mRNA_H-canaliculatus_F_contig10228.243.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10228.243.1
Unique NamemRNA_H-canaliculatus_F_contig10228.243.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10228.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10228contigH-canaliculatus_F_contig10228:1719..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1164
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10228.243.1prot_H-canaliculatus_F_contig10228.243.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10228 1748..2413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.31866-UTR-H-canaliculatus_F_contig10228:1718..17471622928651.31866-UTR-H-canaliculatus_F_contig10228:1718..1747Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10228 1719..1747 +
1696845514.2479153-UTR-H-canaliculatus_F_contig10228:1718..17471696845514.2479153-UTR-H-canaliculatus_F_contig10228:1718..1747Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10228 1719..1747 +
1622928651.3390048-UTR-H-canaliculatus_F_contig10228:2413..28821622928651.3390048-UTR-H-canaliculatus_F_contig10228:2413..2882Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10228 2414..2882 +
1696845514.2670949-UTR-H-canaliculatus_F_contig10228:2413..28821696845514.2670949-UTR-H-canaliculatus_F_contig10228:2413..2882Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10228 2414..2882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928651.3290415-CDS-H-canaliculatus_F_contig10228:1747..24131622928651.3290415-CDS-H-canaliculatus_F_contig10228:1747..2413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10228 1748..2413 +
1696845514.256819-CDS-H-canaliculatus_F_contig10228:1747..24131696845514.256819-CDS-H-canaliculatus_F_contig10228:1747..2413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10228 1748..2413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10228.243.1

>prot_H-canaliculatus_F_contig10228.243.1 ID=prot_H-canaliculatus_F_contig10228.243.1|Name=mRNA_H-canaliculatus_F_contig10228.243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=222bp
MIVEAESKASAAASTSPWATVAPAPARKNPTETGFINGPAAAATVAGLRH
GSAPPPPAVVVMAMEEDVEEDKTEDTVRSVAPTVAATTRSRTNGQIGGST
FPVSVEGASVTAMAAAQRGFPGASSDGGLVGGLGWRDASVVRPPVGVVAV
AASQGVGTDGRGGISLLTPAMGQAGGEEAKEDGDHAMNTYDEPSAVASVT
TKSAAAAAAGSYGSNVGGSGG*
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mRNA from alignment at H-canaliculatus_F_contig10228:1719..2882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10228.243.1 ID=mRNA_H-canaliculatus_F_contig10228.243.1|Name=mRNA_H-canaliculatus_F_contig10228.243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10228:1719..2882+ (Hapterophycus canaliculatus Oshoro5f female)
CATACGTGAGGCCGACTCCCGGAGCGCCGATGATTGTTGAGGCAGAGAGC
AAAGCATCGGCGGCGGCATCTACGTCCCCGTGGGCCACAGTAGCTCCCGC
ACCCGCGAGGAAAAATCCGACGGAAACTGGCTTCATCAACGGGCCAGCGG
CAGCCGCAACAGTGGCGGGGCTTCGACATGGATCGGCTCCGCCCCCTCCT
GCCGTGGTCGTCATGGCGATGGAGGAGGACGTAGAGGAAGACAAAACGGA
GGACACTGTACGCTCGGTCGCACCCACGGTGGCGGCGACCACAAGGTCCA
GGACGAACGGACAGATCGGCGGTTCAACGTTCCCGGTGTCGGTTGAAGGA
GCCTCCGTGACCGCCATGGCCGCCGCACAGCGTGGATTTCCCGGTGCCAG
CAGCGATGGGGGCCTCGTCGGGGGACTCGGGTGGCGCGATGCCTCCGTGG
TCAGACCTCCCGTTGGTGTAGTAGCCGTCGCCGCCAGCCAGGGTGTTGGC
ACGGACGGCCGTGGCGGCATTTCCTTGTTGACGCCAGCGATGGGGCAAGC
AGGAGGAGAGGAGGCGAAGGAGGATGGAGATCACGCGATGAACACTTACG
ACGAACCTTCGGCGGTGGCGTCGGTGACAACAAAATCGGCGGCAGCGGCG
GCAGCCGGCAGCTACGGCAGCAACGTCGGTGGAAGCGGGGGGTGACGTAA
AGGCCCCACCTGGGAAATGTGTCTCTGGAGTGCCGCGGGTCGAAACGACG
GCATCCGGGGTCGTGACGGTGCGCACGGCGATCGAGCAAGGGCCCGAAAC
TAGCGGTACCGCTCGTGCTCGCAAGGATGACGCAAAATGTCTGATCAGTT
CCCTCCAACACGTCCAGCAGGAGCAAAGGCCTTGCCCAGCTGTGGTTGGC
GGCGAGGCTTGGGGTGACGGCGGGGGCGATACCGGTTGTGTGACTGCCAG
GTCGGATAGCGCCACCTTTTCGCCGACGGAGACGGAGAGAAATGACGCTT
CACCGTTTTCTTCGGGTGCTGCTGGTGTCGACACAGCGAACGGTGGCCAA
CAACGCCGTTCTCTCGTCCCTGTGGAGGCGGACGAGGGGATCGAGGCTTT
GATCCAGGCGTTCGAGGGCGCGTGCGTCTCGCTGCCGGGAGAATCTACCA
CGGTCACCCCCTCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10228:1719..2882+

>mRNA_H-canaliculatus_F_contig10228.243.1 ID=mRNA_H-canaliculatus_F_contig10228.243.1|Name=mRNA_H-canaliculatus_F_contig10228.243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1332bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10228:1719..2882+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTGTTGAGGCAGAGAGCAAAGCATCGGCGGCGGCATCTACGTCCCC
GTGGGCCACAGTAGCTCCCGCACCCGCGAGGAAAAATCCGACGGAAACTG
GCTTCATCAACGGGCCAGCGGCAGCCGCAACAGTGGCGGGGCTTCGACAT
GGATCGGCTCCGCCCCCTCCTGCCGTGGTCGTCATGGCGATGGAGGAGGA
CGTAGAGGAAGACAAAACGGAGGACACTGTACGCTCGGTCGCACCCACGG
TGGCGGCGACCACAAGGTCCAGGACGAACGGACAGATCGGCGGTTCAACG
TTCCCGGTGTCGGTTGAAGGAGCCTCCGTGACCGCCATGGCCGCCGCACA
GCGTGGATTTCCCGGTGCCAGCAGCGATGGGGGCCTCGTCGGGGGACTCG
GGTGGCGCGATGCCTCCGTGGTCAGACCTCCCGTTGGTGTAGTAGCCGTC
GCCGCCAGCCAGGGTGTTGGCACGGACGGCCGTGGCGGCATTTCCTTGTT
GACGCCAGCGATGGGGCAAGCAGGAGGAGAGGAGGCGAAGGAGGATGGAG
ATCACGCGATGAACACTTACGACGAACCTTCGGCGGTGGCGTCGGTGACA
ACAAAATCGGCGGCAGCGGCGGCAGCCGGCAGCTACGGCAGCAACGTCGG
TGGAAGCGGGGGGTGAATGATTGTTGAGGCAGAGAGCAAAGCATCGGCGG
CGGCATCTACGTCCCCGTGGGCCACAGTAGCTCCCGCACCCGCGAGGAAA
AATCCGACGGAAACTGGCTTCATCAACGGGCCAGCGGCAGCCGCAACAGT
GGCGGGGCTTCGACATGGATCGGCTCCGCCCCCTCCTGCCGTGGTCGTCA
TGGCGATGGAGGAGGACGTAGAGGAAGACAAAACGGAGGACACTGTACGC
TCGGTCGCACCCACGGTGGCGGCGACCACAAGGTCCAGGACGAACGGACA
GATCGGCGGTTCAACGTTCCCGGTGTCGGTTGAAGGAGCCTCCGTGACCG
CCATGGCCGCCGCACAGCGTGGATTTCCCGGTGCCAGCAGCGATGGGGGC
CTCGTCGGGGGACTCGGGTGGCGCGATGCCTCCGTGGTCAGACCTCCCGT
TGGTGTAGTAGCCGTCGCCGCCAGCCAGGGTGTTGGCACGGACGGCCGTG
GCGGCATTTCCTTGTTGACGCCAGCGATGGGGCAAGCAGGAGGAGAGGAG
GCGAAGGAGGATGGAGATCACGCGATGAACACTTACGACGAACCTTCGGC
GGTGGCGTCGGTGACAACAAAATCGGCGGCAGCGGCGGCAGCCGGCAGCT
ACGGCAGCAACGTCGGTGGAAGCGGGGGGTGA
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