mRNA_H-canaliculatus_F_contig10217.234.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.960e-34 Identity = 69/121 (57.02%), Postives = 91/121 (75.21%), Query Frame = 1 Query: 16 IACYAEMAHEMNDFVDIFNG--VYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKEGARRRCLF 372
IACYAEMA ++NDFVDI NG Y RD ++V+K+IDI+KSCITSKDSP LDRLL IL WF+TW ++L LF + +D F+ ++W D+RL ILGFV+++R+V GD+ V EG+R R F
Sbjct: 470 IACYAEMARQVNDFVDIMNGKCAYNRDPIDVSKRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDLFLPDQTWDDLRLTILGFVAMTRYVFGDDDWVTEGSRGRYKF 590
BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE) HSP 1 Score: 105 bits (263), Expect = 4.740e-21 Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 1 Query: 7 NPEIACYAEMAHEMNDFVDIFNGVYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKEG 351
N EIACYAE+A MNDF+DI NGVYG + VE + + +K IT DSP L RLL IL +F++W+ LE G + + FIT SW DMR ILGFV++ R+V DE LV G
Sbjct: 452 NGEIACYAELAEVMNDFLDIMNGVYGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAHF-GPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDEDLVSGG 565
BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 8.230e-20 Identity = 81/261 (31.03%), Postives = 106/261 (40.61%), Query Frame = 1 Query: 7 NPEIACYAEMAHEMNDFVDIFNGVYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELEL--FSDGEST---FEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKEGARRRCLFHEIGAR*VCLPHGVQPGMRTRRGKDHDCTNYDVLRSRA*CCLDAEMYN*LQVPSITDLRRPRLIPHYRLVVFLRQDICKHRLGHIRAGQGTHKSPKKEEAYGAGLRADQIRNAQQSRRRSSDRSDVSPRLDLGG 774
N CY +A +MNDFVDIFNG YGR V+ CI S +S +DRLL IL +F+ W+ LE GE ++ FIT +SWFD+RL+ILGFVS+ R++ D Q+ S++ R L P QDIC+HR HIRA GTH++P EA D R RRR++ R+ P GG
Sbjct: 43 NGAAECYQTLARQMNDFVDIFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPER------------------------------------------------------------FQIDSLSPNCRRFLSPRN-----CSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRN---PNARSGG 235
BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 7.080e-16 Identity = 58/150 (38.67%), Postives = 87/150 (58.00%), Query Frame = 1 Query: 13 EIACYAEMAHEMNDFVDIFNGVYG---RDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKE--GARRRCLFHEIGAR*VCLPHG---VQPGMRTRR 438
E+ACYA++A MNDF+DI NGV+ +D +K ++ IT D P L RLL +L +F++W+ L G+ + FIT SW DMR ILGFV++SR++ D LV+E G RR L+ + ++ + L H ++ GM T +
Sbjct: 674 ELACYADVAEVMNDFLDIMNGVFNVLEQDRAHPQRK---KEGYITGADCPPLTRLLEVLQFFDSWQSNLRHTFGGK--WAPHFITDVSWKDMRSCILGFVAMSRYIFADRDLVEEEGGVPRRFLYPRMFSQDI-LEHRFAHIRTGMGTHK 817
BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 3.930e-11 Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = 1 Query: 4 LNPEIACYAEMAHEMNDFVDIFNGV-----------------------YGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRREL-ELFSDGESTFEDAFITRESWFDMRLAILGFVSVSRFVLGDESLVKEGARR 360
L+ E+ CYA +A +M+ F+DIFNG +GR +D + I+S D L+ L+ ++ +F+ WR L E + G+ T++ FIT SW D+R+ ILGFVS+ R++ ++S K RR
Sbjct: 504 LDLELDCYAALAAKMDAFIDIFNGKLYIIFVLAYCLVFLKQQMWWSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRR 646
BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 7.420e-9 Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1 Query: 7 NPEIA--CYAEMAHEMNDFVDIFNGVYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGWFETWRRELELF----SDGESTFEDAFITRES 267
+P++A CY +A +NDFVDIFNG YGR E KI+ K +TS + P L+RL+ IL +F+ W L+ F G+ ++ FITR S
Sbjct: 819 SPDLALGCYEGLAVHLNDFVDIFNGDYGRTKFERRAKINKMKGYVTSAEDPILERLMEILRYFDDWNDMLQEFPPPTGGGDVGWKKHFITRHS 911 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10217.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10217.234.1 >prot_H-canaliculatus_F_contig10217.234.1 ID=prot_H-canaliculatus_F_contig10217.234.1|Name=mRNA_H-canaliculatus_F_contig10217.234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp MAHEMNDFVDIFNGVYGRDSVEVNKKIDIQKSCITSKDSPHLDRLLGILGback to top mRNA from alignment at H-canaliculatus_F_contig10217:10..1423+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10217.234.1 ID=mRNA_H-canaliculatus_F_contig10217.234.1|Name=mRNA_H-canaliculatus_F_contig10217.234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10217:10..1423+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10217:10..1423+ >mRNA_H-canaliculatus_F_contig10217.234.1 ID=mRNA_H-canaliculatus_F_contig10217.234.1|Name=mRNA_H-canaliculatus_F_contig10217.234.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10217:10..1423+ (Hapterophycus canaliculatus Oshoro5f female)back to top |