGAGTCTATCAGCCAGCGATCGGTAGGACCGACTCT
GCCGGCGCACGGACGGCAGCGGCGCCGGCCGCGAGCCGGGCTGCCGAGTC
TATCAGCCAGCAGCAGCAGCAACGGCAAACGCAGCAGCAGTGGGAGGCGT
TGTTGCGCCTCCCCCCGACGGCATCAGTCACGCCTCAGCCTCAGCCTCAG
CCTCAGCAGCCGGCAGCGCCGTCCGTACCGGCTCCGGAAGACATCCCTCC
GCCGCCACCCCCGCGTCCACAGCGGCTGGAGCCGCCATCGCAGCAGCAGC
CGGCGCAGCCGCAGCCGGCGCCGCAAAACCCGTGGGTCCAGCAGCATCAG
CAGCACCTTCAGCTCCAGCTACAACAACACATGCTGTACCAGCAGACGCT
GCAGCAGCAAGCACTACTCCAACAGCAACAGCAACAGCAGCAACAGCAGT
CAGCCGCCCCCGTTCCTGCTCCTGCTCCTGCTCCACGGGAGGAGTTGCCG
CCGCCGCCGCCGCCTCGCCCGCAGCACCAGCAATGGCACGCCGCTCAGCA
AGCTGCGCAGCTCCAGGCGCATCACCAGGCCCTGCGCGCCGCCACCTCCT
CCTCCCCCGCCCCCGCCGCCGCATCCCCAGGTGGAGTATTGGGGCTCGGG
GCTGCTGTCGCGGCTGCTACGGCCCCGGTTGCCGCTGCGGTCGCTCCCGC
TTCTGCGCCCGTCGCCTATCAGTACGCGGGGTACGGCCTGCATCAGTCGG
CAGCGATCGCGACGGCCAACGCAAACGCGGCCACGGCGGCGGCGACTCTT
GCGGCGTATCAGCAGCAGCAACCGGTGGCGGCTACGCCCGCGGCGGCGCA
AGCGGCGGCGGCAGCGAGCGCTGCGACGCAGCAGCAGCAACGGCAAACGC
AGCAGCAGTGGGAGGCGTTGTTGCGCCTCCCCCCGACGGCATCAGTCACG
CCTCAGCCTCAGCCTCAGCCTCAGCAGCCGGCAGCGCCGTCCGTACCGGC
TCCGGAAGACATCCCTCCGCCGCCACCCCCGCGTCCACAGCGGCTGGAGC
CGCCATCGCAGCAGCAGCCGGCGCAGCCGCAGCCGGCGCCGCAAAACCCG
TGGGTCCAGCAGCATCAGCAGCACCTTCAGCTCCAGCTACAACAACACAT
GCTGTACCAGCAGACGCTGCAGCAGCAAGCACTACTCCAACAGCAACAGC
AACAGCAGCAACAGCAGTCAGCCGCCCCCGTTCCTGCTCCTGCTCCTGCT
CCACGGGAGGAGTTGCCGCCGCCGCCGCCGCCTCGCCCGCAGCACCAGCA
ATGGCACGCCGCTCAGCAAGCTGCGCAGCTCCAGGCGCATCACCAGGCCC
TGCGCGCCGCCACCTCCTCCTCCCCCGCCCCCGCCGCCGCATCCCCAGGT
GGAGTATTGGGGCTCGGGGCTGCTGTCGCGGCTGCTACGGCCCCGGTTGC
CGCTGCGGTCGCTCCCGCTTCTGCGCCCGTCGCCTATCAGTACGCGGGGT
ACGGCCTGCATCAGTCGGCAGCGATCGCGACGGCCAACGCAAACGCGGCC
ACGGCGGCGGCGACTCTTGCGGCGTATCAGCAGCAGCAACCGGTGGCGGC
TACGCCCGCGGCGGCGCAAGCGGCGGCGGCAGCGAGCGCTGCGACGGTGG
GTCCAGCAGCAGCTCTTGGCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGGGTGACGGTGCGGCGAACGGGACCGGGCAAGGTCCATATTCTCAGT
ACCGCGGTCCTTCGTGAGTGGGTCCAGCAGCAGCTCTTGGCTCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACAGGGTGACGGTGCGGCGAACGGGACCG
GGCAAGGTCCATATTCTCAGTACCGCGGTCCTTCGTGA
back to top