mRNA_H-canaliculatus_F_contig1016.184.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1016.184.1
Unique NamemRNA_H-canaliculatus_F_contig1016.184.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 4.770e-59
Identity = 338/474 (71.31%), Postives = 353/474 (74.47%), Query Frame = 1
Query:  187 ALAASLEDLPASALHPVLHAFLLECGLSTTAAALREETGKSSKKLAKARTSLGAGCQDLLEIVNAHRRRHAVAAAD---NEVEEDVEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKLLTPSKDVDAAASNGVANG-GMKTPVKGGDSGDKANGDS------TGKKSTG-KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 1575
            A AA++EDLPASALHP++H+FLLECGLS TAAALREETGKSSKKL K + +LG GC+DLLEIVNAHR+R A  AA    ++V+ED+EH     XXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                   WVPK LTP+K      SNGVANG GMKTP KGG                TGKKSTG KSRTQGEAFKRVQD+QWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:    5 AAAAAVEDLPASALHPLVHSFLLECGLSATAAALREETGKSSKKLGKQQAALGGGCKDLLEIVNAHRKRLAAEAAKAGGDDVQEDMEHTKKESXXXXXXXXKGKANGVKPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------WVPKALTPNKAGXXGDSNGVANGDGMKTPAKGGXXXXXXXXXXXXXXXXTGKKSTGGKSRTQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 411          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 2.180e-51
Identity = 114/144 (79.17%), Postives = 117/144 (81.25%), Query Frame = 1
Query: 1168 AWVPKLLTPSKDVDAAASNGVANG-GMKTPVKGGDSGDKANGDST------GKKSTG-KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 1575
            AWVPK LTP+K      SNGVANG GMKTP KGG                 GKKSTG KSR+QGEAFKRVQD+QWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct:  378 AWVPKDLTPNK-AGGGVSNGVANGDGMKTPAKGGQGXXXXXXXXXXXXXXXGKKSTGGKSRSQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 520          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 105 bits (263), Expect = 9.040e-22
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 1303 KKSTGKSRTQGEAFKRVQDDQWVGGLKK-GFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1572
            KK+    R QGEAFKRV  D W   +K     DN+YEGTFG  GYG KASE L KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD
Sbjct:  151 KKTPRSERVQGEAFKRVCSDTWGSAIKHDALKDNSYEGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD 241          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A150FVM7_GONPE (SRP40_C domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FVM7_GONPE)

HSP 1 Score: 105 bits (263), Expect = 1.390e-20
Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 1
Query: 1264 GDSGDKANGDSTGKKSTGKSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 1572
            G+ G  ANG  +GK   GK  T  +AF+RV+ ++W+G  KKG  DN+YEGTFGQGG+GFKA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:  294 GEXGKTANGKQSGK--NGKPTTAAKAFQRVKAEEWLG--KKGAIDNSYEGTFGQGGWGFKAQQVLGAVRGKDFRHEKTKKKRGSYRGGAIDPHATFSTKFESDD 393          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.670e-20
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1324 RTQGEAFKRVQDDQWVGGLKKG-FDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 1563
            R  GEAF+RV D+ W   +K     DN+Y GTFG GGYG KASEKL  VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct:  391 RVSGEAFRRVDDEYWGQQIKDDRLKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.990e-20
Identity = 67/133 (50.38%), Postives = 76/133 (57.14%), Query Frame = 1
Query: 1168 AWVPKLLTPSKDVDAAASNGVANGGMKTPVKGGDSGDKANGDSTGKKSTGKSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 1566
            AW P   TP     AAA+        KTP   G SG                   GEAF+RV+D++WV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  418 AWTPSAKTPEVKQPAAAA--------KTP---GSSG-------------------GEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 5.720e-20
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 1327 TQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1572
            T  +AF+RV++++W+G  KKG  DN+Y GTFG  G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+  D
Sbjct:  201 TAXKAFQRVREEEWIG--KKGSWDNSYTGTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A8JCQ6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JCQ6_CHLRE)

HSP 1 Score: 96.3 bits (238), Expect = 6.420e-20
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 1327 TQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 1572
            T G+AF+RV+ ++W+G  KKG  DN YE TFGQ G+G+KA + L  VRGKDFRHEKTKKKRGSYRGG I  ++ +S KF+  D
Sbjct:   34 TAGKAFQRVKAEEWLG--KKGAIDNRYEATFGQAGWGYKAQQVLGAVRGKDFRHEKTKKKRGSYRGGNIDPHATFSTKFESDD 114          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 3.040e-19
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 1327 TQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI-SMNSYSVKFDDSD 1572
            T  +AF+RV++++W+G  KKG  DN+Y GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRG+Y+GG+I +M S S+KF+  D
Sbjct:  208 TAAKAFQRVKEEEWLG--KKGAWDNSYVGTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFESDD 288          
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 101 bits (251), Expect = 4.030e-19
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 1261 GGDSGDKANGDSTGKKSTGKSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1572
            GG   DK  G+ST K           AF+RV+ ++W+G  KKG  DN+YEGTFGQ G+GFKA + L  VRGKDFRHEKTKKKRG+YRGG I  +S+S KFD  D
Sbjct:  290 GGSDSDKKKGNSTFK-----------AFQRVKAEEWLG--KKGAWDNSYEGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFDSDD 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH06_ECTSI4.770e-5971.31LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE2.180e-5179.17LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3Y1Y8_HETAK9.040e-2263.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A150FVM7_GONPE1.390e-2058.65SRP40_C domain-containing protein n=1 Tax=Gonium p... [more]
A0A4D9D037_9STRA4.670e-2066.67SRP40_C domain-containing protein n=1 Tax=Nannochl... [more]
A0A836CH62_9STRA4.990e-2050.38SRP40, C-terminal domain-containing protein n=1 Ta... [more]
A0A061RD47_9CHLO5.720e-2062.20SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A8JCQ6_CHLRE6.420e-2060.24Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A7S1T5X8_9CHLO3.040e-1961.45Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3QVY0_DUNTE4.030e-1956.73Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1016contigH-canaliculatus_F_contig1016:6604..13635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.6
Seed ortholog evalue9.9e-56
Seed eggNOG ortholog2880.D7FH06
Preferred nameSRP40
KEGG koko:K10771,ko:K11294
KEGG Pathwayko03410,ko05130,map03410,map05130
KEGG ModuleM00296
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
EggNOG free text desc.RNA polymerase I core binding
EggNOG OGsKOG2992@1,KOG2992@2759
EC4.2.99.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSRP40, C-terminal
Ec32 orthologEc-26_003010.1
Exons8
Model size2810
Cds size1395
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1016.184.1prot_H-canaliculatus_F_contig1016.184.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1016 6787..12403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928645.1699936-UTR-H-canaliculatus_F_contig1016:6603..67861622928645.1699936-UTR-H-canaliculatus_F_contig1016:6603..6786Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1016 6604..6786 +
1696845510.8512044-UTR-H-canaliculatus_F_contig1016:6603..67861696845510.8512044-UTR-H-canaliculatus_F_contig1016:6603..6786Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1016 6604..6786 +
1622928645.3220947-UTR-H-canaliculatus_F_contig1016:12403..136351622928645.3220947-UTR-H-canaliculatus_F_contig1016:12403..13635Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1016 12404..13635 +
1696845510.9539616-UTR-H-canaliculatus_F_contig1016:12403..136351696845510.9539616-UTR-H-canaliculatus_F_contig1016:12403..13635Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1016 12404..13635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928645.1968627-CDS-H-canaliculatus_F_contig1016:6786..68581622928645.1968627-CDS-H-canaliculatus_F_contig1016:6786..6858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 6787..6858 +
1696845510.8687778-CDS-H-canaliculatus_F_contig1016:6786..68581696845510.8687778-CDS-H-canaliculatus_F_contig1016:6786..6858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 6787..6858 +
1622928645.2105532-CDS-H-canaliculatus_F_contig1016:7777..78551622928645.2105532-CDS-H-canaliculatus_F_contig1016:7777..7855Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 7778..7855 +
1696845510.8781075-CDS-H-canaliculatus_F_contig1016:7777..78551696845510.8781075-CDS-H-canaliculatus_F_contig1016:7777..7855Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 7778..7855 +
1622928645.2253788-CDS-H-canaliculatus_F_contig1016:8533..89171622928645.2253788-CDS-H-canaliculatus_F_contig1016:8533..8917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 8534..8917 +
1696845510.8891547-CDS-H-canaliculatus_F_contig1016:8533..89171696845510.8891547-CDS-H-canaliculatus_F_contig1016:8533..8917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 8534..8917 +
1622928645.239848-CDS-H-canaliculatus_F_contig1016:9037..92621622928645.239848-CDS-H-canaliculatus_F_contig1016:9037..9262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 9038..9262 +
1696845510.8994598-CDS-H-canaliculatus_F_contig1016:9037..92621696845510.8994598-CDS-H-canaliculatus_F_contig1016:9037..9262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 9038..9262 +
1622928645.2562127-CDS-H-canaliculatus_F_contig1016:9785..99381622928645.2562127-CDS-H-canaliculatus_F_contig1016:9785..9938Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 9786..9938 +
1696845510.9089844-CDS-H-canaliculatus_F_contig1016:9785..99381696845510.9089844-CDS-H-canaliculatus_F_contig1016:9785..9938Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 9786..9938 +
1622928645.2789562-CDS-H-canaliculatus_F_contig1016:10348..105151622928645.2789562-CDS-H-canaliculatus_F_contig1016:10348..10515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 10349..10515 +
1696845510.9255903-CDS-H-canaliculatus_F_contig1016:10348..105151696845510.9255903-CDS-H-canaliculatus_F_contig1016:10348..10515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 10349..10515 +
1622928645.2923043-CDS-H-canaliculatus_F_contig1016:11320..114681622928645.2923043-CDS-H-canaliculatus_F_contig1016:11320..11468Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 11321..11468 +
1696845510.9352596-CDS-H-canaliculatus_F_contig1016:11320..114681696845510.9352596-CDS-H-canaliculatus_F_contig1016:11320..11468Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 11321..11468 +
1622928645.3076682-CDS-H-canaliculatus_F_contig1016:12235..124031622928645.3076682-CDS-H-canaliculatus_F_contig1016:12235..12403Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 12236..12403 +
1696845510.9457262-CDS-H-canaliculatus_F_contig1016:12235..124031696845510.9457262-CDS-H-canaliculatus_F_contig1016:12235..12403Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1016 12236..12403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1016.184.1

>prot_H-canaliculatus_F_contig1016.184.1 ID=prot_H-canaliculatus_F_contig1016.184.1|Name=mRNA_H-canaliculatus_F_contig1016.184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=465bp
MALAASLEDLPASALHPVLHAFLLECGLSTTAAALREETGKSSKKLAKAR
TSLGAGCQDLLEIVNAHRRRHAVAAADNEVEEDVEHAKKVKKAKAAAAAA
AAVVASSSSSSSSSSSSSSSSSSSSSSSSEEEDSDDDKSEEEEEEEEEEE
KPEANVKTSKKSKKAAAAAAEAAEAAAAAESSSDEESEESSDGEEEEVKE
GEKQEENRPKKRKAAAVEADSSSDQDDSDSDEEEEEEEEEDEAKKPPAKK
KKKVEPAAAAAATAAASDSDSSSSSSSSSSSDSSSDSDSSDDSSSSDDET
DEEQEAKRAVVKASAEKERRRSSAAAAAAWVPKLLTPSKDVDAAASNGVA
NGGMKTPVKGGDSGDKANGDSTGKKSTGKSRTQGEAFKRVQDDQWVGGLK
KGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI
SMNSYSVKFDDSDG*
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mRNA from alignment at H-canaliculatus_F_contig1016:6604..13635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1016.184.1 ID=mRNA_H-canaliculatus_F_contig1016.184.1|Name=mRNA_H-canaliculatus_F_contig1016.184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7032bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1016:6604..13635+ (Hapterophycus canaliculatus Oshoro5f female)
ATTGAATCAGCGAAAACACACCCCACACTTGACATCCGACACACGGGTCA AGGAGGAGGAGATAAAGGGGGAGAGAGGACGACCGTGGTTAATTTCGTCA TCCACACGTACCACGGAGCAGCAGTAGTTCACCCAGCAATCTACCCGGAG TCGACTGGCCCTGCAGCTAAGTCTCGTGTGGCCATGGCTCTCGCAGCATC GTTAGAGGATCTCCCAGCCAGTGCCTTGCACCCTGTTCTCCACGCCTTCC TCTTGGTAAGACATTAACTCTTATTATGCGGGCGAAGCGATGATCCCTAG ATATTTGTTGGTTGGGCAGTAGCACCGTTGATTCCCAAGGTCTGTCGGAT TCCTAGCCGCGCAGTCCCAGTCGTCGAAACTAGGAAACCATCTCCGATCA CCGCCTGTGGTTCGTTCGTACCAGCACCTTCCCTTCTTCAGGCTTTTCCC TTTCTCCTTGCTCTACGGGTGGCTGCCTAGCTCCCTTTCAAAGCTCAACG CGATACCATGCCCAGATGGTGAAGGAGAACCTAACTTGTCACTTTCTTTG TGTCTGCTGAGGCGGGTTGTTCACCCCGGGTGCGCGAATCCAAGCTCGCC AATCCCCGAAAGCGGCGCTTGGCTTCCATGATGGATGCTTTTCATTCAGC ACGTTTGGAATACACCTGCCAGAAAGGGAAACTTGACATACTTCACACAG AGCCGTGGTGGTTCAGATGTACGCCGGGGTCAGGCTAGAAATTGTGCTGG CGCGGAAGTGGCCCTCCGCGGAGAAGTATCGCGACGTTGTAACAATTCCC GCAGGAGACGTTGCAGCTGGTCCTAGTGGTCTCACTTTCGCTCTTCCTTG CCCGGCATGTCATGGTGCCATCCAGGTGGCAGTCGTAAGCGCTCGTTGTC TAAACATTGCGTGGTAGAGACCCAAAGGGATGTGCAAGATGTCATACTCC TAGCCATTTTCGCGTGGTATCGTTGCGGGAAGCAGGAACCGAACAGAGGA TGGTGCCCATGATCATCTCCAGGATGAATCCTCCATCGGCAAGGTGGAGG TGGGGTAGGAACGACAACCCCTGAAGCTTGCTTTGAATTGATCTCTACCA CCATGAGGGCCGCGTGCGACCCTTACGAAGCGAACTTGACCCTTCTGCCT CCTTCTCCTCGCGCCTTCGGCCAGGAGTGTGGGCTTTCGACCACCGCGGC AGCCTTGCGGGAGGAGACGGGCAAGAGCTCGAAGAAGCTCGCGAAAGCAA GGGTGCGTATTCGGTTGGATCGCTGGGTACCTGGGTGCTCGTTCAATGCA CAAGTCATGATTCGCCAAGCGTGCCTCGCCAGCCAGCTGGCCGAATGCAT CGAGCGTCACGTGTATATGGCAAGGGGCATCATACGCGTGTTTCATCTCG ACGAGTAGTGGTTGTACTCCTCTGGTCTCTCACAGTTGAAAACCTCCATA CGCGTGTGACCGGGAGTGAGAATGACAGATACCGCAACGCTCGAGAGGGG TCCACCTCCGCCACTCAAAGATGGGGTAGCAATACACACACGAACACACA CGCTCTCGTTTTGTGGGAAGTATTTACGGTACAACAGCGACGGCCCTCAC TTAAACCGCGCCGGAGTTGCTCGTGAAGGCCAGATCGGTCCTGGTTTTGC GCTGCCGCATATGTCTTTCCCCGCGGTTTTGATACGGTCAGGGCATACGG TCATGCTTCTCGCACCATTTGTTGCCTCTGGGAACTCCCGACAGCAAGAT TGCGGAACGTCCCCCGCTGCTCCGCGTACCACTGTCGACTGATCGTGAGT GAGTACATCCACAATGTCAAAAATCCGTTTGCCTTCCGAGGGATCCTGAA TCTTTCTTGTCCGACTGTGTGCACGCGTCCTGCTTTGCGATGCGGGTGAC GCACCCCCGTGCGACCTACCGCATATGTAGACGTCCCTGGGGGCGGGCTG CCAAGATTTGCTGGAGATTGTGAACGCCCACCGCAGACGCCACGCGGTAG CCGCGGCGGACAACGAGGTAGAAGAGGACGTTGAACACGCCAAGAAGGTC AAGAAAGCCAAGGCGGCTGCAGCTGCGGCGGCAGCAGTGGTAGCCTCATC AAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCGAAGAAGAGGACAGCGACGACGACAAAAGTGAG GAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAACCGGAGGCCAATGTAAA GACTAGCAAAAAGTCCAAAAAGGCGGCAGCGGCGGCGGCAGAGGCGGCAG AGGCGGCGGCGGCTGTTGCGGCCGAAGCCAGCAGCGACGACGAAAGCAGC AGCAGCAGCGGGGAGGACGAAATCGAAGAGGGTAAGGCGCAGGCGAACGG CAAGAAGCCCAAGAAGGTTGCGGCGGCAGTGGAGGCCGAATCCAGCAGCG ACGAGGAAAGCGAGGAGTCGAGCGATGGAGAAGAGGAGGAGGTGAAGGAA GGAGAGAAACAGGAAGAGAATCGGCCCAAAAAGAGGAAGGCGGCTGCTGT CGAGGCGGACTCTTCTTCGGACCAGGACGACAGCGATAGCGACGAGGAGG AGGAGGAGGAGGAGGAGGAGGATGAAGCGAAAAAGCCCCCGGCCAAAAAG AAAAAGAAGGTGCCGCATCGAACTACGGGTCTGCTTGGGCGGTCCATGTT GAAGAAGTAGAAAACCCTGCGAACCCTAGCTTAGTGGCCACCTGCGATAT ATGAGCGTTTGCGCACGTTTATGGTCGGTGTTGTGGTCGGTGTCGTCTAT CGTGCTTTGCCCTCGTTGTTGTTGCTGTCTTGCAACAACTCGGTACCAGC CCTTAGCTCCTCTTTTCGTCTTCACGTCAAGAGCGTCAATGGTCGGACGT GACTCTGATCGGAGAGCAACGGTGCTGTCTGAGGTGAATGTGCCCGAGAT ATCCCCAGAAAAGCATGCTGCACGAGACATCGCCCGAACCCTAGCACGGC CCCCTCGAGGCTGCTGTTGGTCCGAATAGAACAGCGGAATTCGCGATAAA CGCTCCCTCTTCTTGCTCTTTTGTCTCTACCTGTGCGCATCTCGCTGTCG TGTTTCGTTTCTCAATTATCTTCTGAACCTCAACACTTGTACTTACGTGA TGACCGTACGGGTTGGGGTGCAGGTAGAGCAGGTAGAGCCTGCTGCCGCC GCCGCCGCCACCGCCGCCGCTAGCGATAGCGATAGCAGCAGCAGCAGCAG CAGCAGCAGCAGTAGCGACAGCAGCAGCGACAGCGATAGCAGCGACGATT CTTCTTCCTCGGACGACGAGACGGACGAAGAACAGGTGGGCATCCACGCC TCAACTACTGGTCTTTTGCCGTTGCCCGTCTTGCTTTCCGGCTTACTTTT TGTTGTTTTGCCTTCCTTTTTTTCCGTGTTGATTTGTCTTCAGTCGTTCG TTCTCTCGTCCTGCCTTTTTTTTTTCATGTGTGAAAGTTAAACATGCAGA GTATGACGATCGAGAAACGTCATGATTGTGTTTTTTCATGTGTGAAAGTT AAACATGCAGAGTATGACGATCGAGAAACGTCATGATTGTTCAGTAACGT GACTCACGCGTACGCTACACTACTGTCGCTGCCTCGTCTTTTGTCGGCAG TTCCAGCTCAGTCTTTCTCATGTCCCGCTGCGTCGGGTTACAAAGACTCC GCTCGAGTGTCTGATGTTTTGTTGTTTGTGCTCGTTTTATTCCAGGAGGC GAAAAGGGCGGTTGTCAAGGCCTCGGCGGAGAAGGAGCGAAGGAGATCCT CGGCGGCCGCAGCTGCCGCCTGGGTACCAAAGCTCCTCACGCCCAGCAAG GACGTCGACGCCGCGGCATCCAACGGCGTGGCGAACGGCGGGATGAAGAC GCCAGTGAAAGGGTGAATCGAGTGACATGTCTTTTCAAAACACCCACGAG AACGTCCTGTTGCACAACGTGTCTGCATAACGTCTTCCGCTCTTACGTAT ATGCCCAGTACACTGTCCAGAAGACGACTTAGGGATGATGTGAATGTCTT GAGATGCAGGCGCGGCTGAAGATTAGCGAGCGATACCTGAGACGCAATAT GTATTGTGTCTTTTTTTTATCGTTGCACCGGGTTGAAAAATGTCAGGTTG TCTATCACGTTCGATATGCGAAATGTGCTTACCGGGGCACGCTACAAGCA AAGATGAGGAATCGGATGGCGACGGCCGGCGCTCCGTATGAATTGATCTG GACGCTACGACCATGGTAGATTCAAAAATCGCCTCATGATGCCTGGCAAG TGGAGAAACATCAACGCTCGACGCACAATTCGCAGCTTTATCACCCGGTC CGGTGCTTTCACTCTGTCAAAAACAGCAGTTGCAAGCAGGCGAGAGAGGA CACAAACGTACGTCCAGGAATCGGAAGCCCTGTGCTTTTGCGCATCTCTG TTGACCTTCATTGTTACTAGCCACGTTTCGAGCTGCCCACGGTAACGCAT TTTCAGTACACGAAACGGTACGGTTTGACATTTTCTTGTGAACCAAAAAA AGAAGTAAGTGATATCCGCATCATTGGGAGCGTGCATTCTTCCCATCCAC TCTTCCTTACAGAGTGCCGAAATGGACGCCGGTCTGCGTATCGCCCGAAG CGGCGATTTGCCGTACGAGAGATGAAAACAAAACGAAAAACTGAAAAAAA AAACGGAAAAAATACAGGGGGGATTCGGGAGACAAGGCTAACGGTGACAG CACCGGCAAAAAATCGACGGGCAAGTCGAGGACGCAGGGGGAAGCCTTCA AAAGGGTGCAGGACGACCAGTGGGTGGGGGGCCTCAAGAAGGGGTTCGAC GACAACACGTATGAGGTGCGTATTGGTGTGTGTGTGGGTTGAAATTCTTG AGCGTTTAGTGGGGTGCATGCTTGTCTGTCTTTCATACTATGTCGGCGGC CCTCGATGGCTGCTGTCTGAAATTATGTCAGCCTGAATCGGGCGACGAGA TTAGCACCGTTCTCAACTTGCGGCGCTCCTAGAGTACAAGAATGTGCTGC GTACTAAAGGTGTAAGATGAGTTCAAGTCCGGGTCTCATATTTTACTTGT GGAAGGCGGCGTGTCGGTGGTGCGAATCAGGCATGTGTGTGCATGGTATC GGATCTGAAAGCATGGTCAAATTTGGGCGAAAAGGAGGGCAACTGTCTTC CTGAATCGCAGGGTCAACCGACAGGGGGCTTGCTAAAAAGATTAAAAGCA TAAGCACAAGCCCAGGTGCCTCACAGGATCCCTTTGAATGAAAGCAATCG TCCCTTCACTGCCAACGCACCTCATCGGCGCACAGCACAAACGAGTGCGC CGGTGCATCTTCACCACGGTAGTCCCTGTCTTTCCCTCTCGTAGCTGCTA CCCCTGCCTGCCTTTGTCCGCTCTCGACCTAGCCTTGGCAGCGCTCTACA CGTCCTTGCTCTTGTCGCGCCGCTCAACCCCCCCCCCCGCCCCCCTCCCC GCACTCTGGAGTCGTACAAGTATCGTTCTGCCCCCCGATATCCTCGCCCA AATTTTGACCAAGTGTATGTCCTGCCATGTCCTGTGTGATGACTCCTAAA TACGGTCTCCGCGCATCTATTCTTTGAACCAGGGCACATTCGGACAGGGC GGGTACGGCTTCAAGGCCAGCGAGAAGCTCTCCAAGGTGCGAGGGAAGGA CTTCCGCCACGAGAAAACGAAGAAAAAGCGAGGCAGCTACAGGGGGGGGG AGATCTCGATGAACAGCTACTCGGTCAAGTTCGACGACAGCGACGGCTAA GGACGATGCTAGTGAATTGTGGCGGTGACAAAGACTACGATGATCGCAAT AGACATGTTGGAACGGATGGGCTGGTCGTGCGGCATTGCTACCAAGACTT CGCCTTGTTGCGCGTCGCCTGGGCGTGAGGGTGGGCAGGCGGATACCCTT CAAATGCCAGACGCCTCTGTAAAGTCGACTTTGGCAAGCGATATTTCCCA GCGGTCGAGCGTGGAGCCAGCTGGTGCGGGCCGATGTCGAACACGAACGT TGTCGCCGTACGGTGGCTGGGTTGTGAGCGATAGGCGATGCCTTGAAGAC CTGGTGTCACCCCTCTCTGAACGCGTTTGGGGAGGAATGTCCACGTTATT TTTGTGGGAACCACGCACCGATGATCTTTGGCGATGTTCCTTCTTCTGGA AGGGCTGTTTGCACGGCAGTTGTTGAAAAAGTGGTCAAATTGAGGTGGTC TCCGTCAAGGCTGTGTATCCCGTTCGTCATTATTTAGGTCTCCCGAGTGG GAGGGTGTGTGGCAAGGCCGGATTCTTTTCATGGCCATCACTGCGGCTTG GTGCGGGGATGGATGTGTGGCTTGCGATGTGCGGCTGAGGCGTGTCGACG AAGGGAAACCTTGATGTGGAGGAAGTCGAAGCTGGCAGCAGATGCTAAGG TGCCGTCACATTCCGTTGAGAGGGATTCCAGGGAGATCAGAATCAGTTCA TTGTAACAGGGTAAAAAGGCGAATTCGGGACTCAACAGATGTGGCAGGGC ATTTCGTATTCTTGCGCAGGATGATGAGCACACGTACGCTGCAGAGCGAT TGCGTTGAGTTTACATTCAAAAAAGACTGTCGGAGTGGAATATTTCGACC ACGTGCTACGCGACAACACGGCGTAAGCGGTAAAGCTTGCATACTTTTAA GTTTGATGTTGAATCTAGACTCCGACTCCCCATTATCCAAGTGTCGCGCT ATTGCGCGGATTTGTCGCCGGCGTACGTAGCAACAGCTATTCAGCTGCCC TTCCATTGGGTGCGTTCTGTACGGGAATCTTGGTACATGGGCAGCGGGTG AGGACAAGATCGCCCCCATCCCCCTCTGTGTTCACTTCTTGTATGTGTTC CTGTGAACTCGAAACGTGAAGATCCGAGGCGTCGCGATCGTGGATTAAAC CTGTGGAGCATAGCCTGTGGTCAAGCGTCCAAATTAAGGGTAAAATTGAG CCATGAGCTTCGTGCCCTCGCCTCATTCGCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1016:6604..13635+

>mRNA_H-canaliculatus_F_contig1016.184.1 ID=mRNA_H-canaliculatus_F_contig1016.184.1|Name=mRNA_H-canaliculatus_F_contig1016.184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2790bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1016:6604..13635+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTCTCGCAGCATCGTTAGAGGATCTCCCAGCCAGTGCCTTGCACCC
TGTTCTCCACGCCTTCCTCTTGATGGCTCTCGCAGCATCGTTAGAGGATC
TCCCAGCCAGTGCCTTGCACCCTGTTCTCCACGCCTTCCTCTTGGAGTGT
GGGCTTTCGACCACCGCGGCAGCCTTGCGGGAGGAGACGGGCAAGAGCTC
GAAGAAGCTCGCGAAAGCAAGGGAGTGTGGGCTTTCGACCACCGCGGCAG
CCTTGCGGGAGGAGACGGGCAAGAGCTCGAAGAAGCTCGCGAAAGCAAGG
ACGTCCCTGGGGGCGGGCTGCCAAGATTTGCTGGAGATTGTGAACGCCCA
CCGCAGACGCCACGCGGTAGCCGCGGCGGACAACGAGGTAGAAGAGGACG
TTGAACACGCCAAGAAGGTCAAGAAAGCCAAGGCGGCTGCAGCTGCGGCG
GCAGCAGTGGTAGCCTCATCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAAGAAGAGGACA
GCGACGACGACAAAAGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG
AAACCGGAGGCCAATGTAAAGACTAGCAAAAAGTCCAAAAAGGCGGCAGC
GGCGGCGGCAGAGGCGGCAGAGGCGGCGGCGGCTACGTCCCTGGGGGCGG
GCTGCCAAGATTTGCTGGAGATTGTGAACGCCCACCGCAGACGCCACGCG
GTAGCCGCGGCGGACAACGAGGTAGAAGAGGACGTTGAACACGCCAAGAA
GGTCAAGAAAGCCAAGGCGGCTGCAGCTGCGGCGGCAGCAGTGGTAGCCT
CATCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCGAAGAAGAGGACAGCGACGACGACAAAAG
TGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAACCGGAGGCCAATG
TAAAGACTAGCAAAAAGTCCAAAAAGGCGGCAGCGGCGGCGGCAGAGGCG
GCAGAGGCGGCGGCGGCTGCCGAATCCAGCAGCGACGAGGAAAGCGAGGA
GTCGAGCGATGGAGAAGAGGAGGAGGTGAAGGAAGGAGAGAAACAGGAAG
AGAATCGGCCCAAAAAGAGGAAGGCGGCTGCTGTCGAGGCGGACTCTTCT
TCGGACCAGGACGACAGCGATAGCGACGAGGAGGAGGAGGAGGAGGAGGA
GGAGGATGAAGCGAAAAAGCCCCCGGCCAAAAAGAAAAAGAAGGCCGAAT
CCAGCAGCGACGAGGAAAGCGAGGAGTCGAGCGATGGAGAAGAGGAGGAG
GTGAAGGAAGGAGAGAAACAGGAAGAGAATCGGCCCAAAAAGAGGAAGGC
GGCTGCTGTCGAGGCGGACTCTTCTTCGGACCAGGACGACAGCGATAGCG
ACGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGCGAAAAAGCCCCCG
GCCAAAAAGAAAAAGAAGGTAGAGCCTGCTGCCGCCGCCGCCGCCACCGC
CGCCGCTAGCGATAGCGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTA
GCGACAGCAGCAGCGACAGCGATAGCAGCGACGATTCTTCTTCCTCGGAC
GACGAGACGGACGAAGAACAGGTAGAGCCTGCTGCCGCCGCCGCCGCCAC
CGCCGCCGCTAGCGATAGCGATAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTAGCGACAGCAGCAGCGACAGCGATAGCAGCGACGATTCTTCTTCCTCG
GACGACGAGACGGACGAAGAACAGGAGGCGAAAAGGGCGGTTGTCAAGGC
CTCGGCGGAGAAGGAGCGAAGGAGATCCTCGGCGGCCGCAGCTGCCGCCT
GGGTACCAAAGCTCCTCACGCCCAGCAAGGACGTCGACGCCGCGGCATCC
AACGGCGTGGCGAACGGCGGGATGAAGACGCCAGTGAAAGGGAGGCGAAA
AGGGCGGTTGTCAAGGCCTCGGCGGAGAAGGAGCGAAGGAGATCCTCGGC
GGCCGCAGCTGCCGCCTGGGTACCAAAGCTCCTCACGCCCAGCAAGGACG
TCGACGCCGCGGCATCCAACGGCGTGGCGAACGGCGGGATGAAGACGCCA
GTGAAAGGGGGGGATTCGGGAGACAAGGCTAACGGTGACAGCACCGGCAA
AAAATCGACGGGCAAGTCGAGGACGCAGGGGGAAGCCTTCAAAAGGGTGC
AGGACGACCAGTGGGTGGGGGGCCTCAAGAAGGGGTTCGACGACAACACG
TATGAGGGGGGATTCGGGAGACAAGGCTAACGGTGACAGCACCGGCAAAA
AATCGACGGGCAAGTCGAGGACGCAGGGGGAAGCCTTCAAAAGGGTGCAG
GACGACCAGTGGGTGGGGGGCCTCAAGAAGGGGTTCGACGACAACACGTA
TGAGGGCACATTCGGACAGGGCGGGTACGGCTTCAAGGCCAGCGAGAAGC
TCTCCAAGGTGCGAGGGAAGGACTTCCGCCACGAGAAAACGAAGAAAAAG
CGAGGCAGCTACAGGGGGGGGGAGATCTCGATGAACAGCTACTCGGTCAA
GTTCGACGACAGCGACGGCTAAGGCACATTCGGACAGGGCGGGTACGGCT
TCAAGGCCAGCGAGAAGCTCTCCAAGGTGCGAGGGAAGGACTTCCGCCAC
GAGAAAACGAAGAAAAAGCGAGGCAGCTACAGGGGGGGGGAGATCTCGAT
GAACAGCTACTCGGTCAAGTTCGACGACAGCGACGGCTAA
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