mRNA_H-canaliculatus_F_contig1023.247.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1023.247.1
Unique NamemRNA_H-canaliculatus_F_contig1023.247.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 2.030e-124
Identity = 201/255 (78.82%), Postives = 220/255 (86.27%), Query Frame = 2 
Query:  122 KLEGLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGDMPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGGWAIAA 886
            KLEG VALVTGASGGIGK TA+AFA+EGAKVV+AARREDKL++V   I+AAGG+ AL VGD SKEADCK MVD A+EKFG LHVAFNNAG+F+A PFA+I+E  ID LLN+NVKSLA+CFKYQIPAM  +A GKGSIIV +SSTALR  A  GM  GGMYSASKAAAEMLMKYAAIEGA SGVRVNSV+PGHVETPIYG+MPRE LV VT  TQL+ RPIKPEEIA VVIFLASEDA MVTGSTY MDGGWAI A
Sbjct:    2 KLEGCVALVTGASGGIGKSTAIAFAKEGAKVVIAARREDKLKEVADEIKAAGGDVALAVGDASKEADCKKMVDTAIEKFGGLHVAFNNAGVFRAVPFADITEDTIDDLLNINVKSLAWCFKYQIPAMKNTAGGKGSIIVNTSSTALRTTALPGMAGGGMYSASKAAAEMLMKYAAIEGAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLASEDAAMVTGSTYTMDGGWAIKA 256
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 5.350e-111
Identity = 187/255 (73.33%), Postives = 207/255 (81.18%), Query Frame = 2 
Query:  122 KLEGLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGDMPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGGWAIAA 886
            KLEG VALVTGAS GIGK TA AFA+EGAKVV+AARRE KL +V A I++AGGE A+VVGDVSKE DCK MVD A+EKFG LHVAFNNAG+FK  PF +I+E  ID +LN NVKS+A+C KYQIPAM  +A GKGSIIV +S T LRP A  G+   GMYSASKAAAEMLMKYAAIEGA SGVRVNSVAPG VETPI+GDMP + LV     TQL+ RP  PEEIAKVVIFLASEDA MVTGSTY MDGGWA+ A
Sbjct:    4 KLEGCVALVTGASSGIGKATATAFAKEGAKVVIAARREVKLDEVAAEIKSAGGEVAVVVGDVSKEMDCKKMVDTAIEKFGGLHVAFNNAGVFKTVPFVDITEDTIDDILNTNVKSIAWCLKYQIPAMKDTAGGKGSIIVNTSVTGLRPSALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGGWAMKA 258
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BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA)

HSP 1 Score: 210 bits (535), Expect = 3.680e-60
Identity = 127/260 (48.85%), Postives = 169/260 (65.00%), Query Frame = 2 
Query:  110 MAPGKLEGLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGD-MPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGGWAIAA 886
            MA  + EG VA+VTGAS G+G  TA   A EGAKVV+ AR +DKL    A I+A GG+   V  DVSK+A  K +VD A+  +G+LH+AF NAG +  +P  +++E   D + +VNVKS+AF  K+ +PA+ KS  G GS+I+ SS  ALR  A      GG+YSASKAAA+M+MKYAAIE ++   RVNS+APG V+T I G+ M  E+         L+ R   PEEIA  V FLAS++A  +TGS + +DGGW + A
Sbjct:    1 MAAKRFEGRVAVVTGASSGMGLATAAQLAAEGAKVVMVARTKDKLEAAAADIKAKGGDVLAVAADVSKDAANKEIVDAALSAYGKLHIAFLNAGTYGGAPVDQVTEELFDKIFDVNVKSVAFGLKHVLPAIEKSGGG-GSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRVNSIAPGIVQTAIMGEGMTDESYNAFAAPVSLVGRVGTPEEIAPFVCFLASDEATFITGSVHEVDGGWGLKA 259
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BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA)

HSP 1 Score: 200 bits (508), Expect = 3.900e-56
Identity = 129/264 (48.86%), Postives = 168/264 (63.64%), Query Frame = 2 
Query:  122 KLEGLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDI-----DALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSS---STALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIY---GDMPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGGWAI 880
            + EG VA+VTGAS GIG  T     +EGAKVV+ +R +DKL   VA I+A  G+   +  DVSKEA  K MVD+A+ K+GRL VAF NAG F  +PFAE S G +     D +++ N KS+ F FKY +PA+ KS  G GSI+V SS   STA      AG+     Y+ASKAA +ML+KYAA+E A    RV SVAPG V TPI+   GDM    +  + +  QL++R  +PEE+A+ V FL S+DA  VTGS + +DGG +I
Sbjct:    5 RFEGKVAIVTGASTGIGLATTAQLVREGAKVVLVSRSQDKLDAAVAEIKAKDGQVTTLAADVSKEATNKAMVDLAMSKYGRLDVAFFNAGTFAGAPFAEASLGHVTNEMVDTVMDTNFKSVVFGFKYALPAIEKSG-GHGSIVVNSSAAGSTASAKSVCAGIAP---YAASKAAVDMLVKYAAVEAAPHNTRVTSVAPGTVLTPIFQLFGDMKDSEVTDMAKAIQLMQRAGRPEEVARFVCFLLSDDASFVTGSVHSVDGGASI 264
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BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 5.630e-56
Identity = 121/254 (47.64%), Postives = 169/254 (66.54%), Query Frame = 2 
Query:  119 GKLEGLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGDMPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGGWAI 880
            G+    VA+VTGAS GIG  TA   A EGAKVV+AAR ++KL   VA+I+AAGGEA  V  D S + D K +VD A+E +G ++V+F NAGI++ +  AE+++  +D L + NVK +A+  KYQ+ A+ KS  GKGS+++ SS       A    RS G Y+++KAAA++LMKYAAIE  + G RVNS+APG V T + GD P +A   + +   L+ R  +PEEIA+ V FLAS+DA  VTG+    DGG+++
Sbjct:    2 GRFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSG-GKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGL-GDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSL 253
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: D8LQS5_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS5_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 4.670e-55
Identity = 102/143 (71.33%), Postives = 118/143 (82.52%), Query Frame = 2 
Query:  332 MVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGDMPREALVGVTQVT 760
            MVD A++KFG LHVAFNNAG+++++PFA+I E  ID LLN+NVKSLA+CFKYQIPAM  SA GKGSIIV +SSTALRP A+ GM   GMY+ASKAAAE+LMKYAAIEGA SGVRVNSVA G V+TPI+GDMP E LV     T
Sbjct:    1 MVDTAIQKFGGLHVAFNNAGVYRSAPFADIMEDTIDDLLNINVKSLAWCFKYQIPAMKDSAGGKGSIIVNTSSTALRPSASPGMTGSGMYAASKAAAELLMKYAAIEGAASGVRVNSVARGLVKTPIFGDMPDETLVAFAGAT 143
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BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: A0A835YQ90_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ90_9STRA)

HSP 1 Score: 193 bits (491), Expect = 8.190e-54
Identity = 114/247 (46.15%), Postives = 160/247 (64.78%), Query Frame = 2 
Query:  131 GLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGDMPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGG 871
            G VA++TGAS GIG   A   A EGAKVV+AAR +D+L   V +I+AAGGEA  VV D S + D K +VD  +E +G L+++F NAG+  A P +E+    +D L +VNVK +A+  KYQ+PA+ KS  GKGS+++ SS       A    +  G Y+++KAA ++LMKYAAIE  + G RVNS+APG + T +  + P E    + ++  L+ R  +PEEIA+ V FLAS+DA  VTG+  + DGG
Sbjct:    5 GKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSG-GKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLV-EAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGG 249
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: A0A3D1P9S2_9CYAN (Short chain dehydrogenase n=1 Tax=Cyanobacteria bacterium UBA11049 TaxID=2055787 RepID=A0A3D1P9S2_9CYAN)

HSP 1 Score: 182 bits (462), Expect = 1.090e-49
Identity = 116/255 (45.49%), Postives = 161/255 (63.14%), Query Frame = 2 
Query:  110 MAPGKLEGLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGDMPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGGW 874
            M   KL+G VA+VTG S GIG+ TAV FA+EGAKVVVAARR  +  + V   + AGGEA  V  DV+KEAD + +V+  +E + RL  AFNNAG  KA+P  E+SE D D  L VN+K++  C KYQIPAM KS  G G+I+  +S  A+      G+ + G Y A+K     L + AAIE A+  +RVN V+PG ++T I  ++P + +  +     + +R  +PEEIA+ V++L S+ A  VTG   V+DGG+
Sbjct:    1 MMVSKLDGKVAIVTGGSSGIGRATAVGFAKEGAKVVVAARRTPEGEETVRQAKEAGGEALFVQTDVTKEADIEALVNKTLETYSRLDCAFNNAGSGKANPLTEMSESDWDFDLAVNLKAVWLCMKYQIPAMLKS--GAGAIVNMASQGAI-----IGVPNFGSYCAAKGGVISLSRTAAIEYAKDKIRVNIVSPGAIKTDILSEIPADQMQQIEAAIPI-ERAGQPEEIAEAVVWLCSDSASFVTGHNLVVDGGY 247
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: A0A835YUN2_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN2_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.490e-48
Identity = 111/256 (43.36%), Postives = 157/256 (61.33%), Query Frame = 2 
Query:  122 KLEGLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGD-MPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGGWAIAA 886
            + EG VALVTGAS G+G  TA   A EGA+VV+ AR +DKL    A I+AAGG        VS +A  + MV  A+  +G+LHVAF NAG +  +P  +++E   + + + NVKS+AF  K+ +PA+ +S  G GS++V SS   LR PA       G+Y+ SKAAA+M+M+YAAIE ++   RVNSVAPG V T + G+ M  +          L+ R     E++ +V FLAS++A  +TGS + +DGGW + A
Sbjct:    6 RFEGRVALVTGASSGMGLATARQLAAEGAQVVMVARTQDKLEAAAADIKAAGGXXXXXXXXVSTDAANEEMVKAALSTYGKLHVAFLNAGTYGGAPVDQVTEELFNKIFDANVKSVAFGLKHVLPAIERSGGG-GSVVVNSSCMGLRAPANPTFTGAGLYAGSKAAADMIMRYAAIEASKHKTRVNSVAPGIVRTELMGEGMTEQGYHDFAAPVSLVGRAGTSNEVSALVCFLASDEARFITGSVHEIDGGWRLKA 260
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Match: A0A835YKB8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB8_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.950e-48
Identity = 111/250 (44.40%), Postives = 159/250 (63.60%), Query Frame = 2 
Query:  131 GLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVAAIEAAGGEAALVVG---DVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASPFAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTALRPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETPIYGDMPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYVMDGG 871
            G VA++TGAS GIG   A   A EGAKVV+AAR +++L + V  I+A+    A+ +G   D S + D K +VD A+E +G L+V+F NAG+ +A P +E+    +D L +VNVK +A+  KYQ+PA+ KS  GKGS+++ SS       A    +  G Y+++KAA ++LMKYAAIE  + G RVNS+A G V T + G  P EA   + ++  L+ R  +PEEIA+ V FLAS++A  VTG+    DGG
Sbjct:    5 GKVAIITGASSGIGLAAAQQLAAEGAKVVLAARGKERLDEAVNNIKASRRMLAVAIGVVMDASVDEDNKRLVDTALETYGLLNVSFINAGVHRAKPISEVDASMLDTLYDVNVKGVAYALKYQLPAIEKSG-GKGSVVINSSCLGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAAGAVFTNLVG-APEEAFEEMGKMVGLMPRAGRPEEIARCVCFLASDEASFVTGTVLTADGG 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1023.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQS3_ECTSI2.030e-12478.82Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec... [more]
D8LQS1_ECTSI5.350e-11173.33Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
A0A835ZCI5_9STRA3.680e-6048.85Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835ZEC4_9STRA3.900e-5648.86Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YRJ1_9STRA5.630e-5647.64Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
D8LQS5_ECTSI4.670e-5571.33Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
A0A835YQ90_9STRA8.190e-5446.15Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A3D1P9S2_9CYAN1.090e-4945.49Short chain dehydrogenase n=1 Tax=Cyanobacteria ba... [more]
A0A835YUN2_9STRA1.490e-4843.36Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YKB8_9STRA1.950e-4844.40Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1023contigH-canaliculatus_F_contig1023:25251..31367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.4
Seed ortholog evalue1.3e-102
Seed eggNOG ortholog2880.D8LQS3
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1839
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1023.247.1prot_H-canaliculatus_F_contig1023.247.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1023 25360..30417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.6339743-UTR-H-canaliculatus_F_contig1023:25250..253591622928651.6339743-UTR-H-canaliculatus_F_contig1023:25250..25359Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1023 25251..25359 +
1696845514.4137397-UTR-H-canaliculatus_F_contig1023:25250..253591696845514.4137397-UTR-H-canaliculatus_F_contig1023:25250..25359Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1023 25251..25359 +
1622928651.7169304-UTR-H-canaliculatus_F_contig1023:30417..313671622928651.7169304-UTR-H-canaliculatus_F_contig1023:30417..31367Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1023 30418..31367 +
1696845514.4840295-UTR-H-canaliculatus_F_contig1023:30417..313671696845514.4840295-UTR-H-canaliculatus_F_contig1023:30417..31367Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1023 30418..31367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.6445944-CDS-H-canaliculatus_F_contig1023:25359..254611622928651.6445944-CDS-H-canaliculatus_F_contig1023:25359..25461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 25360..25461 +
1696845514.4241467-CDS-H-canaliculatus_F_contig1023:25359..254611696845514.4241467-CDS-H-canaliculatus_F_contig1023:25359..25461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 25360..25461 +
1622928651.6539016-CDS-H-canaliculatus_F_contig1023:27717..278191622928651.6539016-CDS-H-canaliculatus_F_contig1023:27717..27819Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 27718..27819 +
1696845514.4351084-CDS-H-canaliculatus_F_contig1023:27717..278191696845514.4351084-CDS-H-canaliculatus_F_contig1023:27717..27819Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 27718..27819 +
1622928651.6664064-CDS-H-canaliculatus_F_contig1023:28730..289071622928651.6664064-CDS-H-canaliculatus_F_contig1023:28730..28907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 28731..28907 +
1696845514.4429219-CDS-H-canaliculatus_F_contig1023:28730..289071696845514.4429219-CDS-H-canaliculatus_F_contig1023:28730..28907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 28731..28907 +
1622928651.678983-CDS-H-canaliculatus_F_contig1023:29416..295781622928651.678983-CDS-H-canaliculatus_F_contig1023:29416..29578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 29417..29578 +
1696845514.4505646-CDS-H-canaliculatus_F_contig1023:29416..295781696845514.4505646-CDS-H-canaliculatus_F_contig1023:29416..29578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 29417..29578 +
1622928651.6928184-CDS-H-canaliculatus_F_contig1023:29906..300471622928651.6928184-CDS-H-canaliculatus_F_contig1023:29906..30047Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 29907..30047 +
1696845514.4590254-CDS-H-canaliculatus_F_contig1023:29906..300471696845514.4590254-CDS-H-canaliculatus_F_contig1023:29906..30047Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 29907..30047 +
1622928651.7048323-CDS-H-canaliculatus_F_contig1023:30321..304171622928651.7048323-CDS-H-canaliculatus_F_contig1023:30321..30417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 30322..30417 +
1696845514.467063-CDS-H-canaliculatus_F_contig1023:30321..304171696845514.467063-CDS-H-canaliculatus_F_contig1023:30321..30417Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 30322..30417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1023.247.1

>prot_H-canaliculatus_F_contig1023.247.1 ID=prot_H-canaliculatus_F_contig1023.247.1|Name=mRNA_H-canaliculatus_F_contig1023.247.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=260bp
MAPGKLEGLVALVTGASGGIGKDTAVAFAQEGAKVVVAARREDKLRDVVA
AIEAAGGEAALVVGDVSKEADCKNMVDVAVEKFGRLHVAFNNAGIFKASP
FAEISEGDIDALLNVNVKSLAFCFKYQIPAMAKSAEGKGSIIVCSSSTAL
RPPAAAGMRSGGMYSASKAAAEMLMKYAAIEGAESGVRVNSVAPGHVETP
IYGDMPREALVGVTQVTQLLKRPIKPEEIAKVVIFLASEDAGMVTGSTYV
MDGGWAIAA*
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mRNA from alignment at H-canaliculatus_F_contig1023:25251..31367+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1023.247.1 ID=mRNA_H-canaliculatus_F_contig1023.247.1|Name=mRNA_H-canaliculatus_F_contig1023.247.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6117bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1023:25251..31367+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCCGTCTGCCCACGACCTGTTGCTGCACACTCCGCGCTGTCTCTTCAC
ACTTCACACAACTACCTGTGTCTTCTACAGCAGTTCCCGACAAACGCGTG
AAGAGAAATATGGCTCCTGGAAAGCTCGAAGGTTTGGTGGCGCTGGTGAC
GGGCGCATCCGGGGGCATCGGCAAGGACACAGCAGTCGCCTTTGCACAAG
AAGGAGCCAAGGTACGACTGTAGAAAGGATCGGTGATGAGCCGAGTGGAC
TCTGGTTGCTGCATCTAGAATAGGGAGGGTAGACGGTAGTTGCCGCAGTC
CGTCGTTTGCTTCGGTGCTTCTCGAGTCTACGTGTGTTGAGCTCAATGTT
GAGGAGGCTCTCTTGCGCGGACAACTGTAGTCTACACGGTCGTAGTCGAC
GGCTCTGCATGGTTTGCGCATGCGCGAAGCCCACGTTCAGCGGGGAGGGC
GAGCCCTGACACTCTCGTGCGTGGACCACCGGTTGCCCACAGTTGATGGT
TGAGTGTTGCGCGGACGGAGGCGAGATCGGTGATTTGATTACCCACGGAA
AGACGTGCTGATGACCTATGGCTCACGAGCCTCCCCTTTTTTTAGGGTCA
TCCTTCATGGTAGACCTTCAATTTCTGCGATCGCAGGAATCTACCCCTGA
TTTCCCTGTAAACGAAACAGGGCTCTCCTAAGGTCCAAACCCAGAAAAAC
CTCTGATGAGGGAATCATGTGAGGCCAAATGTGGGGTCGCTTCACAATTT
TACCGACTGCAGCACCTACACCGACCGCAGCGTACGACCGAAGTGCTCCA
AACAATCCTGAACTCACGGTCACTGCGCTTTTGCCATGCATAGGGTTACG
GCGATCGCCAGGCGAGAGTAAACTTGTGCTCGGCCTGCGGGTTGCCAGGG
CAAAACAGTATGTAGACCCGCTTCTCAGGGCACCGCGGTTCAAAAGACAA
CGCAGTCACTTTCGCTATGCCACGAATCAAGGCTAAACTTCCGTGGGCGT
CCTCTACCAACTAAACCCTCAACCCGTTTGGGGCTGGATTTGCGATAGGC
TCGGTTCTTCAGCAGCAAAAAAAGCCATCGCGGGGACCATGATCTCCTTT
TGGCGATGCTTTCGCTGCCTTTTTTTTCACTTCAAAATAGACTCTGTGCT
TTCAGTGTCAAAATGATTTTTCAGTGGCGGTCGTGTCCACTGCGATGTCT
TTCACTGCTGATGAACTGAGCCAACTTCCAGCCCAGCCCCAAATTCGATG
AGCCTATAGTGTGCCGAAGATGCCCTAGAAGATTTGGCCTTGATTCGTGT
CCCATCGAGCTAGAACGTGACTGCGTTGTCTTTCGGCCCCGACGATGCAG
CTCCTGTTCGAAACCCTCGGCAGGCTGAAACGCGGGTCTACATTTCGCTT
TGGGAATCCGGAGGCCAAATATGTGTCCTGTGCTTGCCTAGCCATCGCCC
GCCACTTATAAACGGCGAAGTTGTCACCACAGTGAACTCAGGATTGCGAG
GAGGGCTTCAGTCGCACGCTGCGGTCGGTGTCGGTGCCGCACTGATGTTT
TCGCCCACAATTGCAGAAATCGCGGGAAAAAAGGCGGTCGAAATCGCAGG
TTTCACAGGTTTCGCAGGTTTCCTTGGTAAAAAAGTCTCGTTAAAGATCG
GCCTTAGTGTTGTTGCCGGCGTGCATGACAGTTTTTGCTGTGAGCGATGG
AAATGGCGCTGGTTTATCAAGCGTTTACGCTAGGTGGCCCTGATCTTCGT
AGCTTCTGTCTTACGTTTTCGTGAGAATAAATGGACACCCCGGAAGGAAC
ACTCGCGGAGGCAGGATTTGGGTTTTTGTACAGTACGTGTTCACAACACG
CTTATCGCGAATAAAACTACCATAATTTGTCTTAAAAGGAGTGAAAATTC
GTGTCAGTGGAAGCTCGGACTGTCCGTAAGGAAGGACCTTGAGCTTTTTG
AGACGACGGGTGATCGAGATCGTTCGTGCGTCTTGGAGGCCACCTTTGCA
CGAAGGAGTTGATAATCCTTCGGGCCGGAAAAAATATTGACGCTCAAGAA
TGTCGGAGAGATATCATGCTGCTGCTGTGGTGGCTATCGGCTCTATAATG
TCTTGTCTTTTTCCTGTTTTGTCAAGGCATCAACTTGAGACCGGCCACCG
GATCATGATGAAGGCGACTTTCCGTTTCCTTGAAATGGTGGTCCGGCCGT
TCGAGCTGACTCGCGCACCTCTCGTTTCTGTCTTGAAGCGCTACACATAT
ATGAATGTGATGTCATTTACGACTTGGCTCTCACGAGAAAACAGAAACTC
ACCCCTTGGTATCCTCCCGGAAAGCGGCGAGCGAGTCGTTGCTCAAAGAC
CCACGACGATGAATGAGGTGCTACACAAGCTTCGTAGGCCGTTCTCGCTC
AAGGAAGGGCAGAAAAATGCCTCCTTTCGATTCACTCTGTGTCGCCTGCC
TCTTATCCCCGTGGTAGGTGGTGGTCGCCGCGAGACGAGAAGACAAGCTT
AGGGACGTGGTGGCCGCAATCGAGGCGGCCGGCGGAGAGGCGGCCTTGGT
CGTGGGAGATGTCTCCAAGGTGGGTGGGTGGTGCAGCGACTCCCCTCCGT
CTCTGGGCACAACATTACGACGTGAATCGGCATGGTAAAAATGTGACACG
ATTTACCGAATAGACCGCAATCGAGATAAGCACACCTAAGAAACTGAAGA
TTTTCCGATATATTTTTCATGCGTTGCCCCAGCTTTGCGGGTGAGCGCTG
TTCTTCATTTCGTCTTCTAAGACAAAAAATCGAAAACGAAATCAGGCATG
ATTGCAGCCCTCCCGCACCACTCATCATAATTTATTTTGCAAGTGTTTCT
ATTTCGTCTGCGAAAACAAAAAGGCTACTCAATAATTAGGCGCTTCCTCG
TGGAACCTGATATGCGTAGAAAACACGATTTATGATATCTTCATGTAGAG
TACTTGTATCTGTTACTCGGGAGTGTTAGTTTTCCATGTGAGGCAATCCA
ATCAAAGGAGTGTCGCAATAGACAAAGAGGAGGACCGCTCACCCACGCAA
GTGTTTACCACGATAACGCCTGGGCCCGCGGAGCCTTATTCTCTAGAAAC
ATAGTTACGACCAGATGGGGGGGAGGCCTGGCTGTTTTCCCCTTACCCGA
TGTTTGCTTGCTGTCGATGAAGAATTGGCGCAACAACGAGAAACTCGTAC
CAGTATGATAACCCAGACTGTTGCTCTTCCTAACGTCTGTCTTCTGAATA
AATGTTACGGACCTGACGCAGAAAAGTCGGAACACACGCAAGAAGGACAA
CCCAGGCCCCCGCCTATTCAACATGGCTCTACTGGTGGCCGCACCAAGAA
GAGAGGGTTGATGTGACTGCTGCGAATGAACTGCAATCTCATCGCATCGC
GTACTGGACGGACTCATAGTCGCTGGAAGTCGCAGTATCAAGCGTTCCAT
GCGAATACCCCCCCCCAACCCCTCTCGCAGGAAGCGGACTGCAAGAACAT
GGTCGATGTCGCCGTCGAGAAATTTGGCCGACTGCACGTGGCTTTCAACA
ACGCGGGTATTTTTAAGGCTAGCCCTTTCGCGGAAATTTCCGAGGGGGAC
ATCGACGCGCTCCTCAACGTGAACGTCAAGTCGCTCGCCTTCTGCTTCAA
GTACCAGGTAAAAACGATACCGGTAGATGTGTCTGAAGCGTGCGGTCGAT
GTTTGTGGAACGTGTTCATATGTGCACTCGACTCCGGATTGAAAACAGAA
ACATATATCCCCACCTTCGGCCATTTCGATGGTGCTACCCCTTTCCTTGG
AGCTCTGTAGATCAGAAGCCGAGCCGCATCGTTTTGGACCTTTTCAACAT
GCTGATGATGCCCATTTGAAACCCCATGCATTGATACGTCTCCAATCCAT
TTGGTGTCGGTCATTGACCCGCACAGACAATGGAAGCCCGTACCTCGGGT
AAACATCGATCTAGAGCGGCGACGAGATAAATATGAAGGAGCCCCGTGAC
ACGCGTCTTCCGCACATGATTCGCTGCCCCCTGGGCCCCCACACATGTCA
AGCGAGTAAGAAGGAAAAATGTAGCCATCACGCGAGAGGAGGGGGTCAAT
CTTGATGAGCCTGACCCTCTCTTCCTTCCTCCCCACCCCTCCTCCCTTTG
ATGTGCTTGTTGGCAGATCCCCGCGATGGCGAAAAGCGCGGAAGGGAAGG
GCTCCATCATTGTCTGCTCCTCTTCGACGGCGCTGCGCCCGCCGGCAGCG
GCCGGTATGAGGAGCGGAGGCATGTACTCGGCTTCGAAGGCGGCCGCGGA
AATGCTCATGAAGTACGCAGCCATCGAGGTTAGTTTTACTTACGCTGGCC
TCAAGAACCTCATTGATGCCCCTCCCTGCATTTCTTGTAAGGCCTTGGAA
TACGCTCAGCTGATGTTGTTCTGACATGATCCAGTTCCTTCCATCGGGAT
AAGTCTGTAGTATCGGACGCCTGGGAACAGCGAAAGCTCAAACAACCATT
TTGGACTTGAAGGGTACGCCGTCTGGGGGGTCCAATCTTGGCAGCCCAAA
TGACGCGCCACCCAAGTTTTTACGAAAGGATCCACCTTTTCTTGTCGGTA
TGATCATGAATCCAAATACGAGTAGACATTCCCATTCTGCCCCCTCTTCT
GGGCAGGGTGCCGAGTCGGGCGTGCGAGTAAACTCCGTCGCCCCCGGGCA
CGTGGAAACGCCAATCTACGGCGACATGCCACGTGAGGCGCTGGTTGGTG
TCACCCAAGTCACCCAGCTCCTGAAGAGGCCCATCAAACCTGAGGAGGTG
GGTGAAGGATAGTTCGGAGCCCATGGTGTGTCTTGCCATGGCCCATGTAG
CACACCGATGCGTGGCGCTCAAGCAGGCGGATATACTTTCGCAGGCTCTC
ATCACGTAGTGTGTGGTGGCGAACCGCTCCCCGAGAGCCTTTCGGAAAAG
AGAGATGGATGTAGTGCACCCGATGATGAAGCAGCTCTCACTACTATCGG
CAACAGGTACCCCGAAATGAACCAAGTCCTTTGCTTCCTCTGCTCTTTGT
TGATTTTGAATCTCCTCAAAGATTGCCAAGGTGGTCATCTTCTTGGCTTC
CGAGGACGCCGGAATGGTGACCGGCTCCACGTACGTCATGGACGGGGGCT
GGGCAATCGCTGCGTGATCGTCGTCTAGTCATAAACGACGGAAATACCTC
TGCATCGCTGTGTCGCCGTGAGATGCGACCCTCGGGGCCGGAGTCGCCGA
CGTGCACTTTTACTTGCTCGGCTCGACGTGCGGTCGCAAGGGAACCACGC
ATCCTCTTTTATACGTAGCCTTTGAATTTCGTGCGTCGAAGGCGACGATG
TCTGGGTGCGCTTGTGGCGCGGAACATCGAGGACGACGAAAACGCCGATC
GAGAGTGCCGATCGATAACGCCTCGAGTGAGGAAGGGCATGAAGGATAGG
TGTCAAATTTAGGCTTGATTTTTTGCCAAGAAAGCGGTTCTCGTGCCGAA
GCAGTACTTCTGCGTGCTTCAACACGTGGGTAGTTGAGTTCTTCGTTCTG
ACATAAGTCCAAGACGGTGTTCATTTGAGGAGCTACAGCTGGGCGTTGTA
GCTTGACTGCTGTCTGCGGCGGTGTGTGCATTGTCGGTTACTTCCAAAGA
AGGAAGACTGCCTTAGCAAACATTCTTTCATCAGTGGGAAACACGTAGTC
ACGGGAAACACCAACAGGGTACAGAGCAAGTTCCTCGTCGCCATACTCTT
ATCTCCAGCGCTTAGACTGGCTTGTTGTCAGGTGTAGTCAGTTTTTTCGT
TTCGCGCACTGTGAACGCCGGCTTTGTACCCTGCGCGTTTTTCGATCTGT
GCTTCAGCAATGCCTGTCCCGAAGGCCGTTCAAGTACGTCTTGAGTACAT
CGTACAAGCTTAGGGGTTGCAGCTAATGTGTGAAGCGAGGAGACATAATG
AAGACTTGCGTGTGTTTTCTGGTTGATGTCCTCGCTCGGACAGTGTTGTT
AGGATGTCCGGGTAGCGTGTACTCGGTTAGCACGCCTGCAGCACTTGCGG
AATATGTATATCTACGTGTCCATTGTCTTCGTGGTCTTCGTGGTCTTCGT
GGTTGCCCGATTCTTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1023:25251..31367+

>mRNA_H-canaliculatus_F_contig1023.247.1 ID=mRNA_H-canaliculatus_F_contig1023.247.1|Name=mRNA_H-canaliculatus_F_contig1023.247.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1560bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1023:25251..31367+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTCCTGGAAAGCTCGAAGGTTTGGTGGCGCTGGTGACGGGCGCATC
CGGGGGCATCGGCAAGGACACAGCAGTCGCCTTTGCACAAGAAGGAGCCA
AGATGGCTCCTGGAAAGCTCGAAGGTTTGGTGGCGCTGGTGACGGGCGCA
TCCGGGGGCATCGGCAAGGACACAGCAGTCGCCTTTGCACAAGAAGGAGC
CAAGGTGGTGGTCGCCGCGAGACGAGAAGACAAGCTTAGGGACGTGGTGG
CCGCAATCGAGGCGGCCGGCGGAGAGGCGGCCTTGGTCGTGGGAGATGTC
TCCAAGGTGGTGGTCGCCGCGAGACGAGAAGACAAGCTTAGGGACGTGGT
GGCCGCAATCGAGGCGGCCGGCGGAGAGGCGGCCTTGGTCGTGGGAGATG
TCTCCAAGGAAGCGGACTGCAAGAACATGGTCGATGTCGCCGTCGAGAAA
TTTGGCCGACTGCACGTGGCTTTCAACAACGCGGGTATTTTTAAGGCTAG
CCCTTTCGCGGAAATTTCCGAGGGGGACATCGACGCGCTCCTCAACGTGA
ACGTCAAGTCGCTCGCCTTCTGCTTCAAGTACCAGGAAGCGGACTGCAAG
AACATGGTCGATGTCGCCGTCGAGAAATTTGGCCGACTGCACGTGGCTTT
CAACAACGCGGGTATTTTTAAGGCTAGCCCTTTCGCGGAAATTTCCGAGG
GGGACATCGACGCGCTCCTCAACGTGAACGTCAAGTCGCTCGCCTTCTGC
TTCAAGTACCAGATCCCCGCGATGGCGAAAAGCGCGGAAGGGAAGGGCTC
CATCATTGTCTGCTCCTCTTCGACGGCGCTGCGCCCGCCGGCAGCGGCCG
GTATGAGGAGCGGAGGCATGTACTCGGCTTCGAAGGCGGCCGCGGAAATG
CTCATGAAGTACGCAGCCATCGAGATCCCCGCGATGGCGAAAAGCGCGGA
AGGGAAGGGCTCCATCATTGTCTGCTCCTCTTCGACGGCGCTGCGCCCGC
CGGCAGCGGCCGGTATGAGGAGCGGAGGCATGTACTCGGCTTCGAAGGCG
GCCGCGGAAATGCTCATGAAGTACGCAGCCATCGAGGGTGCCGAGTCGGG
CGTGCGAGTAAACTCCGTCGCCCCCGGGCACGTGGAAACGCCAATCTACG
GCGACATGCCACGTGAGGCGCTGGTTGGTGTCACCCAAGTCACCCAGCTC
CTGAAGAGGCCCATCAAACCTGAGGAGGGTGCCGAGTCGGGCGTGCGAGT
AAACTCCGTCGCCCCCGGGCACGTGGAAACGCCAATCTACGGCGACATGC
CACGTGAGGCGCTGGTTGGTGTCACCCAAGTCACCCAGCTCCTGAAGAGG
CCCATCAAACCTGAGGAGATTGCCAAGGTGGTCATCTTCTTGGCTTCCGA
GGACGCCGGAATGGTGACCGGCTCCACGTACGTCATGGACGGGGGCTGGG
CAATCGCTGCGTGAATTGCCAAGGTGGTCATCTTCTTGGCTTCCGAGGAC
GCCGGAATGGTGACCGGCTCCACGTACGTCATGGACGGGGGCTGGGCAAT
CGCTGCGTGA
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