mRNA_H-canaliculatus_F_contig10228.244.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10228.244.1
Unique NamemRNA_H-canaliculatus_F_contig10228.244.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10228.244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10228contigH-canaliculatus_F_contig10228:3631..4926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1296
Cds size1137
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10228.244.1prot_H-canaliculatus_F_contig10228.244.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10228 3684..4820 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.3750064-UTR-H-canaliculatus_F_contig10228:3630..36831622928651.3750064-UTR-H-canaliculatus_F_contig10228:3630..3683Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10228 3631..3683 +
1696845514.2780356-UTR-H-canaliculatus_F_contig10228:3630..36831696845514.2780356-UTR-H-canaliculatus_F_contig10228:3630..3683Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10228 3631..3683 +
1622928651.3956387-UTR-H-canaliculatus_F_contig10228:4820..49261622928651.3956387-UTR-H-canaliculatus_F_contig10228:4820..4926Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10228 4821..4926 +
1696845514.2964613-UTR-H-canaliculatus_F_contig10228:4820..49261696845514.2964613-UTR-H-canaliculatus_F_contig10228:4820..4926Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10228 4821..4926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.385346-CDS-H-canaliculatus_F_contig10228:3683..48201622928651.385346-CDS-H-canaliculatus_F_contig10228:3683..4820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10228 3684..4820 +
1696845514.287853-CDS-H-canaliculatus_F_contig10228:3683..48201696845514.287853-CDS-H-canaliculatus_F_contig10228:3683..4820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10228 3684..4820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10228.244.1

>prot_H-canaliculatus_F_contig10228.244.1 ID=prot_H-canaliculatus_F_contig10228.244.1|Name=mRNA_H-canaliculatus_F_contig10228.244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=379bp
MVVSATPISAASAAPAAATPVAAQGGSDPGFKTTREGSLGLARVDMAAVA
EAPAAAVAAAGWELPATEADGLIPGRAEAWDASMLGSVVDRANAATNEGD
ATGVRGGIPGSVRVEVVAGEAGGEEGKHETEREEGKIRPCGKLSPVVSVN
PTSTGAAAPEAATPVAVAAQGVRDAGFKTPGERPLEGAHVHTAIHGSVGA
NVERMQPAEASSRSHALTDGATPFMGRIQEKQQAFKPCLVVASDGDNGGG
DDGAAIAKPEDAMFSPAERKTLGPGGDTVGSSKSFAPVTASAAAPGTSST
EVGGHCRLESDAATGDATGCVGGNVVDRAGAAVQTAAVSRQRRRRQLLEH
LRLPLQRQGLSFHLSATVDSSLEESGQA*
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mRNA from alignment at H-canaliculatus_F_contig10228:3631..4926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10228.244.1 ID=mRNA_H-canaliculatus_F_contig10228.244.1|Name=mRNA_H-canaliculatus_F_contig10228.244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1296bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10228:3631..4926+ (Hapterophycus canaliculatus Oshoro5f female)
AGCAGAAGGAGGAGGATGAGAAGGGGGGACGCCCGTCCTACAACGATGCT
GCGATGGTGGTGTCCGCAACACCGATCTCGGCAGCATCAGCGGCACCTGC
GGCAGCAACACCGGTGGCAGCGCAGGGTGGAAGCGATCCGGGCTTCAAGA
CCACTCGCGAGGGCTCTCTTGGATTGGCGCGCGTTGACATGGCGGCGGTT
GCCGAAGCACCTGCGGCTGCCGTCGCCGCAGCAGGATGGGAACTCCCCGC
TACCGAGGCTGATGGCCTCATCCCCGGGCGAGCAGAAGCATGGGACGCCT
CTATGCTCGGATCCGTCGTTGATAGAGCAAACGCTGCTACGAACGAGGGT
GACGCTACCGGCGTTCGTGGTGGTATTCCGGGATCGGTGCGTGTGGAGGT
TGTGGCGGGAGAGGCTGGGGGAGAAGAGGGCAAGCACGAGACGGAGAGGG
AGGAGGGAAAGATCAGGCCATGCGGTAAACTTTCGCCGGTGGTGTCCGTG
AACCCGACCTCGACTGGAGCAGCCGCACCTGAAGCTGCAACCCCGGTGGC
AGTGGCAGCGCAGGGTGTAAGGGATGCGGGCTTCAAGACTCCTGGAGAAA
GGCCTCTCGAAGGGGCGCACGTTCACACGGCGATACACGGCAGCGTGGGA
GCCAACGTAGAGCGCATGCAACCGGCGGAAGCATCCAGCAGGAGTCACGC
CCTTACGGATGGTGCTACCCCGTTTATGGGACGTATTCAGGAGAAGCAGC
AGGCTTTCAAGCCTTGCCTGGTGGTGGCCAGCGACGGCGACAACGGCGGC
GGTGACGATGGGGCTGCGATTGCCAAGCCGGAGGACGCCATGTTTTCGCC
GGCGGAAAGGAAGACTTTGGGGCCTGGCGGAGACACCGTAGGTTCATCCA
AGTCGTTCGCGCCGGTGACAGCTTCGGCTGCTGCGCCTGGAACTTCCTCG
ACGGAGGTCGGAGGACACTGTCGCCTGGAATCGGATGCGGCTACCGGTGA
CGCGACGGGCTGTGTCGGGGGAAACGTCGTGGACAGGGCCGGCGCGGCCG
TGCAGACAGCGGCCGTATCGCGGCAACGACGCCGGCGACAGCTGCTGGAG
CACCTGCGGCTGCCGTTGCAGCGGCAGGGTCTGAGCTTCCATCTGTCAGC
AACGGTGGACTCGTCGCTGGAGGAGTCGGGCCAAGCGTGACGATTGTTGT
TGGGCCTGTCGTTGATGCAGCAGCAGCAGCACCAGCAACAGCAACAGCAA
CAGCAACAGCAGCAGCAGCGGCAGTAGCAACAGCAGCGGCAGCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10228:3631..4926+

>mRNA_H-canaliculatus_F_contig10228.244.1 ID=mRNA_H-canaliculatus_F_contig10228.244.1|Name=mRNA_H-canaliculatus_F_contig10228.244.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2274bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10228:3631..4926+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGGTGTCCGCAACACCGATCTCGGCAGCATCAGCGGCACCTGCGGC
AGCAACACCGGTGGCAGCGCAGGGTGGAAGCGATCCGGGCTTCAAGACCA
CTCGCGAGGGCTCTCTTGGATTGGCGCGCGTTGACATGGCGGCGGTTGCC
GAAGCACCTGCGGCTGCCGTCGCCGCAGCAGGATGGGAACTCCCCGCTAC
CGAGGCTGATGGCCTCATCCCCGGGCGAGCAGAAGCATGGGACGCCTCTA
TGCTCGGATCCGTCGTTGATAGAGCAAACGCTGCTACGAACGAGGGTGAC
GCTACCGGCGTTCGTGGTGGTATTCCGGGATCGGTGCGTGTGGAGGTTGT
GGCGGGAGAGGCTGGGGGAGAAGAGGGCAAGCACGAGACGGAGAGGGAGG
AGGGAAAGATCAGGCCATGCGGTAAACTTTCGCCGGTGGTGTCCGTGAAC
CCGACCTCGACTGGAGCAGCCGCACCTGAAGCTGCAACCCCGGTGGCAGT
GGCAGCGCAGGGTGTAAGGGATGCGGGCTTCAAGACTCCTGGAGAAAGGC
CTCTCGAAGGGGCGCACGTTCACACGGCGATACACGGCAGCGTGGGAGCC
AACGTAGAGCGCATGCAACCGGCGGAAGCATCCAGCAGGAGTCACGCCCT
TACGGATGGTGCTACCCCGTTTATGGGACGTATTCAGGAGAAGCAGCAGG
CTTTCAAGCCTTGCCTGGTGGTGGCCAGCGACGGCGACAACGGCGGCGGT
GACGATGGGGCTGCGATTGCCAAGCCGGAGGACGCCATGTTTTCGCCGGC
GGAAAGGAAGACTTTGGGGCCTGGCGGAGACACCGTAGGTTCATCCAAGT
CGTTCGCGCCGGTGACAGCTTCGGCTGCTGCGCCTGGAACTTCCTCGACG
GAGGTCGGAGGACACTGTCGCCTGGAATCGGATGCGGCTACCGGTGACGC
GACGGGCTGTGTCGGGGGAAACGTCGTGGACAGGGCCGGCGCGGCCGTGC
AGACAGCGGCCGTATCGCGGCAACGACGCCGGCGACAGCTGCTGGAGCAC
CTGCGGCTGCCGTTGCAGCGGCAGGGTCTGAGCTTCCATCTGTCAGCAAC
GGTGGACTCGTCGCTGGAGGAGTCGGGCCAAGCGTGAATGGTGGTGTCCG
CAACACCGATCTCGGCAGCATCAGCGGCACCTGCGGCAGCAACACCGGTG
GCAGCGCAGGGTGGAAGCGATCCGGGCTTCAAGACCACTCGCGAGGGCTC
TCTTGGATTGGCGCGCGTTGACATGGCGGCGGTTGCCGAAGCACCTGCGG
CTGCCGTCGCCGCAGCAGGATGGGAACTCCCCGCTACCGAGGCTGATGGC
CTCATCCCCGGGCGAGCAGAAGCATGGGACGCCTCTATGCTCGGATCCGT
CGTTGATAGAGCAAACGCTGCTACGAACGAGGGTGACGCTACCGGCGTTC
GTGGTGGTATTCCGGGATCGGTGCGTGTGGAGGTTGTGGCGGGAGAGGCT
GGGGGAGAAGAGGGCAAGCACGAGACGGAGAGGGAGGAGGGAAAGATCAG
GCCATGCGGTAAACTTTCGCCGGTGGTGTCCGTGAACCCGACCTCGACTG
GAGCAGCCGCACCTGAAGCTGCAACCCCGGTGGCAGTGGCAGCGCAGGGT
GTAAGGGATGCGGGCTTCAAGACTCCTGGAGAAAGGCCTCTCGAAGGGGC
GCACGTTCACACGGCGATACACGGCAGCGTGGGAGCCAACGTAGAGCGCA
TGCAACCGGCGGAAGCATCCAGCAGGAGTCACGCCCTTACGGATGGTGCT
ACCCCGTTTATGGGACGTATTCAGGAGAAGCAGCAGGCTTTCAAGCCTTG
CCTGGTGGTGGCCAGCGACGGCGACAACGGCGGCGGTGACGATGGGGCTG
CGATTGCCAAGCCGGAGGACGCCATGTTTTCGCCGGCGGAAAGGAAGACT
TTGGGGCCTGGCGGAGACACCGTAGGTTCATCCAAGTCGTTCGCGCCGGT
GACAGCTTCGGCTGCTGCGCCTGGAACTTCCTCGACGGAGGTCGGAGGAC
ACTGTCGCCTGGAATCGGATGCGGCTACCGGTGACGCGACGGGCTGTGTC
GGGGGAAACGTCGTGGACAGGGCCGGCGCGGCCGTGCAGACAGCGGCCGT
ATCGCGGCAACGACGCCGGCGACAGCTGCTGGAGCACCTGCGGCTGCCGT
TGCAGCGGCAGGGTCTGAGCTTCCATCTGTCAGCAACGGTGGACTCGTCG
CTGGAGGAGTCGGGCCAAGCGTGA
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