Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 646 |
| Cds size | 537 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928646.7734501-CDS-H-canaliculatus_F_contig10174:1081..1618 | 1622928646.7734501-CDS-H-canaliculatus_F_contig10174:1081..1618 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10174 1082..1618 + |
| 1696845511.7533205-CDS-H-canaliculatus_F_contig10174:1081..1618 | 1696845511.7533205-CDS-H-canaliculatus_F_contig10174:1081..1618 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10174 1082..1618 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928646.7863386-UTR-H-canaliculatus_F_contig10174:1618..1727 | 1622928646.7863386-UTR-H-canaliculatus_F_contig10174:1618..1727 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10174 1619..1727 + |
| 1696845511.7672591-UTR-H-canaliculatus_F_contig10174:1618..1727 | 1696845511.7672591-UTR-H-canaliculatus_F_contig10174:1618..1727 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10174 1619..1727 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10174.201.1 >prot_H-canaliculatus_F_contig10174.201.1 ID=prot_H-canaliculatus_F_contig10174.201.1|Name=mRNA_H-canaliculatus_F_contig10174.201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=179bp
MSLSTCSSVRTQQSRRSASHPRSTRTAASKLRASAVVAEHRGGAAFTLGF
FAGRRLSAHRPPLYVKLRGRGLSLGIFLLSRTSRGSSAAGRWAASHPSRV
VCPPLPLNYRGPTNGSGRCPRLGGLAVANGPAIHSPKRRADFHGCPSCSA
WVPPPPGTCPSTQDTTVLLLPPTSLRSL* back to topmRNA from alignment at H-canaliculatus_F_contig10174:1082..1727+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10174.201.1 ID=mRNA_H-canaliculatus_F_contig10174.201.1|Name=mRNA_H-canaliculatus_F_contig10174.201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=646bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10174:1082..1727+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCTCTCGACTTGTTCGTCCGTGCGCACGCAACAGTCTCGACGGTC
GGCGTCCCACCCCCGTTCGACTCGGACAGCGGCGTCAAAACTACGCGCGT
CGGCAGTGGTGGCGGAGCACCGCGGCGGCGCTGCCTTCACGCTTGGGTTT
TTCGCTGGCCGCCGTTTGAGTGCACACCGTCCACCGTTGTACGTTAAACT
TCGCGGCCGTGGTCTTTCCCTCGGTATTTTTTTGCTCTCGAGAACGTCAC
GGGGCAGCTCGGCGGCGGGGCGGTGGGCCGCGAGTCATCCGTCCCGCGTT
GTTTGTCCGCCGCTCCCGCTGAACTACAGAGGGCCGACGAACGGCAGCGG
CAGGTGCCCTCGCTTGGGAGGTCTCGCCGTCGCCAATGGACCGGCAATCC
ACAGCCCAAAGCGACGTGCTGACTTCCACGGCTGCCCGAGTTGTTCTGCT
TGGGTGCCTCCACCCCCCGGCACGTGTCCATCCACGCAGGACACTACCGT
ACTGCTGCTGCCCCCTACATCTCTCCGTTCCTTGTAGGTTTTGGCCGATA
AAGCAACGAGGTCGTCGTTCGCCACTCGCCGCCTTGACTGCGGGAAAACC
AACCCACGAACGGTTCTCCTTCAGCGATGCCAAGTTCCCCAACCCT back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10174:1082..1727+ >mRNA_H-canaliculatus_F_contig10174.201.1 ID=mRNA_H-canaliculatus_F_contig10174.201.1|Name=mRNA_H-canaliculatus_F_contig10174.201.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1074bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10174:1082..1727+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCTCTCGACTTGTTCGTCCGTGCGCACGCAACAGTCTCGACGGTC
GGCGTCCCACCCCCGTTCGACTCGGACAGCGGCGTCAAAACTACGCGCGT
CGGCAGTGGTGGCGGAGCACCGCGGCGGCGCTGCCTTCACGCTTGGGTTT
TTCGCTGGCCGCCGTTTGAGTGCACACCGTCCACCGTTGTACGTTAAACT
TCGCGGCCGTGGTCTTTCCCTCGGTATTTTTTTGCTCTCGAGAACGTCAC
GGGGCAGCTCGGCGGCGGGGCGGTGGGCCGCGAGTCATCCGTCCCGCGTT
GTTTGTCCGCCGCTCCCGCTGAACTACAGAGGGCCGACGAACGGCAGCGG
CAGGTGCCCTCGCTTGGGAGGTCTCGCCGTCGCCAATGGACCGGCAATCC
ACAGCCCAAAGCGACGTGCTGACTTCCACGGCTGCCCGAGTTGTTCTGCT
TGGGTGCCTCCACCCCCCGGCACGTGTCCATCCACGCAGGACACTACCGT
ACTGCTGCTGCCCCCTACATCTCTCCGTTCCTTGTAGATGTCCCTCTCGA
CTTGTTCGTCCGTGCGCACGCAACAGTCTCGACGGTCGGCGTCCCACCCC
CGTTCGACTCGGACAGCGGCGTCAAAACTACGCGCGTCGGCAGTGGTGGC
GGAGCACCGCGGCGGCGCTGCCTTCACGCTTGGGTTTTTCGCTGGCCGCC
GTTTGAGTGCACACCGTCCACCGTTGTACGTTAAACTTCGCGGCCGTGGT
CTTTCCCTCGGTATTTTTTTGCTCTCGAGAACGTCACGGGGCAGCTCGGC
GGCGGGGCGGTGGGCCGCGAGTCATCCGTCCCGCGTTGTTTGTCCGCCGC
TCCCGCTGAACTACAGAGGGCCGACGAACGGCAGCGGCAGGTGCCCTCGC
TTGGGAGGTCTCGCCGTCGCCAATGGACCGGCAATCCACAGCCCAAAGCG
ACGTGCTGACTTCCACGGCTGCCCGAGTTGTTCTGCTTGGGTGCCTCCAC
CCCCCGGCACGTGTCCATCCACGCAGGACACTACCGTACTGCTGCTGCCC
CCTACATCTCTCCGTTCCTTGTAG back to top
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