|
Homology
BLAST of mRNA_H-canaliculatus_F_contig10226.242.1 vs. uniprot
Match: D7FUK9_ECTSI (Sterol or diacylglycerol O-acyltransferase, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK9_ECTSI) HSP 1 Score: 205 bits (521), Expect = 8.880e-53 Identity = 110/218 (50.46%), Postives = 131/218 (60.09%), Query Frame = 3
Query: 2037 GCWWLVFDEPREFMRMWSTPVHRWLSAYVHLPTMELARSWASNGRSNDTQSTSPEEANAEPTARGS-TMTTWLPAVVATCVVSGVYHEAVVYVAMRGTCWPFNTFLLCVAGVLIITWDAVFPVRSNPDANPGPGTTSRVSAASVVAGQDKKGEKQNVDGXXXXXXXXXXXXXXNVKMVRVYGERGMLSVVIFNVLVQLSAFIADGAAWLWWRHLHVKS 2687
GCWWL+FDEPR+F+RMWSTPVHRWLS VH P +EL S + G S E + A G + TW+PAV+AT VVSGV+HEAVVY+AMRGTCWPFNTFLLCV GVL+I WD VFP+ PD P + + +G K+VR YG RG +S F V VQLSAFIAD AAWLWWRH+H+K+
Sbjct: 341 GCWWLLFDEPRDFLRMWSTPVHRWLSTCVHWPMLELC-STSDEGVDGTKSPPSAELSTATAEVAGDPSKWTWVPAVLATFVVSGVFHEAVVYIAMRGTCWPFNTFLLCVGGVLVIFWDIVFPL---PDLKPSSESEGGSPPQTATLSPRNEG-------------------GAGKKVVRAYGHRGRMSAAAFCVSVQLSAFIADCAAWLWWRHIHMKN 535
BLAST of mRNA_H-canaliculatus_F_contig10226.242.1 vs. uniprot
Match: D7FQV8_ECTSI (Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV8_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 2.220e-17 Identity = 69/185 (37.30%), Postives = 93/185 (50.27%), Query Frame = 3
Query: 2001 PNQNTHITWCATGCWWLVFDEPREFMRMWSTPVHRWLSAYVHLPTMELAR------------------------SWASNG----RSNDTQSTSPEEANAEPTARGSTMTTWLPAVVATCVVSGVYHEAVVYVAMRGTCWPFNTFLLCVAGVLIITWDAVFPVRSNPDANPGPGTTSRVSAASVVA 2471
P++NT+ G WWLV D+ R++ R+WS PVHRWLS V P +E+ + S SNG R T ST+ +A A G WL +VV + +VSGV HEAV +VAMR T WPF+TF L V + WD +FPV ++ + PG T R + S+ A
Sbjct: 435 PDRNTY------GPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRHRRRRVAREEDKPPATNGNSGGSNGVHDYRPKGTSSTTGGKARHGADA-GIVTRWWLASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVVADT-STPGTRPTGRRAFTSIAA 611
BLAST of mRNA_H-canaliculatus_F_contig10226.242.1 vs. uniprot
Match: A0A6H5J9L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L7_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 3.260e-10 Identity = 57/186 (30.65%), Postives = 83/186 (44.62%), Query Frame = 3
Query: 2037 GCWWLVFDEPREFMRMWSTPVHRWLSAYVHLPTM-----ELARSWASNGRSN----DTQSTSPEEANAEPTARGSTMT------------------------TW--LPAVVATCVVSGVYHEAVVYVAMRGTCWPFNTFLLCVAGVLIITWDAVFPVRSNPDANPGPGTTSRVSAASVVAGQDKKG 2489
G WWL+ +EP R+WSTPVHRW+S+ ++ P + + + S+G T PEE TW L A+ + + S + HEAV +VAMR TCWP +TF L ++ +I WDA++PVRS S +A S +G+D+ G
Sbjct: 477 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCSSGGVRRGLAGTSCREPEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRWTWRRLMALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRS---------IISESAAVSAASGEDRGG 653
BLAST of mRNA_H-canaliculatus_F_contig10226.242.1 vs. uniprot
Match: D7FQW2_ECTSI (Sterol or diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW2_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 4.250e-10 Identity = 56/175 (32.00%), Postives = 81/175 (46.29%), Query Frame = 3
Query: 2037 GCWWLVFDEPREFMRMWSTPVHRWLSAYVHLPTM-ELARSWASNGRSND--------TQSTSPEEANAEPTARG--------------STMTTW----LPAVVATCVVSGVYHEAVVYVAMRGTCWPFNTFLLCVAGVLIITWDAVFPVRSNPDANPGPGTTSRVSAASVVAGQD 2480
G WWL+ +EP R+WSTPVHRW+S+ ++ P + +++ GRS T EE T W L A+ + + S + HEAV +VAMR TCWP +TF L ++ +I WDA++PVRS S +A S +G+D
Sbjct: 478 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPVVGHKNAAFSQPGRSGGGVRRGLAGTLCRKSEEXXXXXXXXXXXXXXXXXXXXXXXQTQRRWTWRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRS---------IISESAAVSGASGED 643
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Ec32 ortholog description | Sterol or diacylglycerol O-acyltransferase, partial |
Ec32 ortholog | Ec-02_002850.1 |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 3861 |
Cds size | 699 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928651.2428997-UTR-H-canaliculatus_F_contig10226:1177..2348 | 1622928651.2428997-UTR-H-canaliculatus_F_contig10226:1177..2348 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10226 1178..2348 - |
1696845514.201816-UTR-H-canaliculatus_F_contig10226:1177..2348 | 1696845514.201816-UTR-H-canaliculatus_F_contig10226:1177..2348 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10226 1178..2348 - |
1622928651.2702615-UTR-H-canaliculatus_F_contig10226:3047..4689 | 1622928651.2702615-UTR-H-canaliculatus_F_contig10226:3047..4689 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10226 3048..4689 - |
1696845514.230001-UTR-H-canaliculatus_F_contig10226:3047..4689 | 1696845514.230001-UTR-H-canaliculatus_F_contig10226:3047..4689 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10226 3048..4689 - |
1622928651.2820067-UTR-H-canaliculatus_F_contig10226:4708..5057 | 1622928651.2820067-UTR-H-canaliculatus_F_contig10226:4708..5057 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10226 4709..5057 - |
1696845514.2389338-UTR-H-canaliculatus_F_contig10226:4708..5057 | 1696845514.2389338-UTR-H-canaliculatus_F_contig10226:4708..5057 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10226 4709..5057 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928651.2606025-CDS-H-canaliculatus_F_contig10226:2348..3047 | 1622928651.2606025-CDS-H-canaliculatus_F_contig10226:2348..3047 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10226 2349..3047 - |
1696845514.216624-CDS-H-canaliculatus_F_contig10226:2348..3047 | 1696845514.216624-CDS-H-canaliculatus_F_contig10226:2348..3047 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10226 2349..3047 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10226.242.1 >prot_H-canaliculatus_F_contig10226.242.1 ID=prot_H-canaliculatus_F_contig10226.242.1|Name=mRNA_H-canaliculatus_F_contig10226.242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=233bp
MVPPNQNTHITWCATGCWWLVFDEPREFMRMWSTPVHRWLSAYVHLPTME LARSWASNGRSNDTQSTSPEEANAEPTARGSTMTTWLPAVVATCVVSGVY HEAVVYVAMRGTCWPFNTFLLCVAGVLIITWDAVFPVRSNPDANPGPGTT SRVSAASVVAGQDKKGEKQNVDGGGNTTGSDAGGGGGNVKMVRVYGERGM LSVVIFNVLVQLSAFIADGAAWLWWRHLHVKS* back to topmRNA from alignment at H-canaliculatus_F_contig10226:1178..5057- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10226.242.1 ID=mRNA_H-canaliculatus_F_contig10226.242.1|Name=mRNA_H-canaliculatus_F_contig10226.242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3880bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10226:1178..5057- (Hapterophycus canaliculatus Oshoro5f female) CGCAAGAGACAAGCAGGGAGAGAGACAACAGGCAGACAGATGGTTAGGCG
AGGCGCATGGTGGGGGAAAAAAAGGGGTAGGAGTAACATTTACGCTGTCT
TTTCGAAGACAACGTGCGACGTTCGGTTCCCACCGCCCGGGCGTGGTTTG
TTCTATTCCGGCAGTTCCCGATGTTACAGGTGGCGGAGCGTCACTACACT
GTTCACGTGCGCCATTGCGATAAATGTTGAGCATGTTTCGCAAAACTCAG
TGCTGTTCGTATGAAGCCTGGAAACGTGAGAGGCGGGGGAGAAAATCATT
GTTTTCCGCTGGGCACTCCACGCGACCCTGCAAGTGTGAGATTTCCAGGG
CTTAACAGGCACCTGTAGAACAAAATGGGGCCGTTTCGGTCGCCGCAGAC
GTAATTGGTTTCGGTTCCCGTTGTGACGGAAACGTGATCCCGAGGTCATT
TCCTCATCTGCTGTTGGTATGGGCGAATGACGGGTCTACGTGAGTGCAAT
GTGAGATGGGAATGTGACGGAACATCTCCACACGCGTTCAATGTGCGACG
GGAACGAGAATTCGCAAACTCGAAGTGAGATAGAAATGGGAAGTCCTGGA
ATTGATACGTGACGCGATGGGAATTCGAAAGATCGATGTGGGGTGGGAAG
TGGAGCTTGTGGAGTCGACTTTCTGTTTTTGTTGTAAACTCTACGACCTA
TTTCCAGATGCCGGATGATTGCTTGCCTCTGCCGACTCCAACCACACCCG
CGGCCACATTTTCGTCGCCTGCTGGTAGGGTTCTAACCTCCGCAAATGGT
TGGTCATGAGCACAGCCGTCGCCTTCTTTGTCGCGGTCCGCCGTATGGGT
ACGGGGGTACGCGCGAGAGAGTGTTTTGCGTGGTCTGCGGCACGCCGTGC
CGTCTCCCGTCTGCAGACGTCACGCGTGACGTAGTTGATGTTTTTGTTAT
GGTGAACCAACCACCATGAGTGTCGCCGGTGCAGATGGTGTCTTAGCTGA
CGGCAGAACAGTGTGGGACAACGAGCAGTATAATGTGTGTTGAACGTGGG
AGGGTAAATGGGAAAAGGTGTTCCACCACGATGGGCGTCGGAACAGATTT
GGTGGGCGGGATCGTGATAGTGGGAACGGGGATATAGAATCCGACACCTA
GGTGGGAGTTAGGATGGCAATGCTGGAATCCATGGTCAGGACAGGAACGG
GTTAATGATCAGGGATTGCGGGGATGGGATGGGGAGAAGCTACACATTAT
GTAATGGGAAGCAAGTGGGACGGTAAGGGTGTAAATCTGATGGGATGGGA
GCATGGGTTCGAAAAACATTGTGTACGGGACGGGAGATTTCTTCTACATA
GGCATCTCATGGTGGTTTAACGTCCAATTCTCATCTCATTCCATTCCTCA
TGAGTTTTCCGGTCCCATTAGTGTAGTTTCAAAGCTCTGGCGATTCTTGG
GCCTTGATCTGTCAAGGTGAGAAACGGGGTGAAGCGGACTGGATAGAGTT
GGGAGCAGGGAGTAATCTGCCGTCCCTCGGATTCCTCGTTTGACAAATTG
CCACGTTTTCCTCCCAAGAGGAAAATCTTTCGTTTGCTGTTCTGGCACGT
AACACCGTTCACCCACATCTTGGCGCGTCTACCGCGTGTCATCCGTCAAA
TCTGTGCACGAGTGACCTCGCCAACCCTCGAGACACAGCCAACCAAACAA
TTCCAACATTTCCACCGCCTGGTCCCCACACTGCTGTACGAGAAAGATTC
GCCTTCGTTCTTCACCGCAGCGTCCACCCTTAACTCCATCTCGCCCTCAT
CCTGTCTATTGCACAGCTGATAGATGCACATACTTGTGGTCGGATGCGAC
TTAATGTATTTCTAGGTGTGGATGTGCGAGGGTCTGCCGTCTGCCGAAGA
CTGTCGCAGAGAAAAGGCTGAGAACGAAACCTCGCCATCAGATTTATTGA
CTCTCTCTCCCGCCCCCGCCCCTCATCCCACGCAGCTCACCCCAAACCCC
CAACCCGTCGATGGTTCCACCAAACCAAAACACTCATATCACATGGTGCG
CGACAGGGTGCTGGTGGTTGGTTTTCGACGAGCCTCGGGAGTTCATGAGA
ATGTGGTCCACTCCCGTGCACCGCTGGCTCTCCGCGTATGTGCACCTGCC
CACGATGGAGCTGGCCCGGAGCTGGGCCAGCAACGGTCGGAGCAACGACA
CCCAATCGACCTCTCCTGAGGAGGCGAACGCAGAGCCGACCGCGAGAGGA
TCAACGATGACGACGTGGCTCCCAGCCGTCGTCGCCACCTGCGTGGTGTC
CGGGGTGTATCACGAGGCGGTGGTGTACGTGGCCATGCGGGGTACCTGCT
GGCCCTTCAACACGTTCCTGCTCTGCGTTGCCGGAGTGCTCATCATCACC
TGGGACGCCGTTTTCCCCGTCAGGAGCAACCCGGACGCGAACCCCGGGCC
TGGGACGACTTCCAGAGTCTCAGCTGCTTCGGTTGTCGCGGGGCAAGACA
AGAAGGGCGAAAAGCAAAACGTGGATGGTGGCGGCAACACCACGGGTTCT
GATGCGGGAGGTGGCGGGGGTAACGTCAAGATGGTGAGGGTGTACGGGGA
AAGGGGCATGCTGTCCGTTGTGATCTTCAACGTGCTGGTCCAGCTGTCGG
CTTTCATCGCGGACGGCGCAGCTTGGTTGTGGTGGCGACATCTCCATGTG
AAAAGCTGAGTCCTCGGCTGTTTGCTCCTTGCTTTGTGATCGAAAGGGTG
CCTTGGTCACCGTTCAGAATCAGTGCGAAGAAGTTTATCCTCCCTGCGTT
TCGGAGAGGTTGATTCACCTGTGGGCGTCGGGTGCACAGGACACTCCTCC
CGATGAAGCGAACGAACCCTTGACACTCCTATCTTGTACATGGTGCACAA
ATCAGATGTTGTGGAGTTTGAGTTTGAGTCTGATGTTGAGCTTGCTGGTG
CCGTATGCCTTTGGTTGGACATTACGTCCGCGTCAAGACACGGATCTGTT
GTCCTTGTCGTAGCCCTCTGCCGGCTTCACTATCTGTGTGTGAAGGCATA
GTGGTTTTGCTGCTGTTGACATTGGCAACCGCGCACCGGTTGACCAAATG
AAGTTCAACTAGGACGGGAGTGTGAAGGAGGGGAAAGTTTCGGTTGTGCG
CATGTATTTTCAGCAGCGGAGACCGCGTGAGCGAATTAGGCGGCAAATCG
GCGGACTTGCGGATTTCTGGGGGGGGGGTGGCGGAGTGGGTGGGGATGCG
AAGGAGGAAACCCATGCTAGATCGCATCTCATAGGTGCGTTGAGAGAGGG
CCGTGCCTAATGGTGTAGGCGACGCGGCACAATTTGTCGCAGCACATCCG
AAACTGACGAGGCGGAGGGTCGTAGACGACATGCGACGCCATGCGAAGAC
AACGCCACTGGAGCGTTTTGAAACGCCTGACACACCCGCGAGATGTGGCA
CACTGGATCGGGATGGGTGCGAAAAGCAAGCTTGTCTGGGTGTCGCCCTG
TGACCCTTAATCCGCGAAGAGCGGATTGTCGTTCTTCATGCCCTTGTTTC
GTTCTGAGCCGCTAGAGGGCGGTCTAATCTCGTAGACAGTGTGGTCTACC
AAGCTGTTTTTGAAGCGTTGCCGTGTGTTTGTTTCTGGAGGCGTTTAGTA
GGGTAGCGGTGTCAGGTATCGGCGCTGTCCCGCCTACTACCCCCCAGCGC
CTCTGCGCACACCCCGCTCTTTGCGCCCCTCATAAAGATTCCTTGACGGG
TGTTGGCGGTAGAGAGCATGTGCCACGCGCCGAGTTTGACGCTCCTGGCG
CAGTAACATCGAGAGGCAAAGAAAAAATAACCGTTTCGCCATGAAATGAG
TCCCATTTGCGGGCGCCCGAACTACTCGAC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10226:1178..5057- >mRNA_H-canaliculatus_F_contig10226.242.1 ID=mRNA_H-canaliculatus_F_contig10226.242.1|Name=mRNA_H-canaliculatus_F_contig10226.242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1398bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10226:1178..5057- (Hapterophycus canaliculatus Oshoro5f female) ATGGTTCCACCAAACCAAAACACTCATATCACATGGTGCGCGACAGGGTG CTGGTGGTTGGTTTTCGACGAGCCTCGGGAGTTCATGAGAATGTGGTCCA CTCCCGTGCACCGCTGGCTCTCCGCGTATGTGCACCTGCCCACGATGGAG CTGGCCCGGAGCTGGGCCAGCAACGGTCGGAGCAACGACACCCAATCGAC CTCTCCTGAGGAGGCGAACGCAGAGCCGACCGCGAGAGGATCAACGATGA CGACGTGGCTCCCAGCCGTCGTCGCCACCTGCGTGGTGTCCGGGGTGTAT CACGAGGCGGTGGTGTACGTGGCCATGCGGGGTACCTGCTGGCCCTTCAA CACGTTCCTGCTCTGCGTTGCCGGAGTGCTCATCATCACCTGGGACGCCG TTTTCCCCGTCAGGAGCAACCCGGACGCGAACCCCGGGCCTGGGACGACT TCCAGAGTCTCAGCTGCTTCGGTTGTCGCGGGGCAAGACAAGAAGGGCGA AAAGCAAAACGTGGATGGTGGCGGCAACACCACGGGTTCTGATGCGGGAG GTGGCGGGGGTAACGTCAAGATGGTGAGGGTGTACGGGGAAAGGGGCATG CTGTCCGTTGTGATCTTCAACGTGCTGGTCCAGCTGTCGGCTTTCATCGC GGACGGCGCAGCTTGGTTGTGGTGGCGACATCTCCATGTGAAAAGCTGAA TGGTTCCACCAAACCAAAACACTCATATCACATGGTGCGCGACAGGGTGC TGGTGGTTGGTTTTCGACGAGCCTCGGGAGTTCATGAGAATGTGGTCCAC TCCCGTGCACCGCTGGCTCTCCGCGTATGTGCACCTGCCCACGATGGAGC TGGCCCGGAGCTGGGCCAGCAACGGTCGGAGCAACGACACCCAATCGACC TCTCCTGAGGAGGCGAACGCAGAGCCGACCGCGAGAGGATCAACGATGAC GACGTGGCTCCCAGCCGTCGTCGCCACCTGCGTGGTGTCCGGGGTGTATC ACGAGGCGGTGGTGTACGTGGCCATGCGGGGTACCTGCTGGCCCTTCAAC ACGTTCCTGCTCTGCGTTGCCGGAGTGCTCATCATCACCTGGGACGCCGT TTTCCCCGTCAGGAGCAACCCGGACGCGAACCCCGGGCCTGGGACGACTT CCAGAGTCTCAGCTGCTTCGGTTGTCGCGGGGCAAGACAAGAAGGGCGAA AAGCAAAACGTGGATGGTGGCGGCAACACCACGGGTTCTGATGCGGGAGG TGGCGGGGGTAACGTCAAGATGGTGAGGGTGTACGGGGAAAGGGGCATGC TGTCCGTTGTGATCTTCAACGTGCTGGTCCAGCTGTCGGCTTTCATCGCG GACGGCGCAGCTTGGTTGTGGTGGCGACATCTCCATGTGAAAAGCTGA back to top
|