mRNA_H-canaliculatus_F_contig10168.194.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: D8LKG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG0_ECTSI) HSP 1 Score: 196 bits (498), Expect = 4.400e-59 Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 1 Query: 1 VVKGNHLTPEHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGMEASCRWEARHTFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK 291
+VKGN LTPE GWKCVLAFFAF++ VPGSNRY++EEKDEPHLRTRIGMEASCRW+ARH+FAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK
Sbjct: 314 IVKGNFLTPEPGWKCVLAFFAFNDMVPGSNRYYIEEKDEPHLRTRIGMEASCRWDARHSFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISLK 410
BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: A0A836CAN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN8_9STRA) HSP 1 Score: 110 bits (276), Expect = 7.360e-29 Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1 Query: 1 VVKGNHLTPEHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGMEASCRWEARHTFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRISL 288
+VKG H+ PE W+C AFFAFD VPGS + FV+ + EPH+R+R+ + S RWE + F +P+P + +VHYT+RS +SL+ +PEQ RI L
Sbjct: 49 IVKGTHIKPERDWRCCFAFFAFDGPVPGSTQLFVQMRGEPHIRSRVALTHSERWEDHLSMYVFCMPMPNTAQFNVHYTVRSAESLDAFPEQDRIHL 144
BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: A0A7S2S6V9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6V9_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 9.530e-11 Identity = 31/94 (32.98%), Postives = 45/94 (47.87%), Query Frame = 1 Query: 7 KGNHLTPEHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGMEASC--RWEARHTFAAFDVPVPGSCALDVHYTIRSTDSLNPYPEQCRI 282
KGN + GW+C+ AF+AFDN PG++RY+ + K +P+ R+G E + WE V Y + DS PEQ R+
Sbjct: 338 KGNFCPCDQGWRCIFAFYAFDNPGPGTSRYYCQHKVDPYYTIRVGKEPTYIHDWEDYAXXXXXXXXXXXXXXFSVDYVTQDVDSRTDTPEQSRV 431
BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: A0A7S2AWR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AWR6_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.640e-10 Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 Query: 28 EHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGME 147
E GW+C+ AF+AFD +PG+ RY+V+E+ EPH R R+G E
Sbjct: 3 EEGWRCLFAFYAFDEMIPGTTRYYVQEQFEPHQRIRVGQE 42
BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Match: A0A7S3K3X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3X8_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.220e-7 Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 1 Query: 1 VVKGNHLTP-EHGWKCVLAFFAFDNDVPGSNRYFVEE--KDEPHLRTRIGME-ASCR-WEARHTFAAF--DVPVPGSCALDVHYTIR 240
++ G HL P + W+C AFFA D PG+N+YF+++ + E + R RIGM A C W+ F + D+P P + +V Y +R
Sbjct: 207 IISG-HLCPVQRPWRCAFAFFALDEQAPGTNKYFIQKTPQSEYYPRIRIGMTPAQCGGWDPHDQFIFYAPDMPWPCTAKFNVQYKMR 292 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10168.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10168.194.1 >prot_H-canaliculatus_F_contig10168.194.1 ID=prot_H-canaliculatus_F_contig10168.194.1|Name=mRNA_H-canaliculatus_F_contig10168.194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp VVKGNHLTPEHGWKCVLAFFAFDNDVPGSNRYFVEEKDEPHLRTRIGMEAback to top mRNA from alignment at H-canaliculatus_F_contig10168:192..951- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10168.194.1 ID=mRNA_H-canaliculatus_F_contig10168.194.1|Name=mRNA_H-canaliculatus_F_contig10168.194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=760bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10168:192..951- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10168:192..951- >mRNA_H-canaliculatus_F_contig10168.194.1 ID=mRNA_H-canaliculatus_F_contig10168.194.1|Name=mRNA_H-canaliculatus_F_contig10168.194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10168:192..951- (Hapterophycus canaliculatus Oshoro5f female)back to top |