Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1124 |
| Cds size | 1122 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928650.3433177-CDS-H-canaliculatus_F_contig10216:227..737 | 1622928650.3433177-CDS-H-canaliculatus_F_contig10216:227..737 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10216 228..737 + |
| 1696845513.6988807-CDS-H-canaliculatus_F_contig10216:227..737 | 1696845513.6988807-CDS-H-canaliculatus_F_contig10216:227..737 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10216 228..737 + |
| 1622928650.353793-CDS-H-canaliculatus_F_contig10216:1279..1891 | 1622928650.353793-CDS-H-canaliculatus_F_contig10216:1279..1891 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10216 1280..1891 + |
| 1696845513.7092075-CDS-H-canaliculatus_F_contig10216:1279..1891 | 1696845513.7092075-CDS-H-canaliculatus_F_contig10216:1279..1891 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10216 1280..1891 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10216.233.1 >prot_H-canaliculatus_F_contig10216.233.1 ID=prot_H-canaliculatus_F_contig10216.233.1|Name=mRNA_H-canaliculatus_F_contig10216.233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=374bp
ASAPTAAGDERAPWQPSPPKGSPPAPSSSPRKDLGTSPLASASGQQSAVL
PSSRRRQATRRRRRASNGTASAAPEASTEAGAGAQSAAGRAQQGRRRRGT
RAVVVEEAAPAVKVTAEASAAEERADVGERAGTGLAKELAAAVLSSLPLV
PFPSELAEIAGRPAAAPSQEGQMEQDERKLDTRQQEALFWPDLKVGMPEA
DSELVPEAAGTSADGSGPIDEATAVAAAQGDSGDSTSGCESEGLANDELE
RPTAEVEATLPEEPQGAALASGDGLDGGHAAADPASAPADADADADAADQ
ADPTTAVPGGEGVSAFEGLPTTATGGNHAHAGLPQGETDGQERDASAGGS
AAAGVGVGPTKDGAGAERIENGGA back to topmRNA from alignment at H-canaliculatus_F_contig10216:228..1892+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10216.233.1 ID=mRNA_H-canaliculatus_F_contig10216.233.1|Name=mRNA_H-canaliculatus_F_contig10216.233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1665bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10216:228..1892+ (Hapterophycus canaliculatus Oshoro5f female)
GCTTCCGCGCCCACGGCTGCTGGTGACGAGCGAGCCCCTTGGCAGCCTTC
GCCTCCAAAGGGTTCGCCTCCTGCCCCTTCTTCGTCTCCGCGGAAGGACC
TCGGGACCTCTCCCCTTGCCTCCGCCAGCGGTCAGCAGTCTGCCGTACTG
CCATCGTCCCGACGGCGACAGGCGACGAGAAGACGGAGAAGAGCCAGCAA
CGGCACCGCCTCTGCGGCTCCGGAGGCGTCGACGGAGGCGGGGGCAGGTG
CACAGTCGGCGGCGGGGCGTGCGCAGCAAGGGCGGAGACGGCGCGGTACT
CGCGCGGTGGTCGTCGAAGAAGCGGCGCCTGCGGTGAAGGTGACTGCGGA
AGCGAGTGCGGCGGAAGAGAGGGCCGACGTGGGAGAGAGGGCCGGCACGG
GGCTCGCCAAGGAGCTCGCGGCGGCGGTTCTGTCGTCTCTGCCGCTGGTT
CCCTTCCCTTCTGAGCTCGCGGAGATAGCGGGGAGGCCTGCCGCGGCGCC
GTCGCAGGAGGTGAGAACGGGGAGCTCGGATGCTCGTCCTCGGAGTAGCA
TAGCATGGCACCACTTCCGGCGTGGACGCGGTCGTAGTGTTAGGGCTTGG
CGCCGCCTCCCGCTGTGGGTGAAGCGTTTTGGTAAAACGTAACGTAGTTT
GTTTTCGTCAAGGGAAAGAACGCAGATTCCTGGTGTTTGTTGCATGGTTG
GCCTGCCCCTCGGATGGTTCTGGACCGAACTCTAGCGTTAAGGGTGGTGG
TACGCAGTCCGGGGTTGCCGGAATATGTTGAGCGCTTGGGTTTCGGGCCA
ACGAAAGGACTCCGCCATTCGCACGGCGGTGTTGGACAGTCGAAGTGGTC
TCTTGTGATGAACCGCCCGGCGATGTTGTATCGACGCCCGCGTCTCCTGT
GTTTCATCGACCCCTTCCACGGCCTTTGTTCGGAAGCACGATTTTTTTTC
TCCAAATCCGGTGATGGCGGCCGCGGCACGCTCGAAAAAGGCAGCAGCCA
TGCAGAATCCCTCACTCGTACGCATCTCTTTGTTGCACGCGGCGTGCTGC
AGGGTCAAATGGAGCAGGACGAGCGCAAGCTCGACACGAGGCAACAAGAG
GCTCTGTTTTGGCCGGACCTGAAGGTCGGGATGCCGGAGGCGGACTCAGA
ACTCGTGCCGGAGGCAGCGGGGACGTCCGCCGACGGCAGCGGCCCTATCG
ACGAAGCGACGGCCGTGGCGGCTGCCCAGGGCGACAGCGGTGACAGCACC
AGCGGTTGCGAGAGTGAGGGCCTGGCGAACGACGAGCTGGAGCGGCCGAC
GGCCGAAGTCGAGGCGACGTTACCGGAAGAGCCGCAGGGGGCCGCGTTGG
CGAGCGGGGACGGTTTGGATGGCGGTCACGCTGCTGCGGACCCGGCTTCG
GCTCCCGCCGACGCCGATGCCGACGCCGACGCTGCGGACCAGGCTGACCC
TACCACGGCCGTGCCCGGTGGAGAGGGCGTGTCTGCTTTCGAAGGGCTTC
CTACGACGGCGACCGGCGGCAATCACGCCCACGCTGGCCTTCCCCAAGGA
GAAACAGATGGCCAAGAGCGAGATGCTAGCGCTGGGGGTAGTGCTGCTGC
TGGTGTAGGCGTCGGGCCGACGAAGGACGGCGCCGGGGCCGAACGGATCG
AGAACGGCGGGGCTG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10216:228..1892+ >mRNA_H-canaliculatus_F_contig10216.233.1 ID=mRNA_H-canaliculatus_F_contig10216.233.1|Name=mRNA_H-canaliculatus_F_contig10216.233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2244bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10216:228..1892+ (Hapterophycus canaliculatus Oshoro5f female)
GCTTCCGCGCCCACGGCTGCTGGTGACGAGCGAGCCCCTTGGCAGCCTTC
GCCTCCAAAGGGTTCGCCTCCTGCCCCTTCTTCGTCTCCGCGGAAGGACC
TCGGGACCTCTCCCCTTGCCTCCGCCAGCGGTCAGCAGTCTGCCGTACTG
CCATCGTCCCGACGGCGACAGGCGACGAGAAGACGGAGAAGAGCCAGCAA
CGGCACCGCCTCTGCGGCTCCGGAGGCGTCGACGGAGGCGGGGGCAGGTG
CACAGTCGGCGGCGGGGCGTGCGCAGCAAGGGCGGAGACGGCGCGGTACT
CGCGCGGTGGTCGTCGAAGAAGCGGCGCCTGCGGTGAAGGTGACTGCGGA
AGCGAGTGCGGCGGAAGAGAGGGCCGACGTGGGAGAGAGGGCCGGCACGG
GGCTCGCCAAGGAGCTCGCGGCGGCGGTTCTGTCGTCTCTGCCGCTGGTT
CCCTTCCCTTCTGAGCTCGCGGAGATAGCGGGGAGGCCTGCCGCGGCGCC
GTCGCAGGAGGCTTCCGCGCCCACGGCTGCTGGTGACGAGCGAGCCCCTT
GGCAGCCTTCGCCTCCAAAGGGTTCGCCTCCTGCCCCTTCTTCGTCTCCG
CGGAAGGACCTCGGGACCTCTCCCCTTGCCTCCGCCAGCGGTCAGCAGTC
TGCCGTACTGCCATCGTCCCGACGGCGACAGGCGACGAGAAGACGGAGAA
GAGCCAGCAACGGCACCGCCTCTGCGGCTCCGGAGGCGTCGACGGAGGCG
GGGGCAGGTGCACAGTCGGCGGCGGGGCGTGCGCAGCAAGGGCGGAGACG
GCGCGGTACTCGCGCGGTGGTCGTCGAAGAAGCGGCGCCTGCGGTGAAGG
TGACTGCGGAAGCGAGTGCGGCGGAAGAGAGGGCCGACGTGGGAGAGAGG
GCCGGCACGGGGCTCGCCAAGGAGCTCGCGGCGGCGGTTCTGTCGTCTCT
GCCGCTGGTTCCCTTCCCTTCTGAGCTCGCGGAGATAGCGGGGAGGCCTG
CCGCGGCGCCGTCGCAGGAGGGTCAAATGGAGCAGGACGAGCGCAAGCTC
GACACGAGGCAACAAGAGGCTCTGTTTTGGCCGGACCTGAAGGTCGGGAT
GCCGGAGGCGGACTCAGAACTCGTGCCGGAGGCAGCGGGGACGTCCGCCG
ACGGCAGCGGCCCTATCGACGAAGCGACGGCCGTGGCGGCTGCCCAGGGC
GACAGCGGTGACAGCACCAGCGGTTGCGAGAGTGAGGGCCTGGCGAACGA
CGAGCTGGAGCGGCCGACGGCCGAAGTCGAGGCGACGTTACCGGAAGAGC
CGCAGGGGGCCGCGTTGGCGAGCGGGGACGGTTTGGATGGCGGTCACGCT
GCTGCGGACCCGGCTTCGGCTCCCGCCGACGCCGATGCCGACGCCGACGC
TGCGGACCAGGCTGACCCTACCACGGCCGTGCCCGGTGGAGAGGGCGTGT
CTGCTTTCGAAGGGCTTCCTACGACGGCGACCGGCGGCAATCACGCCCAC
GCTGGCCTTCCCCAAGGAGAAACAGATGGCCAAGAGCGAGATGCTAGCGC
TGGGGGTAGTGCTGCTGCTGGTGTAGGCGTCGGGCCGACGAAGGACGGCG
CCGGGGCCGAACGGATCGAGAACGGCGGGGCTGGTCAAATGGAGCAGGAC
GAGCGCAAGCTCGACACGAGGCAACAAGAGGCTCTGTTTTGGCCGGACCT
GAAGGTCGGGATGCCGGAGGCGGACTCAGAACTCGTGCCGGAGGCAGCGG
GGACGTCCGCCGACGGCAGCGGCCCTATCGACGAAGCGACGGCCGTGGCG
GCTGCCCAGGGCGACAGCGGTGACAGCACCAGCGGTTGCGAGAGTGAGGG
CCTGGCGAACGACGAGCTGGAGCGGCCGACGGCCGAAGTCGAGGCGACGT
TACCGGAAGAGCCGCAGGGGGCCGCGTTGGCGAGCGGGGACGGTTTGGAT
GGCGGTCACGCTGCTGCGGACCCGGCTTCGGCTCCCGCCGACGCCGATGC
CGACGCCGACGCTGCGGACCAGGCTGACCCTACCACGGCCGTGCCCGGTG
GAGAGGGCGTGTCTGCTTTCGAAGGGCTTCCTACGACGGCGACCGGCGGC
AATCACGCCCACGCTGGCCTTCCCCAAGGAGAAACAGATGGCCAAGAGCG
AGATGCTAGCGCTGGGGGTAGTGCTGCTGCTGGTGTAGGCGTCGGGCCGA
CGAAGGACGGCGCCGGGGCCGAACGGATCGAGAACGGCGGGGCT back to top
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