mRNA_H-canaliculatus_F_contig1023.246.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1023.246.1
Unique NamemRNA_H-canaliculatus_F_contig1023.246.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1023.246.1 vs. uniprot
Match: D8LQU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU0_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.090e-46
Identity = 145/374 (38.77%), Postives = 190/374 (50.80%), Query Frame = 1 
Query:    1 FFDVQVFLAGLQTCLFSHTTRAPPAILLSVLDFEPLLFEIAPANFVKQRPRRTEGESR---SKEQEKDXXXXXXXXXXXXXXXXXXXXXXSAGVYQHGSYGALHSNHRSNISTKKNDHRVTRQAASYNNTWDAEAWDAKDQCCPSSFDVNKGKSCIFTADPVDLARALQRTSALTLFVVSKLSQRQVAIHGSGVVDISTFGPNLELSRCLPRAVSSWGHLTAKVGSKDPKGRMVATIDLAVSLSCLGATGYLIQPHP--TAPAWSQALTEDGTIAPPPHSPTAAVVGQSSPPTKTLRSARTRDGEESIKSEIQG-VRVGKPTGCAAV---HDVAPSAARCPHSGETRQTLSGLAPGGDS-----WTCVYDPRDG 1080
            FF ++V++A +++C F+HT+   P ++LS+LDFEPL+F+++     +++ R   G      S+ +EKD                      +   ++  S GA H +H  N    K     T + ASY       A +    C P  F  +KGKSCIFTA+P DL+RALQ  SALT  V SKLS RQ AIHGS  +D+STFGPN ELS  LPRAVS WGH T  V SKD KG  VA   L VSLSCLGATG LI   P  T  A  +A       A  P  P  +   +S+P    + S +       + ++ +G   V K  G   +   H  A SA      G+ R   SG   GG S     WTC Y+PRDG
Sbjct:   19 FFCLEVYVADVESCSFAHTS-VTPTVILSLLDFEPLVFDLSRTPPAQRQARGKRGPGLREVSQWEEKDDQHNGIGRVES-----------TNNTFRASSDGAQHDDHLFNNRKSKTTATTTVKHASY-------ADNENGPCHPKPFFCSKGKSCIFTANPADLSRALQTQSALTFLVASKLSLRQAAIHGSCAIDLSTFGPNAELSHSLPRAVSCWGHRTTCVESKDLKGATVARAGLTVSLSCLGATGSLIHLTPVRTGVASYRASGNGSPSAAAPPRPDHSTPDRSTPGGLPVVSDQWTTEGTQLDAQARGHAPVAKQPGTDHLMCRHAEAGSA----RYGDGRTKESGSGAGGTSAGAECWTCEYNPRDG 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1023.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQU0_ECTSI2.090e-4638.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1023contigH-canaliculatus_F_contig1023:11239..16752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_002270.1
Exons10
Model size3459
Cds size3459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1023.246.1prot_H-canaliculatus_F_contig1023.246.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1023 11239..16752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.4730742-CDS-H-canaliculatus_F_contig1023:11238..117871622928651.4730742-CDS-H-canaliculatus_F_contig1023:11238..11787Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 11239..11787 +
1696845514.318156-CDS-H-canaliculatus_F_contig1023:11238..117871696845514.318156-CDS-H-canaliculatus_F_contig1023:11238..11787Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 11239..11787 +
1622928651.483757-CDS-H-canaliculatus_F_contig1023:12485..125951622928651.483757-CDS-H-canaliculatus_F_contig1023:12485..12595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 12486..12595 +
1696845514.326696-CDS-H-canaliculatus_F_contig1023:12485..125951696845514.326696-CDS-H-canaliculatus_F_contig1023:12485..12595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 12486..12595 +
1622928651.4939504-CDS-H-canaliculatus_F_contig1023:12952..135841622928651.4939504-CDS-H-canaliculatus_F_contig1023:12952..13584Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 12953..13584 +
1696845514.3353066-CDS-H-canaliculatus_F_contig1023:12952..135841696845514.3353066-CDS-H-canaliculatus_F_contig1023:12952..13584Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 12953..13584 +
1622928651.5103517-CDS-H-canaliculatus_F_contig1023:13701..139471622928651.5103517-CDS-H-canaliculatus_F_contig1023:13701..13947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 13702..13947 +
1696845514.343476-CDS-H-canaliculatus_F_contig1023:13701..139471696845514.343476-CDS-H-canaliculatus_F_contig1023:13701..13947Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 13702..13947 +
1622928651.5273793-CDS-H-canaliculatus_F_contig1023:14185..149421622928651.5273793-CDS-H-canaliculatus_F_contig1023:14185..14942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 14186..14942 +
1696845514.3540103-CDS-H-canaliculatus_F_contig1023:14185..149421696845514.3540103-CDS-H-canaliculatus_F_contig1023:14185..14942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 14186..14942 +
1622928651.5409958-CDS-H-canaliculatus_F_contig1023:15083..152211622928651.5409958-CDS-H-canaliculatus_F_contig1023:15083..15221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 15084..15221 +
1696845514.362904-CDS-H-canaliculatus_F_contig1023:15083..152211696845514.362904-CDS-H-canaliculatus_F_contig1023:15083..15221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 15084..15221 +
1622928651.5562508-CDS-H-canaliculatus_F_contig1023:15325..155341622928651.5562508-CDS-H-canaliculatus_F_contig1023:15325..15534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 15326..15534 +
1696845514.3716722-CDS-H-canaliculatus_F_contig1023:15325..155341696845514.3716722-CDS-H-canaliculatus_F_contig1023:15325..15534Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 15326..15534 +
1622928651.5689628-CDS-H-canaliculatus_F_contig1023:15625..157911622928651.5689628-CDS-H-canaliculatus_F_contig1023:15625..15791Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 15626..15791 +
1696845514.3811393-CDS-H-canaliculatus_F_contig1023:15625..157911696845514.3811393-CDS-H-canaliculatus_F_contig1023:15625..15791Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 15626..15791 +
1622928651.5800571-CDS-H-canaliculatus_F_contig1023:15898..160671622928651.5800571-CDS-H-canaliculatus_F_contig1023:15898..16067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 15899..16067 +
1696845514.394449-CDS-H-canaliculatus_F_contig1023:15898..160671696845514.394449-CDS-H-canaliculatus_F_contig1023:15898..16067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 15899..16067 +
1622928651.5907402-CDS-H-canaliculatus_F_contig1023:16269..167521622928651.5907402-CDS-H-canaliculatus_F_contig1023:16269..16752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 16270..16752 +
1696845514.403899-CDS-H-canaliculatus_F_contig1023:16269..167521696845514.403899-CDS-H-canaliculatus_F_contig1023:16269..16752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1023 16270..16752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1023.246.1

>prot_H-canaliculatus_F_contig1023.246.1 ID=prot_H-canaliculatus_F_contig1023.246.1|Name=mRNA_H-canaliculatus_F_contig1023.246.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1153bp
FFDVQVFLAGLQTCLFSHTTRAPPAILLSVLDFEPLLFEIAPANFVKQRP
RRTEGESRSKEQEKDEEYEERDEGDDGEDSIGARNARSAGVYQHGSYGAL
HSNHRSNISTKKNDHRVTRQAASYNNTWDAEAWDAKDQCCPSSFDVNKGK
SCIFTADPVDLARALQRTSALTLFVVSKLSQRQVAIHGSGVVDISTFGPN
LELSRCLPRAVSSWGHLTAKVGSKDPKGRMVATIDLAVSLSCLGATGYLI
QPHPTAPAWSQALTEDGTIAPPPHSPTAAVVGQSSPPTKTLRSARTRDGE
ESIKSEIQGVRVGKPTGCAAVHDVAPSAARCPHSGETRQTLSGLAPGGDS
WTCVYDPRDGIIRDNVAIMATTTTSDTHVAIVPVADAGLVPSDCALSSCG
SRNEPLAVGDDGSGLVSGVPEAKTDQHGQTALSTETTPEQDRLISLPAGS
SEVDDEAGSGGPQCGDENTKAAEDEKHRNYGGSEAVEEVIGVREIIRVKA
MAGSGPASRRYPGNNHFAPSWTPPALSPKQGGGIEFGFQGRPVNGVSVPP
TGGAQPATREARHAENIDRRAGVPVRQRRPDGRRQRTSRRTIASEPGRPP
PATTAATRTTDRDQKKKERPGALTRKPWGAGPGNALDAGIRKAWVPHDAS
RPATKRLHEGRGDRSGGSRKGSYLQPEGFKHVSWPSASRSNRPAAALSPR
SESTRVRLTDLQQFLPTWTSLVAEAAWLRGSRTDATGDEVAGTGADGSAV
DVWSDTGQSSSAARSERGGLGCHGGGTSKETRQGQGLVPRPALDPSVERL
LMDWLSSRIDRRGKRLKTSDNAPVRRRCKSSAASVAVDFLACCCLSPGMS
LPSTVMHLLCSLSLRISTRRMLDLQQRRAFQSDYYMEFRDHLSMTLTFEI
RVASNEPTHTWILPRERNQHKVVRGCDAGGAIDHEMLYGLFQEALAHLVL
EKKAVPTPSGGNPESYAPDLSKTEEPGGVGWVEVLRRVSSKSERTLADAA
TANGQQPHSHHRDQAPPPLDISPGGGMYQHDDRFTGAPRIESSIGDDGSQ
LQTRMRRSSNSTCAAGEPLPSQSPTFVQPRRRLSPPPRLPPLSGRLPSPP
TPPRGQAITGSPPLSGQTAAAVTAAAAAAAEVEATTVAPGSSAAPASPRA
SR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1023:11239..16752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1023.246.1 ID=mRNA_H-canaliculatus_F_contig1023.246.1|Name=mRNA_H-canaliculatus_F_contig1023.246.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5514bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1023:11239..16752+ (Hapterophycus canaliculatus Oshoro5f female)
TTTTTTGACGTTCAGGTGTTCCTGGCTGGTCTCCAAACGTGCTTGTTCTC
GCACACGACAAGAGCCCCTCCAGCCATACTCCTGTCTGTCCTGGACTTCG
AGCCTCTATTGTTTGAGATCGCGCCGGCCAATTTTGTGAAACAAAGACCA
CGCAGAACGGAAGGGGAGAGTAGATCAAAGGAGCAGGAAAAGGACGAGGA
GTACGAGGAGAGAGACGAGGGGGACGACGGAGAGGACAGCATTGGAGCTC
GAAACGCCAGGAGCGCCGGCGTATACCAACACGGTTCTTACGGAGCTTTA
CATAGCAATCACCGCAGCAACATCAGCACGAAAAAAAACGACCATCGCGT
GACACGGCAAGCTGCAAGCTACAACAACACCTGGGATGCCGAGGCCTGGG
ATGCCAAGGATCAGTGTTGTCCCTCCTCCTTCGATGTTAACAAGGGAAAG
TCGTGCATCTTCACGGCGGATCCTGTCGATCTGGCCCGAGCTTTGCAGCG
AACAAGCGCGCTCACGTTGTTTGTGGTGTCGAAGCTTTCGCAGCGCCAGG
TATGTTAGTCTAATTCTGCGTCATTCGCGCGGGCAGATAGTAGGCGTTCC
GACGTGATTTTGTGCTATACTTGGTGCTTTTTTGTTGCCTTCCATTTTTC
TTCGGCAAACATTTACACCTTGTGAAGCACCAGGTCGGTGCATCAGCCGG
GATCAAATGCAATATTAGGAAGATTTAATTGGAGGTTCTGCTCGACCTTT
CTTCTGCGATGTACAACTCGCTTGTCTTTGCTAGAAGACCTTGGCCGCCC
CATACTCCCTCGTCAACCATAACGTCGAGTGTCGCGTGCGCATGGCAAAC
TCGTTCTCTACACCGCGTGTACGACGGGACAGCCATTCCAGATCGTCTGA
TCCCACCGGCATTTTAAGTCACGCCGCGTTCGTCGTAAGGTCCCTGAAGT
GAAGACTCAACCTTCGCAGCGGCCGGTGGCTGGAAGACAAACAAGGCTGA
TTGCGTTGCCGCTGAAGGTTTATTCCATTTCTTATTCTGCAAACGCTCCA
CCAAGCAACAGTCGTCGGAGCGGGTGCTCCTTCGCTTCACAGACGGGCTC
AGACACAACTCGTCGAGTTGCAGCCTACGCCGAACTGTCGGGGATGCGTC
CACTACACCCGACTACGATGATCTGTAAACATGCTTTCCCTGTCTGCATG
TTCTCGGCTAGGACTCAATCGCGTTTCACAACCTCCGATTTGCTCAGGTA
GCGATTCACGGCTCAGGTGTCGTCGACATATCTACCTTCGGCCCAAACCT
TGAGCTCTCTCGCTGTCTTCCCCGTGCCGTGTCATCGTGGGGTCACCTCA
CCGCGAAGTGAGACCACCCTGCCGTACAGCGTAAGCTCTTGATCGCAAAT
TACACATCAGATACTTAGCCTTCTCTACAACCCCTCTCTGCCGAGAGAAA
TCGTGCTGCTGATCAGCACGTCGGAAGGAACTCGAGCTACGTCTGAGAAC
ATAAGGGACCACCAACAAGGTTATCTACGTCGCCTGATCGGCGGGCCTTT
TTTATGCACCCCCAAACACAATTGCCCACAAACTGAGTTCCACAGGTGAT
GCCATCTTCTGCTATATTCTTCTTGTCGACGTTATCGCGAAGAAACATTA
CTTGCACGCGCGCGGGGGGGCGCTGCTCTCCTCCCTCGTCAACAACGCTG
TCGAACTTGATCAGGGTTGGATCCAAGGACCCGAAGGGCAGAATGGTAGC
GACGATCGACCTCGCCGTTTCGCTGTCTTGCTTGGGAGCAACAGGATATT
TGATTCAGCCTCATCCGACGGCCCCGGCCTGGTCTCAAGCCCTCACCGAG
GACGGCACCATCGCGCCCCCCCCACATTCTCCAACTGCGGCAGTAGTAGG
GCAATCGTCGCCGCCGACCAAAACTTTGCGATCAGCTCGGACTCGCGATG
GTGAGGAGTCGATAAAATCCGAGATACAGGGTGTTCGGGTCGGAAAGCCG
ACAGGATGTGCTGCCGTCCACGACGTCGCGCCGAGCGCTGCTCGTTGTCC
ACATAGCGGAGAAACTAGGCAGACATTGAGCGGCTTGGCGCCAGGCGGAG
ATTCTTGGACGTGTGTATACGACCCTCGAGATGGAATCATCAGGGACAAT
GTCGCAATCATGGCTACCACGACGACCAGCGACACACACGTAGCTATCGT
ACCCGTTGCTGACGCTGGCTTGGTGCCCAGTGACTGCGCTCTTTCTTCAT
GCGGCTCTCGGAACGAACCCCTAGCAGTGGGGGATGATGGGTCAGGCCTT
GTTTCTGGAGTTCCCGAAGCAAAAACCGACCAGCATGGGCAGACGGGTAT
CGCTGACACACCGGAGGATAGCGTGATCAGCACATCACCCAGAAAATCGG
AAGATGGGGTTACTACCTGTGGCGCTACCTCAACGAGGGCGGAACCTGCT
TCGCTTGTTACAGCATTGTCGACTGAAACCACGCCGGAGCAGGATCGATT
GATCTCACTCCCAGCGGGGAGCTCCGAAGTCGACGACGAGGCAGGCTCTG
GTGGGCCTCAGTGTGGTGATGAGAACACAAAGGCAGCCGAGGACGAGAAA
CATCGAAATTATGGTGGATCTGAAGCGGTGGAGGAGGTTATCGGGGTCAG
AGAGATTATTCGCGTGAAGGCGATGGCGGGGAGTGGTCCGGCCAGCCGGC
GTTACCCAGGTGCTTGCTCGGAAACGGGGGCACGAAGTGAAGCAAGCAGA
AAGACGTTGAGAGAGCTGCCAAAGAAGCACATCGTAGACCCTTTCTAATC
TTGAGGCTTCCCCTCGTCATCAGGTTGCTGATATATCAACCGTTCTAGCG
CTGTCGCCTGTCGTCCGTTCGTTCTTTCCCTAAACCCCTTTGCTCCCTCT
TGCACCGCCGAACAATCGTGGGCCTTCGTGTCCCTCGTGCCCTGCAGGCA
ACAATCACTTCGCCCCATCATGGACACCCCCAGCGCTCTCACCTAAGCAG
GGGGGAGGCATTGAATTTGGCTTCCAGGGCAGGCCAGTCAACGGTGTCTC
GGTACCACCCACCGGCGGGGCGCAGCCGGCGACGAGAGAAGCCAGGCACG
CCGAAAATATCGACCGAAGAGCGGGGGTCCCCGTTCGGCAGAGGCGACCC
GACGGCCGGCGGCAACGCACGAGCAGAAGAACCATCGCGAGCGAGCCAGG
GCGACCGCCGCCGGCGACAACAGCGGCTACCAGGACAACGGACAGAGACC
AAAAGAAGAAGGAGAGACCGGGAGCGCTGACCCGGAAGCCCTGGGGGGCC
GGGCCGGGCAACGCCCTTGATGCTGGCATACGCAAGGCCTGGGTGCCTCA
CGACGCTTCCCGACCGGCGACGAAACGCCTTCACGAAGGGCGGGGAGACC
GGAGCGGCGGGAGCAGGAAAGGGAGCTATTTGCAGCCCGAGGGATTCAAG
CACGTTTCCTGGCCAAGCGCGTCACGCTCCAACCGCCCGGCTGCTGCTCT
TTCACCACGGTCGGAAAGCACACGGGTGCGGCTTACGGATCTTCAGCAGT
TTTTACCCACGTGGACTTCTCTTGTGGCAGAAGCGGCGTGGCTCCGCGGT
TCTCGGACCGACGCGACCGGTGACGAGGTCGCCGGCACCGGCGCCGACGG
CAGCGCCGTTGACGTTTGGAGCGACACAGGGCAGAGTTCTTCGGCGGCCA
GATCGTTGGCTCCCGCACCCCCAGCCGCCGAACTCCATCGTAAGGTGCCT
GCCTCAGTCGGCGTTGAGAGCAGGAGTAGGACAGGACATTGCCGGGATGA
ACGTCCCGCCGCTACAGGCAGGACTGCCTTGTCTGGCACGGAAAGCGAAA
GGGGTGGGCTTGGCTGCCATGGCGGGGGCACGTCGAAGGAGACTCGGCAG
GGCCAGGGTCTCGTACCCCGGCCAGCGCTTGACCCAAGCGTAGAGAGGCT
CTTGATGGACTGGCTGAGCTCGAGAATCGACAGGTATGGTGCATGTCTTG
CATATGCAGAATAATTCACTGCGCTGCAAACGCAGTTTTTTCAATCTCTG
CGTACGCCCAGTGTGGGGTTATATTGCGGGTTTGGAGAAGGGGGAAAAGG
TTGAAGACTTCCGACAATGCTCCGGTTCGCCGAAGATGTAAGAGTTCCGC
CGCCAGCGTTGCTGTTGATTTTTTGGCTTGTTGTTGCTTGTCGCCCGGAA
TGTCTCTGCCAAGCACAGTTATGCACCTTCTCTGCTCTCTCTCACTCAGA
ATATCTACTCGAAGGATGCTTGATCTGCAGCAGCGGCGAGCTTTCCGTCG
TCGATAATACGACCGAACATCACTTTCTCACAAATGAAACCCTTCTCCAA
CGCCTCACCCATGGTAAATAGCAACGAATCGTGCAAGAATCGGACTATTA
CATGGAGTTCCGAGATCACCTGTCCATGACGCTCACCTTTGAGATTCGAG
TTGCCAGCAACGAACCGACACACACTTGGATATTACCACGTGAGCGCAAC
CAGCATAAAGTAGTACGCGGATGTGACGCCGGCGGGGCGATTGACCATGA
GATGTCTACGATCTACCCTGTGCCTCTCTTCATTCGGTCAGAAATGGGAG
AGTGCCCCTCGCCGGCGCCCCCGATCAGCTTCAAGAGAAGACATCGCCGT
GGGCCACCAGGCTCTACGGATTGTTCCAAGAAGCGTTGGCTCATCTCGTG
CTGGAGAAAAAAGCTGTACCAACACCAAGCGGCGGAAATCCGGAGAGCTA
CGCTCCGGACTTGAGCAAAACGGAAGAACCTGGTGGGGTGGGATGGGTGG
AGGTGTTACGCAGGGTTTCTTCGAAGTCGGTGAGCGGAGGTCTGAGCGGA
GCTGGCGTCAAACACTCAACACATATCCACAGGCTCGCCGCCTCTTTTCG
GAGTAGTCCGGTCTGGCGGGAAACGACTGGAGCCACATTATTCCCGTCCA
GCCATCGTTTCACTCCCCCCCCCCCCCCCCCCCCCCCCTCGCTCCCGTCG
CCGCGCAACACCCGTTCGAAACATTTATCAGGAACGAACCCTAGCAGATG
CCGCCACAGCTAACGGGCAACAACCCCATTCGCACCACCGCGACCAGGCG
CCACCTCCTCTTGATATCTCGCCGGGCGGCGGGATGTATCAGCACGACGA
CCGTTTCACGGGCGCTCCACGGATAGAGTCCTCCATTGGCGACGACGGGT
CACAGCTACAGACACGCATGAGACGCAGCAGCAACTCCACCTGCGCGGCC
GGCGAGCCGCTGCCGAGCCAATCGCCCACTTTCGTCCAGCCCCGACGCCG
ATTGTCCCCGCCCCCGAGACTCCCTCCGCTGAGCGGTCGATTGCCGTCAC
CACCGACACCACCACGAGGGCAAGCGATCACAGGGAGTCCGCCGTTATCA
GGGCAGACAGCGGCGGCGGTGACGGCAGCGGCGGCGGCAGCGGCAGAGGT
AGAAGCGACAACCGTGGCGCCTGGTTCTTCGGCAGCCCCAGCTTCCCCGA
GAGCTTCCCGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1023:11239..16752+

>mRNA_H-canaliculatus_F_contig1023.246.1 ID=mRNA_H-canaliculatus_F_contig1023.246.1|Name=mRNA_H-canaliculatus_F_contig1023.246.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1023:11239..16752+ (Hapterophycus canaliculatus Oshoro5f female)
TTTTTTGACGTTCAGGTGTTCCTGGCTGGTCTCCAAACGTGCTTGTTCTC
GCACACGACAAGAGCCCCTCCAGCCATACTCCTGTCTGTCCTGGACTTCG
AGCCTCTATTGTTTGAGATCGCGCCGGCCAATTTTGTGAAACAAAGACCA
CGCAGAACGGAAGGGGAGAGTAGATCAAAGGAGCAGGAAAAGGACGAGGA
GTACGAGGAGAGAGACGAGGGGGACGACGGAGAGGACAGCATTGGAGCTC
GAAACGCCAGGAGCGCCGGCGTATACCAACACGGTTCTTACGGAGCTTTA
CATAGCAATCACCGCAGCAACATCAGCACGAAAAAAAACGACCATCGCGT
GACACGGCAAGCTGCAAGCTACAACAACACCTGGGATGCCGAGGCCTGGG
ATGCCAAGGATCAGTGTTGTCCCTCCTCCTTCGATGTTAACAAGGGAAAG
TCGTGCATCTTCACGGCGGATCCTGTCGATCTGGCCCGAGCTTTGCAGCG
AACAAGCGCGCTCACGTTGTTTGTGGTGTCGAAGCTTTCGCAGCGCCAGT
TTTTTGACGTTCAGGTGTTCCTGGCTGGTCTCCAAACGTGCTTGTTCTCG
CACACGACAAGAGCCCCTCCAGCCATACTCCTGTCTGTCCTGGACTTCGA
GCCTCTATTGTTTGAGATCGCGCCGGCCAATTTTGTGAAACAAAGACCAC
GCAGAACGGAAGGGGAGAGTAGATCAAAGGAGCAGGAAAAGGACGAGGAG
TACGAGGAGAGAGACGAGGGGGACGACGGAGAGGACAGCATTGGAGCTCG
AAACGCCAGGAGCGCCGGCGTATACCAACACGGTTCTTACGGAGCTTTAC
ATAGCAATCACCGCAGCAACATCAGCACGAAAAAAAACGACCATCGCGTG
ACACGGCAAGCTGCAAGCTACAACAACACCTGGGATGCCGAGGCCTGGGA
TGCCAAGGATCAGTGTTGTCCCTCCTCCTTCGATGTTAACAAGGGAAAGT
CGTGCATCTTCACGGCGGATCCTGTCGATCTGGCCCGAGCTTTGCAGCGA
ACAAGCGCGCTCACGTTGTTTGTGGTGTCGAAGCTTTCGCAGCGCCAGGT
AGCGATTCACGGCTCAGGTGTCGTCGACATATCTACCTTCGGCCCAAACC
TTGAGCTCTCTCGCTGTCTTCCCCGTGCCGTGTCATCGTGGGGTCACCTC
ACCGCGAAGTAGCGATTCACGGCTCAGGTGTCGTCGACATATCTACCTTC
GGCCCAAACCTTGAGCTCTCTCGCTGTCTTCCCCGTGCCGTGTCATCGTG
GGGTCACCTCACCGCGAAGGTTGGATCCAAGGACCCGAAGGGCAGAATGG
TAGCGACGATCGACCTCGCCGTTTCGCTGTCTTGCTTGGGAGCAACAGGA
TATTTGATTCAGCCTCATCCGACGGCCCCGGCCTGGTCTCAAGCCCTCAC
CGAGGACGGCACCATCGCGCCCCCCCCACATTCTCCAACTGCGGCAGTAG
TAGGGCAATCGTCGCCGCCGACCAAAACTTTGCGATCAGCTCGGACTCGC
GATGGTGAGGAGTCGATAAAATCCGAGATACAGGGTGTTCGGGTCGGAAA
GCCGACAGGATGTGCTGCCGTCCACGACGTCGCGCCGAGCGCTGCTCGTT
GTCCACATAGCGGAGAAACTAGGCAGACATTGAGCGGCTTGGCGCCAGGC
GGAGATTCTTGGACGTGTGTATACGACCCTCGAGATGGAATCATCAGGGA
CAATGTCGCAATCATGGCTACCACGACGACCAGCGACACACACGTAGCTA
TCGTACCCGTTGCTGACGCTGGCTTGGTGCCCAGTGACTGCGCTCTTTCT
TCATGCGGCTCTCGGAACGAACCCCTAGCAGTGGGGGATGATGGGTCAGG
CCTTGTTTCTGGAGTTCCCGAAGCAAAAACCGACCAGCATGGGCAGACGG
GGTTGGATCCAAGGACCCGAAGGGCAGAATGGTAGCGACGATCGACCTCG
CCGTTTCGCTGTCTTGCTTGGGAGCAACAGGATATTTGATTCAGCCTCAT
CCGACGGCCCCGGCCTGGTCTCAAGCCCTCACCGAGGACGGCACCATCGC
GCCCCCCCCACATTCTCCAACTGCGGCAGTAGTAGGGCAATCGTCGCCGC
CGACCAAAACTTTGCGATCAGCTCGGACTCGCGATGGTGAGGAGTCGATA
AAATCCGAGATACAGGGTGTTCGGGTCGGAAAGCCGACAGGATGTGCTGC
CGTCCACGACGTCGCGCCGAGCGCTGCTCGTTGTCCACATAGCGGAGAAA
CTAGGCAGACATTGAGCGGCTTGGCGCCAGGCGGAGATTCTTGGACGTGT
GTATACGACCCTCGAGATGGAATCATCAGGGACAATGTCGCAATCATGGC
TACCACGACGACCAGCGACACACACGTAGCTATCGTACCCGTTGCTGACG
CTGGCTTGGTGCCCAGTGACTGCGCTCTTTCTTCATGCGGCTCTCGGAAC
GAACCCCTAGCAGTGGGGGATGATGGGTCAGGCCTTGTTTCTGGAGTTCC
CGAAGCAAAAACCGACCAGCATGGGCAGACGGCATTGTCGACTGAAACCA
CGCCGGAGCAGGATCGATTGATCTCACTCCCAGCGGGGAGCTCCGAAGTC
GACGACGAGGCAGGCTCTGGTGGGCCTCAGTGTGGTGATGAGAACACAAA
GGCAGCCGAGGACGAGAAACATCGAAATTATGGTGGATCTGAAGCGGTGG
AGGAGGTTATCGGGGTCAGAGAGATTATTCGCGTGAAGGCGATGGCGGGG
AGTGGTCCGGCCAGCCGGCGTTACCCAGCATTGTCGACTGAAACCACGCC
GGAGCAGGATCGATTGATCTCACTCCCAGCGGGGAGCTCCGAAGTCGACG
ACGAGGCAGGCTCTGGTGGGCCTCAGTGTGGTGATGAGAACACAAAGGCA
GCCGAGGACGAGAAACATCGAAATTATGGTGGATCTGAAGCGGTGGAGGA
GGTTATCGGGGTCAGAGAGATTATTCGCGTGAAGGCGATGGCGGGGAGTG
GTCCGGCCAGCCGGCGTTACCCAGGCAACAATCACTTCGCCCCATCATGG
ACACCCCCAGCGCTCTCACCTAAGCAGGGGGGAGGCATTGAATTTGGCTT
CCAGGGCAGGCCAGTCAACGGTGTCTCGGTACCACCCACCGGCGGGGCGC
AGCCGGCGACGAGAGAAGCCAGGCACGCCGAAAATATCGACCGAAGAGCG
GGGGTCCCCGTTCGGCAGAGGCGACCCGACGGCCGGCGGCAACGCACGAG
CAGAAGAACCATCGCGAGCGAGCCAGGGCGACCGCCGCCGGCGACAACAG
CGGCTACCAGGACAACGGACAGAGACCAAAAGAAGAAGGAGAGACCGGGA
GCGCTGACCCGGAAGCCCTGGGGGGCCGGGCCGGGCAACGCCCTTGATGC
TGGCATACGCAAGGCCTGGGTGCCTCACGACGCTTCCCGACCGGCGACGA
AACGCCTTCACGAAGGGCGGGGAGACCGGAGCGGCGGGAGCAGGAAAGGG
AGCTATTTGCAGCCCGAGGGATTCAAGCACGTTTCCTGGCCAAGCGCGTC
ACGCTCCAACCGCCCGGCTGCTGCTCTTTCACCACGGTCGGAAAGCACAC
GGGTGCGGCTTACGGATCTTCAGCAGTTTTTACCCACGTGGACTTCTCTT
GTGGCAGAAGCGGCGTGGCTCCGCGGTTCTCGGACCGACGCGACCGGTGA
CGAGGTCGCCGGCACCGGCGCCGACGGCAGCGCCGTTGACGTTTGGAGCG
ACACAGGGCAGAGTTCTTCGGCGGCCAGATCGCAACAATCACTTCGCCCC
ATCATGGACACCCCCAGCGCTCTCACCTAAGCAGGGGGGAGGCATTGAAT
TTGGCTTCCAGGGCAGGCCAGTCAACGGTGTCTCGGTACCACCCACCGGC
GGGGCGCAGCCGGCGACGAGAGAAGCCAGGCACGCCGAAAATATCGACCG
AAGAGCGGGGGTCCCCGTTCGGCAGAGGCGACCCGACGGCCGGCGGCAAC
GCACGAGCAGAAGAACCATCGCGAGCGAGCCAGGGCGACCGCCGCCGGCG
ACAACAGCGGCTACCAGGACAACGGACAGAGACCAAAAGAAGAAGGAGAG
ACCGGGAGCGCTGACCCGGAAGCCCTGGGGGGCCGGGCCGGGCAACGCCC
TTGATGCTGGCATACGCAAGGCCTGGGTGCCTCACGACGCTTCCCGACCG
GCGACGAAACGCCTTCACGAAGGGCGGGGAGACCGGAGCGGCGGGAGCAG
GAAAGGGAGCTATTTGCAGCCCGAGGGATTCAAGCACGTTTCCTGGCCAA
GCGCGTCACGCTCCAACCGCCCGGCTGCTGCTCTTTCACCACGGTCGGAA
AGCACACGGGTGCGGCTTACGGATCTTCAGCAGTTTTTACCCACGTGGAC
TTCTCTTGTGGCAGAAGCGGCGTGGCTCCGCGGTTCTCGGACCGACGCGA
CCGGTGACGAGGTCGCCGGCACCGGCGCCGACGGCAGCGCCGTTGACGTT
TGGAGCGACACAGGGCAGAGTTCTTCGGCGGCCAGATCCGAAAGGGGTGG
GCTTGGCTGCCATGGCGGGGGCACGTCGAAGGAGACTCGGCAGGGCCAGG
GTCTCGTACCCCGGCCAGCGCTTGACCCAAGCGTAGAGAGGCTCTTGATG
GACTGGCTGAGCTCGAGAATCGACAGCGAAAGGGGTGGGCTTGGCTGCCA
TGGCGGGGGCACGTCGAAGGAGACTCGGCAGGGCCAGGGTCTCGTACCCC
GGCCAGCGCTTGACCCAAGCGTAGAGAGGCTCTTGATGGACTGGCTGAGC
TCGAGAATCGACAGAAGGGGGAAAAGGTTGAAGACTTCCGACAATGCTCC
GGTTCGCCGAAGATGTAAGAGTTCCGCCGCCAGCGTTGCTGTTGATTTTT
TGGCTTGTTGTTGCTTGTCGCCCGGAATGTCTCTGCCAAGCACAGTTATG
CACCTTCTCTGCTCTCTCTCACTCAGAATATCTACTCGAAGGATGCTTGA
TCTGCAGCAGCGGCGAGCTTTCCAAGGGGGAAAAGGTTGAAGACTTCCGA
CAATGCTCCGGTTCGCCGAAGATGTAAGAGTTCCGCCGCCAGCGTTGCTG
TTGATTTTTTGGCTTGTTGTTGCTTGTCGCCCGGAATGTCTCTGCCAAGC
ACAGTTATGCACCTTCTCTGCTCTCTCTCACTCAGAATATCTACTCGAAG
GATGCTTGATCTGCAGCAGCGGCGAGCTTTCCAATCGGACTATTACATGG
AGTTCCGAGATCACCTGTCCATGACGCTCACCTTTGAGATTCGAGTTGCC
AGCAACGAACCGACACACACTTGGATATTACCACGTGAGCGCAACCAGCA
TAAAGTAGTACGCGGATGTGACGCCGGCGGGGCGATTGACCATGAGATAA
TCGGACTATTACATGGAGTTCCGAGATCACCTGTCCATGACGCTCACCTT
TGAGATTCGAGTTGCCAGCAACGAACCGACACACACTTGGATATTACCAC
GTGAGCGCAACCAGCATAAAGTAGTACGCGGATGTGACGCCGGCGGGGCG
ATTGACCATGAGATGCTCTACGGATTGTTCCAAGAAGCGTTGGCTCATCT
CGTGCTGGAGAAAAAAGCTGTACCAACACCAAGCGGCGGAAATCCGGAGA
GCTACGCTCCGGACTTGAGCAAAACGGAAGAACCTGGTGGGGTGGGATGG
GTGGAGGTGTTACGCAGGGTTTCTTCGAAGTCGGCTCTACGGATTGTTCC
AAGAAGCGTTGGCTCATCTCGTGCTGGAGAAAAAAGCTGTACCAACACCA
AGCGGCGGAAATCCGGAGAGCTACGCTCCGGACTTGAGCAAAACGGAAGA
ACCTGGTGGGGTGGGATGGGTGGAGGTGTTACGCAGGGTTTCTTCGAAGT
CGGAACGAACCCTAGCAGATGCCGCCACAGCTAACGGGCAACAACCCCAT
TCGCACCACCGCGACCAGGCGCCACCTCCTCTTGATATCTCGCCGGGCGG
CGGGATGTATCAGCACGACGACCGTTTCACGGGCGCTCCACGGATAGAGT
CCTCCATTGGCGACGACGGGTCACAGCTACAGACACGCATGAGACGCAGC
AGCAACTCCACCTGCGCGGCCGGCGAGCCGCTGCCGAGCCAATCGCCCAC
TTTCGTCCAGCCCCGACGCCGATTGTCCCCGCCCCCGAGACTCCCTCCGC
TGAGCGGTCGATTGCCGTCACCACCGACACCACCACGAGGGCAAGCGATC
ACAGGGAGTCCGCCGTTATCAGGGCAGACAGCGGCGGCGGTGACGGCAGC
GGCGGCGGCAGCGGCAGAGGTAGAAGCGACAACCGTGGCGCCTGGTTCTT
CGGCAGCCCCAGCTTCCCCGAGAGCTTCCCGGTGAGAACGAACCCTAGCA
GATGCCGCCACAGCTAACGGGCAACAACCCCATTCGCACCACCGCGACCA
GGCGCCACCTCCTCTTGATATCTCGCCGGGCGGCGGGATGTATCAGCACG
ACGACCGTTTCACGGGCGCTCCACGGATAGAGTCCTCCATTGGCGACGAC
GGGTCACAGCTACAGACACGCATGAGACGCAGCAGCAACTCCACCTGCGC
GGCCGGCGAGCCGCTGCCGAGCCAATCGCCCACTTTCGTCCAGCCCCGAC
GCCGATTGTCCCCGCCCCCGAGACTCCCTCCGCTGAGCGGTCGATTGCCG
TCACCACCGACACCACCACGAGGGCAAGCGATCACAGGGAGTCCGCCGTT
ATCAGGGCAGACAGCGGCGGCGGTGACGGCAGCGGCGGCGGCAGCGGCAG
AGGTAGAAGCGACAACCGTGGCGCCTGGTTCTTCGGCAGCCCCAGCTTCC
CCGAGAGCTTCCCGGTGA
back to top