Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 624 |
| Cds size | 363 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928649.4429018-UTR-H-canaliculatus_F_contig1021:5116..5325 | 1622928649.4429018-UTR-H-canaliculatus_F_contig1021:5116..5325 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1021 5117..5325 + |
| 1696845513.0874643-UTR-H-canaliculatus_F_contig1021:5116..5325 | 1696845513.0874643-UTR-H-canaliculatus_F_contig1021:5116..5325 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1021 5117..5325 + |
| 1622928649.4867342-UTR-H-canaliculatus_F_contig1021:5703..5755 | 1622928649.4867342-UTR-H-canaliculatus_F_contig1021:5703..5755 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1021 5704..5755 + |
| 1696845513.1173322-UTR-H-canaliculatus_F_contig1021:5703..5755 | 1696845513.1173322-UTR-H-canaliculatus_F_contig1021:5703..5755 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1021 5704..5755 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928649.45943-CDS-H-canaliculatus_F_contig1021:5325..5460 | 1622928649.45943-CDS-H-canaliculatus_F_contig1021:5325..5460 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1021 5326..5460 + |
| 1696845513.0996192-CDS-H-canaliculatus_F_contig1021:5325..5460 | 1696845513.0996192-CDS-H-canaliculatus_F_contig1021:5325..5460 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1021 5326..5460 + |
| 1622928649.4704144-CDS-H-canaliculatus_F_contig1021:5475..5703 | 1622928649.4704144-CDS-H-canaliculatus_F_contig1021:5475..5703 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1021 5476..5703 + |
| 1696845513.1084435-CDS-H-canaliculatus_F_contig1021:5475..5703 | 1696845513.1084435-CDS-H-canaliculatus_F_contig1021:5475..5703 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1021 5476..5703 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1021.225.1 >prot_H-canaliculatus_F_contig1021.225.1 ID=prot_H-canaliculatus_F_contig1021.225.1|Name=mRNA_H-canaliculatus_F_contig1021.225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MPLLRNDRHSWLTVLTLLRENGSSETVCRLSHHGLLRRPPSSTKRTCPVG
KWTFADSLCTQAGSLNVSILNRNPMQTSPLIRSALLLWVVATYLASTNAR
KVGSRTTASNPPSGATAKLL* back to topmRNA from alignment at H-canaliculatus_F_contig1021:5117..5755+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1021.225.1 ID=mRNA_H-canaliculatus_F_contig1021.225.1|Name=mRNA_H-canaliculatus_F_contig1021.225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=639bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:5117..5755+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAAGGAAAAGGCTTGGAACGAAATAAGTTGTGGTGCTGGTGCGGATGC
AGGATGCTTCTCGTGGGATCTTTGAACTGCGTCTTGCTTGAATGAAGTGT
CAAGAGAGGTAGAGGAGCATAAAATAGTCTTGAAACCTATCTCAGGGGAA
ACTCGTGAGGCTTGGGGCGATGCTCTTTCATACGCAAAACGCTGTTCGTG
GTGCTTGCCATGCCTCTCCTGCGAAATGACCGACATTCTTGGTTGACAGT
TTTAACTCTGCTCCGAGAGAATGGCAGCAGCGAAACGGTCTGTCGGCTCT
CCCACCACGGTTTACTGAGAAGGCCACCCTCAAGCACAAAACGTGCGTGG
CTCCTGAAGACTTGTCCCGTAGGAAAATGGACATTCGCAGATTCATTGTG
CACACAAGCGGGCAGTCTGAACGTGTCCATCCTAAATAGGAATCCGATGC
AAACGAGCCCGCTGATTCGGTCTGCTCTTCTTCTATGGGTCGTGGCGACT
TATCTTGCAAGCACCAACGCCAGAAAGGTCGGCTCTCGCACCACAGCATC
CAACCCACCATCTGGAGCAACAGCCAAACTACTGTAAACAGAAAAATATG
TGAAGATGATTCACTCGCCTTTTTCCCGGTTGAGCGTCC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1021:5117..5755+ >mRNA_H-canaliculatus_F_contig1021.225.1 ID=mRNA_H-canaliculatus_F_contig1021.225.1|Name=mRNA_H-canaliculatus_F_contig1021.225.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1021:5117..5755+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTCTCCTGCGAAATGACCGACATTCTTGGTTGACAGTTTTAACTCT
GCTCCGAGAGAATGGCAGCAGCGAAACGGTCTGTCGGCTCTCCCACCACG
GTTTACTGAGAAGGCCACCCTCAAGCACAAAACGTATGCCTCTCCTGCGA
AATGACCGACATTCTTGGTTGACAGTTTTAACTCTGCTCCGAGAGAATGG
CAGCAGCGAAACGGTCTGTCGGCTCTCCCACCACGGTTTACTGAGAAGGC
CACCCTCAAGCACAAAACGTACTTGTCCCGTAGGAAAATGGACATTCGCA
GATTCATTGTGCACACAAGCGGGCAGTCTGAACGTGTCCATCCTAAATAG
GAATCCGATGCAAACGAGCCCGCTGATTCGGTCTGCTCTTCTTCTATGGG
TCGTGGCGACTTATCTTGCAAGCACCAACGCCAGAAAGGTCGGCTCTCGC
ACCACAGCATCCAACCCACCATCTGGAGCAACAGCCAAACTACTGTAAAC
TTGTCCCGTAGGAAAATGGACATTCGCAGATTCATTGTGCACACAAGCGG
GCAGTCTGAACGTGTCCATCCTAAATAGGAATCCGATGCAAACGAGCCCG
CTGATTCGGTCTGCTCTTCTTCTATGGGTCGTGGCGACTTATCTTGCAAG
CACCAACGCCAGAAAGGTCGGCTCTCGCACCACAGCATCCAACCCACCAT
CTGGAGCAACAGCCAAACTACTGTAA back to top
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