mRNA_H-canaliculatus_F_contig102.218.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig102.218.1 vs. uniprot
Match: A0A6H5KHP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP2_9PHAE) HSP 1 Score: 509 bits (1311), Expect = 1.580e-159 Identity = 497/1016 (48.92%), Postives = 557/1016 (54.82%), Query Frame = 3 Query: 30 MTRGCGILVVAAFAATATWPSPSPCRSSSIAWGFLTTTLPSTASSPNAANRRTLHSHRTGRGGSWSAAAKAAAAGERRESICDSSGRALHMIAAAEDEGSEVGLGSRRQVLLSSSPCRPFCNSNCRIGRRTLGLAGANYGGGDGXXXXLGRGGLDPESVARAREAAKNDDYDWFMEFIEGGEDAGDDGTGIDPEDSSRGSATGVLNNRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYDADLVDGSATXXXXXXXXXXXXXTGRGFQPPTNG-NRGDERRRGQRPSAAADSAYDYDLDDEYDREPGRGGWDYDPGLSAGIGERRRDVQLDKVRAKTKPASMRLPLEDDRD-MEAATRERTEAQGXXXXXXXXTAVKFEPVDSEKARLLIEGLGYTEPEVACMDPDMADLAIERSIRRPGSGMPSDWVAVGVPPPPNTRAVATEPTTPLSSSSSSFSSQTYFGEGA---AASPGAGAFGGNGAAGGVDGGALDLDAILGDGFDDD------YEXXXXXXXXXXXXREGTRRLDRSGYPSGDWTGDREQGRRGPKTREEDRRRDSAYSQDGGGRRQGREGRRGDGGNGYGYDDDNDARGSDSYYYEDEGAPQNGGRARGYAREDGA--DIRDGVRRGRRTDAGXXXXXXXXXXXXXXXXEPVISAAERYEREVFGGLGGEAAGGDGGDGRG---------RSDEDDDAKLWTGVGPDGPWPTMEEFTKLLREETEVRLGLVGPWAAEVVSVENRFRLQAYEKWLEVLDKGIGATLEEAGVFDAAFSTDDEDYDDGYDDQRRGRGGPGGSGFSPGTSNNNLYDNYTNYGYRTSGD--GGSRRDDGRGGXXXXDGYGYDPQGRQDERGFDYDDRYGGEYDSYRQRPRRPRA------PGRQKFDVGSFLRSGAQSIMQPGVGMEEKAAEFERRYPGRTRSNALDFGDEDDANTVDSSVRSNRDEGFEGRRSQRARREVE-EGDGEPRGSRRRRREDRGRWSQAGYQDEEDDYEY 2984 MTRG G+L+ AA A TATWPS +P RS+S AWGFL A++P +AN + S SR ++LL S R T GG XXXX GLD ESVARAREAAK DDYDWFMEFI G+D E+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX GRGFQP + G E RR +RPS A D+AYDYDLD+EYD+EPGRGGWDYDPGLSAGIG RRRDVQ+DKVRAK K ASMR PLEDD+ MEA R E G A +FEPV S+KA+ L E LGYTE EVAC+DPDMADLAIER+IRRP SGMP DWVAVG+PP YFG GA A G + G + G VD G+LDLDAILGDG+D + XXXXXXXXXXXX G + GRRG REED RG D GR RG DG R RR RR + IS AERYER++FG LGGE DG+G +DE+D KLWTGVGPDGPWPTMEEFTKLLREETEVRL LVGPWAAEVV++ENRFRLQAYEKWLEVLDKGIG TLEEAGVFDAAF TDD+DYDD + R R SG NNLYD+YT+YGY D GG R GYD +G++DERGFDYDDR G + RQR RR R P R+KFDVG+FLRSGAQ+IMQPG GMEEKAA+FERRYPGRT S D GD++ A+ R+ + F GRR RARRE + + D + RG RR R DRG S GY DEED Y+Y Sbjct: 1 MTRGRGVLLAAAVATTATWPSSTPGRSTSSAWGFL-------AAAPRSAN-------------------------------------------CLDANKSTSSTSSRARLLLLPS-------------RAT---------GGXXXXXXXXXXGLDAESVARAREAAKKDDYDWFMEFI-----------GVDEEEXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGFQPLSGGVGTTGEMRRERRPSPA-DTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKAKSASMRRPLEDDQQSMEAEQEIRQEFAGR--------AAEFEPVGSKKAKALTEDLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXX--------XXYFGGGATTAAEDVGRTSRGSSDRGGVVDDGSLDLDAILGDGYDYNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAPQMGRRGMDDREEDF----------------------------------VLRGRDE------------GRGRGRREMDGGVGGPRGQSRRPRRK-------------------KKNISPAERYERQIFGELGGE-------DGKGAGNRRPLWDENDEEDGGKLWTGVGPDGPWPTMEEFTKLLREETEVRLSLVGPWAAEVVALENRFRLQAYEKWLEVLDKGIGETLEEAGVFDAAF-TDDDDYDDDGNIDGRNRAARRRSGT------NNLYDDYTSYGYGQDEDVLGGGRS-------------GYDVEGQRDERGFDYDDRLKGGEGNRRQRQRRQRGWDEDTEPSRRKFDVGTFLRSGAQNIMQPGAGMEEKAAQFERRYPGRTGS-YYDDGDDNAASAGSPGGRNTGHDSF-GRRG-RARREGDYDYDDDVRGRRRGRGGDRG-GSSPGYVDEED-YDY 816
BLAST of mRNA_H-canaliculatus_F_contig102.218.1 vs. uniprot
Match: D7G0C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C6_ECTSI) HSP 1 Score: 376 bits (966), Expect = 4.560e-114 Identity = 279/580 (48.10%), Postives = 317/580 (54.66%), Query Frame = 3 Query: 885 RGQRPSAAADSAYDYDLDDEYDREPGRGGWDYDPGLSAGIGERRRDVQLDKVRAKTKPASMRLPLEDDRDMEAATRERTEAQGXXXXXXXXTAVKFEPVDSEKARLLIEGLGYTEPEVACMDPDMADLAIERSIRRPGSGMPSDWVAVGVPPPPNTRAVATEPTTPLSSSSSSFSSQTYFGEGAAASPGAGAFGGNGAAGGVDGGALDLDAILGDGFDDDYEXXXXXXXXXXXXREGTRRLDRSGYPSGDWTGDREQGRRGPKTREEDRRRDSAYSQDGGGRRQGREGRRGDGGNGYGYDDDNDARGSDSYYYEDEGAPQNGGRARGYAREDGADIR---DGVRRGRRTDAGXXXXXXXXXXXXXXXXEPVISAAERYEREVFGGLGGEAAGGDGGDGRG---------RSDEDDDAKLWTGVGPDGPWPTMEEFTKLLREETEVRLGLVGPWAAEVVSVENRFRLQAYEKWLEVLDKGIGATLEEAGVFDAAFSTDDEDYDDGYDDQRRGRGGPGGSGFSPGTSNNNLYDNYTNYGYRTSGDGGSRRDDGRGGXXXXDGYGYDPQGRQDERGFDYDDRY 2588 R +R +++AD+AYDYDLD+EYD+EPGRGGWDYDPGLSAGIG RRRDVQ+DKVRAKTK ASMR PLEDD+ A +E+ A AV+FEPV S+KA+ LIE LGYTE EVAC+DPDMADLAIER+IRRP SGMP DWVAVG+P + S G+G GG VD G+LDLDAILGDG+D Y+ GG RR+G E AP G R Y RE+ R +G RGRR G IS AERYER++FG LGGE DG+G DE+D+ KLWTGVGPDGPWPTMEEFTKLLREETEVRL LVGPWAAEVV++ENRFRLQAYEKWLEVLDKGIG TLEEAGVFDAAF TDD+DYDD + R R SG NNLYD+YT+YGY D R GR G YD QG++DERGFDYDDRY Sbjct: 2 RRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQQSMEAEQEQEFA---------GRAVEFEPVGSKKAKALIEDLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDVVRTSRGSGDRGGV-----VDDGSLDLDAILGDGYD--------------------------------------------------------YNGVGGRRRKGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-APHLG-RGGMYDREEDLFPRGRDEGRGRGRREMDGGVGGPRGQSKRPRRKERTEISPAERYERQIFGELGGE-------DGKGAGNRRALWDEDDEEDEGKLWTGVGPDGPWPTMEEFTKLLREETEVRLSLVGPWAAEVVALENRFRLQAYEKWLEVLDKGIGETLEEAGVFDAAF-TDDDDYDDDGNTDGRSRTARRRSGT------NNLYDDYTSYGYGQDAD---VRGAGRSG--------YDVQGQRDERGFDYDDRY 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig102.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig102.218.1 >prot_H-canaliculatus_F_contig102.218.1 ID=prot_H-canaliculatus_F_contig102.218.1|Name=mRNA_H-canaliculatus_F_contig102.218.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=986bp MTRGCGILVVAAFAATATWPSPSPCRSSSIAWGFLTTTLPSTASSPNAANback to top mRNA from alignment at H-canaliculatus_F_contig102:38966..56953+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig102.218.1 ID=mRNA_H-canaliculatus_F_contig102.218.1|Name=mRNA_H-canaliculatus_F_contig102.218.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=17988bp|location=Sequence derived from alignment at H-canaliculatus_F_contig102:38966..56953+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig102:38966..56953+ >mRNA_H-canaliculatus_F_contig102.218.1 ID=mRNA_H-canaliculatus_F_contig102.218.1|Name=mRNA_H-canaliculatus_F_contig102.218.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5916bp|location=Sequence derived from alignment at H-canaliculatus_F_contig102:38966..56953+ (Hapterophycus canaliculatus Oshoro5f female)back to top |