mRNA_H-canaliculatus_F_contig10162.188.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10162.188.1
Unique NamemRNA_H-canaliculatus_F_contig10162.188.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10162.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10162contigH-canaliculatus_F_contig10162:4077..4580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10162.188.1prot_H-canaliculatus_F_contig10162.188.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10162 4112..4441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928645.7072692-UTR-H-canaliculatus_F_contig10162:4076..41111622928645.7072692-UTR-H-canaliculatus_F_contig10162:4076..4111Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10162 4077..4111 +
1696845511.1456802-UTR-H-canaliculatus_F_contig10162:4076..41111696845511.1456802-UTR-H-canaliculatus_F_contig10162:4076..4111Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10162 4077..4111 +
1622928645.728138-UTR-H-canaliculatus_F_contig10162:4441..45801622928645.728138-UTR-H-canaliculatus_F_contig10162:4441..4580Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10162 4442..4580 +
1696845511.1683664-UTR-H-canaliculatus_F_contig10162:4441..45801696845511.1683664-UTR-H-canaliculatus_F_contig10162:4441..4580Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10162 4442..4580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928645.7179785-CDS-H-canaliculatus_F_contig10162:4111..44411622928645.7179785-CDS-H-canaliculatus_F_contig10162:4111..4441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10162 4112..4441 +
1696845511.1575422-CDS-H-canaliculatus_F_contig10162:4111..44411696845511.1575422-CDS-H-canaliculatus_F_contig10162:4111..4441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10162 4112..4441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10162.188.1

>prot_H-canaliculatus_F_contig10162.188.1 ID=prot_H-canaliculatus_F_contig10162.188.1|Name=mRNA_H-canaliculatus_F_contig10162.188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
MAPRKLFCFCPLSSFSFNNFEMVIVFFGPLPIRSYLSSSTLQALRLEHRC
ALRNVGHHCFSPFCHACLFTSFFGVHPCRFGSRMRCYAKSCICTSLQHIQ
KPVRHSSLS*
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mRNA from alignment at H-canaliculatus_F_contig10162:4077..4580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10162.188.1 ID=mRNA_H-canaliculatus_F_contig10162.188.1|Name=mRNA_H-canaliculatus_F_contig10162.188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=504bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10162:4077..4580+ (Hapterophycus canaliculatus Oshoro5f female)
GAATACTGGCCGTGACTTGTGGCCCCTGCCATTCGATGGCACCTCGGAAA
CTGTTTTGCTTTTGTCCTCTTTCGTCTTTCTCATTTAACAACTTCGAGAT
GGTTATTGTTTTCTTCGGTCCTTTACCTATCCGCAGTTACCTTTCCTCAA
GTACACTTCAAGCTCTCCGGCTAGAACATCGGTGTGCTTTGCGTAACGTT
GGACATCATTGCTTTTCCCCATTTTGCCATGCGTGCCTTTTTACTTCCTT
TTTTGGTGTTCACCCTTGCCGATTTGGATCCAGGATGCGATGCTACGCAA
AATCGTGCATCTGCACATCCCTCCAACACATCCAGAAACCTGTCCGCCAT
TCTAGCTTATCGTAGCTTTTCCTTCTTCGCGGACGTTTTTCTTATGCCTT
CCACCCTGACTCCTCTCTTGGTTTCGCACTCACGGCGAAATAAAACGATG
CTCCGTAGTCATACGCGTGGTTGCTGTGAAAGAATCTGCAGCTACACACT
CCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10162:4077..4580+

>mRNA_H-canaliculatus_F_contig10162.188.1 ID=mRNA_H-canaliculatus_F_contig10162.188.1|Name=mRNA_H-canaliculatus_F_contig10162.188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10162:4077..4580+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACCTCGGAAACTGTTTTGCTTTTGTCCTCTTTCGTCTTTCTCATT
TAACAACTTCGAGATGGTTATTGTTTTCTTCGGTCCTTTACCTATCCGCA
GTTACCTTTCCTCAAGTACACTTCAAGCTCTCCGGCTAGAACATCGGTGT
GCTTTGCGTAACGTTGGACATCATTGCTTTTCCCCATTTTGCCATGCGTG
CCTTTTTACTTCCTTTTTTGGTGTTCACCCTTGCCGATTTGGATCCAGGA
TGCGATGCTACGCAAAATCGTGCATCTGCACATCCCTCCAACACATCCAG
AAACCTGTCCGCCATTCTAGCTTATCGTAGATGGCACCTCGGAAACTGTT
TTGCTTTTGTCCTCTTTCGTCTTTCTCATTTAACAACTTCGAGATGGTTA
TTGTTTTCTTCGGTCCTTTACCTATCCGCAGTTACCTTTCCTCAAGTACA
CTTCAAGCTCTCCGGCTAGAACATCGGTGTGCTTTGCGTAACGTTGGACA
TCATTGCTTTTCCCCATTTTGCCATGCGTGCCTTTTTACTTCCTTTTTTG
GTGTTCACCCTTGCCGATTTGGATCCAGGATGCGATGCTACGCAAAATCG
TGCATCTGCACATCCCTCCAACACATCCAGAAACCTGTCCGCCATTCTAG
CTTATCGTAG
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