mRNA_H-canaliculatus_F_contig10188.208.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10188.208.1 vs. uniprot
Match: D7G160_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G160_ECTSI) HSP 1 Score: 143 bits (360), Expect = 3.940e-37 Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 2 Query: 2 RHGLHRDHRSAEHLGLAPEALECLTTALPLLNDKKRHNKETLLSFFQLCEEAVLGATDDCSGDEGSNRRTLGLARALLGGMLAHRRLAEVRTSNCRQRLERYVHEIDQLL 331
RH R+HR AEH L PE LECL ALPL+NDK H+K LLS FQLCEEAVL A+DDCS D +RTLGLA+A++ MLAH+RL EVRTS CR+RL+RYV EID LL
Sbjct: 87 RHKQDREHRGAEHFALVPEVLECLQIALPLINDKTLHDKAKLLSVFQLCEEAVLAASDDCSDDNDVCKRTLGLAKAVVVDMLAHKRLGEVRTSTCRERLDRYVQEIDDLL 196
BLAST of mRNA_H-canaliculatus_F_contig10188.208.1 vs. uniprot
Match: A0A6H5K7K2_9PHAE (NTP_transf_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K2_9PHAE) HSP 1 Score: 143 bits (360), Expect = 4.010e-37 Identity = 73/122 (59.84%), Postives = 87/122 (71.31%), Query Frame = 2 Query: 2 RHGLHRDHRSAEHLGLAPEALECLTTALPLLNDKKRHNKETLLSFFQLCEEAVLGATDDCSGDEGSNRRTLGLARALLGGMLAHRRLAEVRTSNCRQRLERYVHEIDQLLAECARVQRHCPG 367
RH R+HR AEH+ L PE LECL ALPL+N+K+ H+K LLS FQLCEEAVL A+DDCS D RTLGLA+A++ MLAH+RL EVRTS CR+RL+RYV EID LL + H G
Sbjct: 91 RHKQDREHRGAEHVALVPEVLECLQIALPLINEKRLHDKAKLLSVFQLCEEAVLAASDDCSDDNDVCTRTLGLAKAVVVDMLAHKRLGEVRTSTCRERLDRYVQEIDDLLWRLDEMLTHSTG 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10188.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10188.208.1 >prot_H-canaliculatus_F_contig10188.208.1 ID=prot_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp AARLAPRSPERRAPWACPGGAGVPHNRAPTVERQETPQQGDAPIFFSALRback to top mRNA from alignment at H-canaliculatus_F_contig10188:1376..2763+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10188.208.1 ID=mRNA_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1388bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10188:1376..2763+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10188:1376..2763+ >mRNA_H-canaliculatus_F_contig10188.208.1 ID=mRNA_H-canaliculatus_F_contig10188.208.1|Name=mRNA_H-canaliculatus_F_contig10188.208.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10188:1376..2763+ (Hapterophycus canaliculatus Oshoro5f female)back to top |