Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 648 |
| Cds size | 357 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928646.9559338-UTR-H-canaliculatus_F_contig10180:2268..2413 | 1622928646.9559338-UTR-H-canaliculatus_F_contig10180:2268..2413 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10180 2269..2413 + |
| 1696845511.8549764-UTR-H-canaliculatus_F_contig10180:2268..2413 | 1696845511.8549764-UTR-H-canaliculatus_F_contig10180:2268..2413 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10180 2269..2413 + |
| 1622928646.9776576-UTR-H-canaliculatus_F_contig10180:2770..2916 | 1622928646.9776576-UTR-H-canaliculatus_F_contig10180:2770..2916 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10180 2771..2916 + |
| 1696845511.8763623-UTR-H-canaliculatus_F_contig10180:2770..2916 | 1696845511.8763623-UTR-H-canaliculatus_F_contig10180:2770..2916 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10180 2771..2916 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928646.9678893-CDS-H-canaliculatus_F_contig10180:2413..2770 | 1622928646.9678893-CDS-H-canaliculatus_F_contig10180:2413..2770 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10180 2414..2770 + |
| 1696845511.865253-CDS-H-canaliculatus_F_contig10180:2413..2770 | 1696845511.865253-CDS-H-canaliculatus_F_contig10180:2413..2770 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10180 2414..2770 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10180.205.1 >prot_H-canaliculatus_F_contig10180.205.1 ID=prot_H-canaliculatus_F_contig10180.205.1|Name=mRNA_H-canaliculatus_F_contig10180.205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
MFSLETDDELEGNHSHLIHGRCPTAHNGSSRTHSRSSWSSRSIDPVLVQS
WVSTSGGRGGGRCKLLFLRMFFLLFLLRPPPRKIENHRNIEDSAAKPILA
ADDEERTKGTCAQQQMKT* back to topmRNA from alignment at H-canaliculatus_F_contig10180:2269..2916+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10180.205.1 ID=mRNA_H-canaliculatus_F_contig10180.205.1|Name=mRNA_H-canaliculatus_F_contig10180.205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10180:2269..2916+ (Hapterophycus canaliculatus Oshoro5f female)
ATAACATTTGCGGTAAGTTACACACAAAATATCTCCTACTCATGCTTTTG
TCCCCATCAATGAACCCTCACTGTTTTGAACTCAACATAAGCCTCGGGGT
ACGCCTCACACGACGTACCTCAGGAGGTATTCTAACGGTGTTGTTATGTT
TTCTTTAGAAACAGATGATGAATTGGAAGGCAATCACTCACACCTTATCC
ACGGGAGGTGTCCTACCGCTCACAATGGCAGCAGCAGGACCCACAGCAGG
AGCAGCTGGAGCAGCAGGAGCATCGACCCTGTCCTCGTTCAGTCTTGGGT
TTCCACCAGCGGTGGTAGAGGTGGTGGACGATGCAAGCTTCTTTTCCTCC
GTATGTTTTTCCTGCTGTTTCTTCTGCGTCCACCACCCAGAAAGATCGAA
AATCACCGGAATATCGAAGATAGCGCAGCGAAACCCATACTCGCGGCTGA
CGACGAAGAACGAACGAAGGGGACGTGCGCACAGCAGCAGATGAAAACGT
GATCGACATCGATGCTTTGGAGAAGGTATGGAACTTGTGGGAAGGAATTA
TCGTTGACCAATAGCTCGGCGTTCACGACGAGTTCGTGCGCGGGAAACGG
ACCAATGTCAGCTCCCATGGGCGGGGAACGGTCGGCTACAAGGTCGCA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10180:2269..2916+ >mRNA_H-canaliculatus_F_contig10180.205.1 ID=mRNA_H-canaliculatus_F_contig10180.205.1|Name=mRNA_H-canaliculatus_F_contig10180.205.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10180:2269..2916+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTTCTTTAGAAACAGATGATGAATTGGAAGGCAATCACTCACACCT
TATCCACGGGAGGTGTCCTACCGCTCACAATGGCAGCAGCAGGACCCACA
GCAGGAGCAGCTGGAGCAGCAGGAGCATCGACCCTGTCCTCGTTCAGTCT
TGGGTTTCCACCAGCGGTGGTAGAGGTGGTGGACGATGCAAGCTTCTTTT
CCTCCGTATGTTTTTCCTGCTGTTTCTTCTGCGTCCACCACCCAGAAAGA
TCGAAAATCACCGGAATATCGAAGATAGCGCAGCGAAACCCATACTCGCG
GCTGACGACGAAGAACGAACGAAGGGGACGTGCGCACAGCAGCAGATGAA
AACGTGAATGTTTTCTTTAGAAACAGATGATGAATTGGAAGGCAATCACT
CACACCTTATCCACGGGAGGTGTCCTACCGCTCACAATGGCAGCAGCAGG
ACCCACAGCAGGAGCAGCTGGAGCAGCAGGAGCATCGACCCTGTCCTCGT
TCAGTCTTGGGTTTCCACCAGCGGTGGTAGAGGTGGTGGACGATGCAAGC
TTCTTTTCCTCCGTATGTTTTTCCTGCTGTTTCTTCTGCGTCCACCACCC
AGAAAGATCGAAAATCACCGGAATATCGAAGATAGCGCAGCGAAACCCAT
ACTCGCGGCTGACGACGAAGAACGAACGAAGGGGACGTGCGCACAGCAGC
AGATGAAAACGTGA back to top
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