mRNA_H-canaliculatus_F_contig10168.195.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10168.195.1 vs. uniprot
Match: D8LKG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG0_ECTSI) HSP 1 Score: 374 bits (960), Expect = 7.330e-123 Identity = 206/319 (64.58%), Postives = 226/319 (70.85%), Query Frame = 2 Query: 404 WTEVLDDATNSVYFFNTSTQESSWDLGKDERVASGIYNPSETNGSTLGEFYHSSREGEQPSD-SSSWKDQAREHSSQHADVLQDFEVPKAVSEAVGRAASAQAWPPTVDGRPSRLERWDVLKARHPYREHFATGEAWRLEHPEFEPKLCFYAFDTAVEHVEARPQRYWVEEAEAPFRCRLQKNRQKFSRDMSKWEARAPVKRQTKKNCGESGEPKPGQKLPGDERFSSDSGAGDD-----------LGEGGDGTGFFAFPLVVHNSHAHHVDWTSGPDRYQITQSAEPEWGWSRLFTFFAYAASKYHVLETTEPPLAQK 1324
W E DD VYF N T ESSWDLG DER+ASGIY+PS + L Y SS+ E S SSSW+D+ VL F+VP+ VSEAVGRA SA WP TVDGRPSRLERWDVLKA PYREHF+TGEAWRLEHPEFEPKLCFYAFDTAVEHVE RYWVEEAEAPFRCRLQ++ KFSRD++ WEARAP K+ + G SG PG L GDE + + GD G GFFAFPLVVHNSHAHHVDWTSGPDRYQITQ +EPEWGW+RLFTFFAYAASKYHVLETT+ PLAQK
Sbjct: 11 WVEEQDD-DGDVYFVNADTMESSWDLGTDERLASGIYHPSGGDDDALIGPYSSSQTLEAESSISSSWRDE----------VLVGFQVPQEVSEAVGRAGSAHIWPRTVDGRPSRLERWDVLKASDPYREHFSTGEAWRLEHPEFEPKLCFYAFDTAVEHVE----RYWVEEAEAPFRCRLQRDGLKFSRDIATWEARAPAKKNDN-DKGNSGVGSPGGDLDGDEHWGGEGVGGDGRXXXXXXXXXXXXXXXXGAGFFAFPLVVHNSHAHHVDWTSGPDRYQITQDSEPEWGWTRLFTFFAYAASKYHVLETTQAPLAQK 313
BLAST of mRNA_H-canaliculatus_F_contig10168.195.1 vs. uniprot
Match: A0A7S3Y5K5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5K5_HETAK) HSP 1 Score: 89.4 bits (220), Expect = 3.870e-16 Identity = 64/189 (33.86%), Postives = 85/189 (44.97%), Query Frame = 2 Query: 740 RLERWDVLKAR---HPYREHFATGEAWRLEHPEFEPKLCFYAFDTAVEHVEARPQRYWVEEAEAPFRCRLQKNRQKFSRDMSKWEARAPVKRQTKKNCGESGEPKPGQKLPGDERFSSDSGAGDDLGEGGDGTGFFAFPLVVHNSHAHHVDWTSGPDRYQITQSAEPEWGWSRLFTFFAYAASKYHVLE 1297
+LER +VL+ PYR+ F EA ++ F FYAF AV H + VE AP R R ++ R F RD++KW ++KK+ F+A+P ++ HVDW+SGPDRY I+Q P GW R F F+AY ASKYHVLE
Sbjct: 23 KLERINVLEPLSQPEPYRQRFTRQEADEVDWSTF---ATFYAFAEAVPHADPVA----VEAHPAPRRHRARRPRITFPRDITKWN-------ESKKDK------------------------------------FYAYPQTYQGTNEFHVDWSSGPDRYMISQDGLPRMGWKRQFQFYAYGASKYHVLE 161
BLAST of mRNA_H-canaliculatus_F_contig10168.195.1 vs. uniprot
Match: A0A7S3K3X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3X8_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 7.080e-11 Identity = 63/189 (33.33%), Postives = 83/189 (43.92%), Query Frame = 2 Query: 743 LERWDVLKA-RHPYREHFATGEAWRLEHPEFEPKLCFYAFDTAVEHVEARPQRYWVEEAEAPFRCRLQKNRQKFS--RDMSKWEARAPVKRQTKKNCGESGEPKPGQKLPGDERFSSDSGAGDDLGEGGDGTGFFAFPLVVHNSHAHHVDWTSGPDRYQITQSAE--PEWGWSRLFTFFAYAASKYHVL 1294
L R ++ K+ R PYRE F W ++ L Y F +E +RY +E AE P R RL+ + Q+ RD ++W+A SG D F+AFP N+ VDWTSGPDRY+I + E PE GW R F FFAY A+KYH+L
Sbjct: 48 LIRLNIQKSSRPPYRERFC----WNDADDRWQASLYLYVFPHLPPGLEQCLRRYVLERAENPIRSRLRWDGQQKPQRRDATEWKALR-------------------------------SGRND----------FWAFPERTANAQELAVDWTSGPDRYRIIRHPESRPEAGWLRCFRFFAYPATKYHIL 191
BLAST of mRNA_H-canaliculatus_F_contig10168.195.1 vs. uniprot
Match: A0A7S4E3X4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3X4_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.120e-7 Identity = 57/182 (31.32%), Postives = 73/182 (40.11%), Query Frame = 2 Query: 776 PYREHFATGEAWRLEHPEFEPKLCFYAFDTAVEHVEAR--PQRYWVEEAEAPFRCRLQKNRQKFSRDMSKWEARA-PVKRQTKKN-CGESGEPKPGQKLPGDERFSSDSGAGDDLGEGGDGTGFFAFPLVVHNSHAHHVDWTSGPDRYQITQSAEPEWGWSRLFTFFAYAASKYHVLETTEP 1309
PYR + EA + + P L Y F E A+ +RY ++ AE P R RL +WE A P R T+ + C GE F S FFA P H+DWTS PDRY ++ P W R F FFAY A+K+H+LE P
Sbjct: 187 PYRHRISIEEADDV----WAPHLYLYVFPEHPEGSVAKGIARRYVLDRAEEPHRSRL------------RWERDAKPQTRDTEPSWCAPRGE------------FKS----------------FFALPEPQPGLSEFHIDWTSAPDRYMVSTEYRPAAAWLRCFRFFAYKATKFHLLERVWP 324 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10168.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10168.195.1 >prot_H-canaliculatus_F_contig10168.195.1 ID=prot_H-canaliculatus_F_contig10168.195.1|Name=mRNA_H-canaliculatus_F_contig10168.195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=371bp MIEKSHAPCFSRTQPSPRRRIKQETAWELPLSVRESAASPAADVPASSELback to top mRNA from alignment at H-canaliculatus_F_contig10168:1187..4205- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10168.195.1 ID=mRNA_H-canaliculatus_F_contig10168.195.1|Name=mRNA_H-canaliculatus_F_contig10168.195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3019bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10168:1187..4205- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10168:1187..4205- >mRNA_H-canaliculatus_F_contig10168.195.1 ID=mRNA_H-canaliculatus_F_contig10168.195.1|Name=mRNA_H-canaliculatus_F_contig10168.195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2226bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10168:1187..4205- (Hapterophycus canaliculatus Oshoro5f female)back to top |