|
Homology
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI) HSP 1 Score: 218 bits (554), Expect = 4.770e-59 Identity = 338/474 (71.31%), Postives = 353/474 (74.47%), Query Frame = 1
Query: 187 ALAASLEDLPASALHPVLHAFLLECGLSTTAAALREETGKSSKKLAKARTSLGAGCQDLLEIVNAHRRRHAVAAAD---NEVEEDVEHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVPKLLTPSKDVDAAASNGVANG-GMKTPVKGGDSGDKANGDS------TGKKSTG-KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 1575
A AA++EDLPASALHP++H+FLLECGLS TAAALREETGKSSKKL K + +LG GC+DLLEIVNAHR+R A AA ++V+ED+EH XXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WVPK LTP+K SNGVANG GMKTP KGG TGKKSTG KSRTQGEAFKRVQD+QWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct: 5 AAAAAVEDLPASALHPLVHSFLLECGLSATAAALREETGKSSKKLGKQQAALGGGCKDLLEIVNAHRKRLAAEAAKAGGDDVQEDMEHTKKESXXXXXXXXKGKANGVKPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------WVPKALTPNKAGXXGDSNGVANGDGMKTPAKGGXXXXXXXXXXXXXXXXTGKKSTGGKSRTQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 411
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE) HSP 1 Score: 199 bits (506), Expect = 2.180e-51 Identity = 114/144 (79.17%), Postives = 117/144 (81.25%), Query Frame = 1
Query: 1168 AWVPKLLTPSKDVDAAASNGVANG-GMKTPVKGGDSGDKANGDST------GKKSTG-KSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 1575
AWVPK LTP+K SNGVANG GMKTP KGG GKKSTG KSR+QGEAFKRVQD+QWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG
Sbjct: 378 AWVPKDLTPNK-AGGGVSNGVANGDGMKTPAKGGQGXXXXXXXXXXXXXXXGKKSTGGKSRSQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSDG 520
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK) HSP 1 Score: 105 bits (263), Expect = 9.040e-22 Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 1
Query: 1303 KKSTGKSRTQGEAFKRVQDDQWVGGLKK-GFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1572
KK+ R QGEAFKRV D W +K DN+YEGTFG GYG KASE L KVRGKDFRHEKTKKKRG+YRGG+I++ S S+KF +SD
Sbjct: 151 KKTPRSERVQGEAFKRVCSDTWGSAIKHDALKDNSYEGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKFANSD 241
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A150FVM7_GONPE (SRP40_C domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FVM7_GONPE) HSP 1 Score: 105 bits (263), Expect = 1.390e-20 Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 1
Query: 1264 GDSGDKANGDSTGKKSTGKSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 1572
G+ G ANG +GK GK T +AF+RV+ ++W+G KKG DN+YEGTFGQGG+GFKA + L VRGKDFRHEKTKKKRGSYRGG I ++ +S KF+ D
Sbjct: 294 GEXGKTANGKQSGK--NGKPTTAAKAFQRVKAEEWLG--KKGAIDNSYEGTFGQGGWGFKAQQVLGAVRGKDFRHEKTKKKRGSYRGGAIDPHATFSTKFESDD 393
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A4D9D037_9STRA (SRP40_C domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D037_9STRA) HSP 1 Score: 105 bits (262), Expect = 4.670e-20 Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 1324 RTQGEAFKRVQDDQWVGGLKKG-FDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFD 1563
R GEAF+RV D+ W +K DN+Y GTFG GGYG KASEKL VRGKDFRHEKTKKKRGSYRGG IS+ S+S+K+D
Sbjct: 391 RVSGEAFRRVDDEYWGQQIKDDRLKDNSYAGTFGSGGYGAKASEKLMTVRGKDFRHEKTKKKRGSYRGGTISLESHSIKYD 471
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.990e-20 Identity = 67/133 (50.38%), Postives = 76/133 (57.14%), Query Frame = 1
Query: 1168 AWVPKLLTPSKDVDAAASNGVANGGMKTPVKGGDSGDKANGDSTGKKSTGKSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 1566
AW P TP AAA+ KTP G SG GEAF+RV+D++WV L G D N YE TFGQ GYG+KA + L VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct: 418 AWTPSAKTPEVKQPAAAA--------KTP---GSSG-------------------GEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO) HSP 1 Score: 101 bits (252), Expect = 5.720e-20 Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 1327 TQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1572
T +AF+RV++++W+G KKG DN+Y GTFG G+G+KA E L KVRGKDFRHEKTKKKRGSYRGG+I + S S KF+ D
Sbjct: 201 TAXKAFQRVREEEWIG--KKGSWDNSYTGTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFESDD 280
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A8JCQ6_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JCQ6_CHLRE) HSP 1 Score: 96.3 bits (238), Expect = 6.420e-20 Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 1327 TQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNS-YSVKFDDSD 1572
T G+AF+RV+ ++W+G KKG DN YE TFGQ G+G+KA + L VRGKDFRHEKTKKKRGSYRGG I ++ +S KF+ D
Sbjct: 34 TAGKAFQRVKAEEWLG--KKGAIDNRYEATFGQAGWGYKAQQVLGAVRGKDFRHEKTKKKRGSYRGGNIDPHATFSTKFESDD 114
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO) HSP 1 Score: 99.8 bits (247), Expect = 3.040e-19 Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 1327 TQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI-SMNSYSVKFDDSD 1572
T +AF+RV++++W+G KKG DN+Y GTFGQ G+G+KA E L KVRGKDFRHEKTKKKRG+Y+GG+I +M S S+KF+ D
Sbjct: 208 TAAKAFQRVKEEEWLG--KKGAWDNSYVGTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFESDD 288
BLAST of mRNA_H-canaliculatus_F_contig1016.184.1 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE) HSP 1 Score: 101 bits (251), Expect = 4.030e-19 Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 1261 GGDSGDKANGDSTGKKSTGKSRTQGEAFKRVQDDQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDDSD 1572
GG DK G+ST K AF+RV+ ++W+G KKG DN+YEGTFGQ G+GFKA + L VRGKDFRHEKTKKKRG+YRGG I +S+S KFD D
Sbjct: 290 GGSDSDKKKGNSTFK-----------AFQRVKAEEWLG--KKGAWDNSYEGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFDSDD 380
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 224.6 |
Seed ortholog evalue | 9.9e-56 |
Seed eggNOG ortholog | 2880.D7FH06 |
Preferred name | SRP40 |
KEGG ko | ko:K10771,ko:K11294 |
KEGG Pathway | ko03410,ko05130,map03410,map05130 |
KEGG Module | M00296 |
GOs | GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360 |
EggNOG free text desc. | RNA polymerase I core binding |
EggNOG OGs | KOG2992@1,KOG2992@2759 |
EC | 4.2.99.18 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko03400 |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | SRP40, C-terminal |
Ec32 ortholog | Ec-26_003010.1 |
Exons | 8 |
Model size | 2810 |
Cds size | 1395 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928645.1699936-UTR-H-canaliculatus_F_contig1016:6603..6786 | 1622928645.1699936-UTR-H-canaliculatus_F_contig1016:6603..6786 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1016 6604..6786 + |
1696845510.8512044-UTR-H-canaliculatus_F_contig1016:6603..6786 | 1696845510.8512044-UTR-H-canaliculatus_F_contig1016:6603..6786 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1016 6604..6786 + |
1622928645.3220947-UTR-H-canaliculatus_F_contig1016:12403..13635 | 1622928645.3220947-UTR-H-canaliculatus_F_contig1016:12403..13635 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1016 12404..13635 + |
1696845510.9539616-UTR-H-canaliculatus_F_contig1016:12403..13635 | 1696845510.9539616-UTR-H-canaliculatus_F_contig1016:12403..13635 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1016 12404..13635 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928645.1968627-CDS-H-canaliculatus_F_contig1016:6786..6858 | 1622928645.1968627-CDS-H-canaliculatus_F_contig1016:6786..6858 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 6787..6858 + |
1696845510.8687778-CDS-H-canaliculatus_F_contig1016:6786..6858 | 1696845510.8687778-CDS-H-canaliculatus_F_contig1016:6786..6858 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 6787..6858 + |
1622928645.2105532-CDS-H-canaliculatus_F_contig1016:7777..7855 | 1622928645.2105532-CDS-H-canaliculatus_F_contig1016:7777..7855 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 7778..7855 + |
1696845510.8781075-CDS-H-canaliculatus_F_contig1016:7777..7855 | 1696845510.8781075-CDS-H-canaliculatus_F_contig1016:7777..7855 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 7778..7855 + |
1622928645.2253788-CDS-H-canaliculatus_F_contig1016:8533..8917 | 1622928645.2253788-CDS-H-canaliculatus_F_contig1016:8533..8917 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 8534..8917 + |
1696845510.8891547-CDS-H-canaliculatus_F_contig1016:8533..8917 | 1696845510.8891547-CDS-H-canaliculatus_F_contig1016:8533..8917 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 8534..8917 + |
1622928645.239848-CDS-H-canaliculatus_F_contig1016:9037..9262 | 1622928645.239848-CDS-H-canaliculatus_F_contig1016:9037..9262 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 9038..9262 + |
1696845510.8994598-CDS-H-canaliculatus_F_contig1016:9037..9262 | 1696845510.8994598-CDS-H-canaliculatus_F_contig1016:9037..9262 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 9038..9262 + |
1622928645.2562127-CDS-H-canaliculatus_F_contig1016:9785..9938 | 1622928645.2562127-CDS-H-canaliculatus_F_contig1016:9785..9938 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 9786..9938 + |
1696845510.9089844-CDS-H-canaliculatus_F_contig1016:9785..9938 | 1696845510.9089844-CDS-H-canaliculatus_F_contig1016:9785..9938 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 9786..9938 + |
1622928645.2789562-CDS-H-canaliculatus_F_contig1016:10348..10515 | 1622928645.2789562-CDS-H-canaliculatus_F_contig1016:10348..10515 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 10349..10515 + |
1696845510.9255903-CDS-H-canaliculatus_F_contig1016:10348..10515 | 1696845510.9255903-CDS-H-canaliculatus_F_contig1016:10348..10515 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 10349..10515 + |
1622928645.2923043-CDS-H-canaliculatus_F_contig1016:11320..11468 | 1622928645.2923043-CDS-H-canaliculatus_F_contig1016:11320..11468 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 11321..11468 + |
1696845510.9352596-CDS-H-canaliculatus_F_contig1016:11320..11468 | 1696845510.9352596-CDS-H-canaliculatus_F_contig1016:11320..11468 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 11321..11468 + |
1622928645.3076682-CDS-H-canaliculatus_F_contig1016:12235..12403 | 1622928645.3076682-CDS-H-canaliculatus_F_contig1016:12235..12403 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 12236..12403 + |
1696845510.9457262-CDS-H-canaliculatus_F_contig1016:12235..12403 | 1696845510.9457262-CDS-H-canaliculatus_F_contig1016:12235..12403 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1016 12236..12403 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1016.184.1 >prot_H-canaliculatus_F_contig1016.184.1 ID=prot_H-canaliculatus_F_contig1016.184.1|Name=mRNA_H-canaliculatus_F_contig1016.184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=465bp
MALAASLEDLPASALHPVLHAFLLECGLSTTAAALREETGKSSKKLAKAR TSLGAGCQDLLEIVNAHRRRHAVAAADNEVEEDVEHAKKVKKAKAAAAAA AAVVASSSSSSSSSSSSSSSSSSSSSSSSEEEDSDDDKSEEEEEEEEEEE KPEANVKTSKKSKKAAAAAAEAAEAAAAAESSSDEESEESSDGEEEEVKE GEKQEENRPKKRKAAAVEADSSSDQDDSDSDEEEEEEEEEDEAKKPPAKK KKKVEPAAAAAATAAASDSDSSSSSSSSSSSDSSSDSDSSDDSSSSDDET DEEQEAKRAVVKASAEKERRRSSAAAAAAWVPKLLTPSKDVDAAASNGVA NGGMKTPVKGGDSGDKANGDSTGKKSTGKSRTQGEAFKRVQDDQWVGGLK KGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEI SMNSYSVKFDDSDG* back to topmRNA from alignment at H-canaliculatus_F_contig1016:6604..13635+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1016.184.1 ID=mRNA_H-canaliculatus_F_contig1016.184.1|Name=mRNA_H-canaliculatus_F_contig1016.184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7032bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1016:6604..13635+ (Hapterophycus canaliculatus Oshoro5f female) ATTGAATCAGCGAAAACACACCCCACACTTGACATCCGACACACGGGTCA
AGGAGGAGGAGATAAAGGGGGAGAGAGGACGACCGTGGTTAATTTCGTCA
TCCACACGTACCACGGAGCAGCAGTAGTTCACCCAGCAATCTACCCGGAG
TCGACTGGCCCTGCAGCTAAGTCTCGTGTGGCCATGGCTCTCGCAGCATC
GTTAGAGGATCTCCCAGCCAGTGCCTTGCACCCTGTTCTCCACGCCTTCC
TCTTGGTAAGACATTAACTCTTATTATGCGGGCGAAGCGATGATCCCTAG
ATATTTGTTGGTTGGGCAGTAGCACCGTTGATTCCCAAGGTCTGTCGGAT
TCCTAGCCGCGCAGTCCCAGTCGTCGAAACTAGGAAACCATCTCCGATCA
CCGCCTGTGGTTCGTTCGTACCAGCACCTTCCCTTCTTCAGGCTTTTCCC
TTTCTCCTTGCTCTACGGGTGGCTGCCTAGCTCCCTTTCAAAGCTCAACG
CGATACCATGCCCAGATGGTGAAGGAGAACCTAACTTGTCACTTTCTTTG
TGTCTGCTGAGGCGGGTTGTTCACCCCGGGTGCGCGAATCCAAGCTCGCC
AATCCCCGAAAGCGGCGCTTGGCTTCCATGATGGATGCTTTTCATTCAGC
ACGTTTGGAATACACCTGCCAGAAAGGGAAACTTGACATACTTCACACAG
AGCCGTGGTGGTTCAGATGTACGCCGGGGTCAGGCTAGAAATTGTGCTGG
CGCGGAAGTGGCCCTCCGCGGAGAAGTATCGCGACGTTGTAACAATTCCC
GCAGGAGACGTTGCAGCTGGTCCTAGTGGTCTCACTTTCGCTCTTCCTTG
CCCGGCATGTCATGGTGCCATCCAGGTGGCAGTCGTAAGCGCTCGTTGTC
TAAACATTGCGTGGTAGAGACCCAAAGGGATGTGCAAGATGTCATACTCC
TAGCCATTTTCGCGTGGTATCGTTGCGGGAAGCAGGAACCGAACAGAGGA
TGGTGCCCATGATCATCTCCAGGATGAATCCTCCATCGGCAAGGTGGAGG
TGGGGTAGGAACGACAACCCCTGAAGCTTGCTTTGAATTGATCTCTACCA
CCATGAGGGCCGCGTGCGACCCTTACGAAGCGAACTTGACCCTTCTGCCT
CCTTCTCCTCGCGCCTTCGGCCAGGAGTGTGGGCTTTCGACCACCGCGGC
AGCCTTGCGGGAGGAGACGGGCAAGAGCTCGAAGAAGCTCGCGAAAGCAA
GGGTGCGTATTCGGTTGGATCGCTGGGTACCTGGGTGCTCGTTCAATGCA
CAAGTCATGATTCGCCAAGCGTGCCTCGCCAGCCAGCTGGCCGAATGCAT
CGAGCGTCACGTGTATATGGCAAGGGGCATCATACGCGTGTTTCATCTCG
ACGAGTAGTGGTTGTACTCCTCTGGTCTCTCACAGTTGAAAACCTCCATA
CGCGTGTGACCGGGAGTGAGAATGACAGATACCGCAACGCTCGAGAGGGG
TCCACCTCCGCCACTCAAAGATGGGGTAGCAATACACACACGAACACACA
CGCTCTCGTTTTGTGGGAAGTATTTACGGTACAACAGCGACGGCCCTCAC
TTAAACCGCGCCGGAGTTGCTCGTGAAGGCCAGATCGGTCCTGGTTTTGC
GCTGCCGCATATGTCTTTCCCCGCGGTTTTGATACGGTCAGGGCATACGG
TCATGCTTCTCGCACCATTTGTTGCCTCTGGGAACTCCCGACAGCAAGAT
TGCGGAACGTCCCCCGCTGCTCCGCGTACCACTGTCGACTGATCGTGAGT
GAGTACATCCACAATGTCAAAAATCCGTTTGCCTTCCGAGGGATCCTGAA
TCTTTCTTGTCCGACTGTGTGCACGCGTCCTGCTTTGCGATGCGGGTGAC
GCACCCCCGTGCGACCTACCGCATATGTAGACGTCCCTGGGGGCGGGCTG
CCAAGATTTGCTGGAGATTGTGAACGCCCACCGCAGACGCCACGCGGTAG
CCGCGGCGGACAACGAGGTAGAAGAGGACGTTGAACACGCCAAGAAGGTC
AAGAAAGCCAAGGCGGCTGCAGCTGCGGCGGCAGCAGTGGTAGCCTCATC
AAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGAAGAAGAGGACAGCGACGACGACAAAAGTGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAACCGGAGGCCAATGTAAA
GACTAGCAAAAAGTCCAAAAAGGCGGCAGCGGCGGCGGCAGAGGCGGCAG
AGGCGGCGGCGGCTGTTGCGGCCGAAGCCAGCAGCGACGACGAAAGCAGC
AGCAGCAGCGGGGAGGACGAAATCGAAGAGGGTAAGGCGCAGGCGAACGG
CAAGAAGCCCAAGAAGGTTGCGGCGGCAGTGGAGGCCGAATCCAGCAGCG
ACGAGGAAAGCGAGGAGTCGAGCGATGGAGAAGAGGAGGAGGTGAAGGAA
GGAGAGAAACAGGAAGAGAATCGGCCCAAAAAGAGGAAGGCGGCTGCTGT
CGAGGCGGACTCTTCTTCGGACCAGGACGACAGCGATAGCGACGAGGAGG
AGGAGGAGGAGGAGGAGGAGGATGAAGCGAAAAAGCCCCCGGCCAAAAAG
AAAAAGAAGGTGCCGCATCGAACTACGGGTCTGCTTGGGCGGTCCATGTT
GAAGAAGTAGAAAACCCTGCGAACCCTAGCTTAGTGGCCACCTGCGATAT
ATGAGCGTTTGCGCACGTTTATGGTCGGTGTTGTGGTCGGTGTCGTCTAT
CGTGCTTTGCCCTCGTTGTTGTTGCTGTCTTGCAACAACTCGGTACCAGC
CCTTAGCTCCTCTTTTCGTCTTCACGTCAAGAGCGTCAATGGTCGGACGT
GACTCTGATCGGAGAGCAACGGTGCTGTCTGAGGTGAATGTGCCCGAGAT
ATCCCCAGAAAAGCATGCTGCACGAGACATCGCCCGAACCCTAGCACGGC
CCCCTCGAGGCTGCTGTTGGTCCGAATAGAACAGCGGAATTCGCGATAAA
CGCTCCCTCTTCTTGCTCTTTTGTCTCTACCTGTGCGCATCTCGCTGTCG
TGTTTCGTTTCTCAATTATCTTCTGAACCTCAACACTTGTACTTACGTGA
TGACCGTACGGGTTGGGGTGCAGGTAGAGCAGGTAGAGCCTGCTGCCGCC
GCCGCCGCCACCGCCGCCGCTAGCGATAGCGATAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGTAGCGACAGCAGCAGCGACAGCGATAGCAGCGACGATT
CTTCTTCCTCGGACGACGAGACGGACGAAGAACAGGTGGGCATCCACGCC
TCAACTACTGGTCTTTTGCCGTTGCCCGTCTTGCTTTCCGGCTTACTTTT
TGTTGTTTTGCCTTCCTTTTTTTCCGTGTTGATTTGTCTTCAGTCGTTCG
TTCTCTCGTCCTGCCTTTTTTTTTTCATGTGTGAAAGTTAAACATGCAGA
GTATGACGATCGAGAAACGTCATGATTGTGTTTTTTCATGTGTGAAAGTT
AAACATGCAGAGTATGACGATCGAGAAACGTCATGATTGTTCAGTAACGT
GACTCACGCGTACGCTACACTACTGTCGCTGCCTCGTCTTTTGTCGGCAG
TTCCAGCTCAGTCTTTCTCATGTCCCGCTGCGTCGGGTTACAAAGACTCC
GCTCGAGTGTCTGATGTTTTGTTGTTTGTGCTCGTTTTATTCCAGGAGGC
GAAAAGGGCGGTTGTCAAGGCCTCGGCGGAGAAGGAGCGAAGGAGATCCT
CGGCGGCCGCAGCTGCCGCCTGGGTACCAAAGCTCCTCACGCCCAGCAAG
GACGTCGACGCCGCGGCATCCAACGGCGTGGCGAACGGCGGGATGAAGAC
GCCAGTGAAAGGGTGAATCGAGTGACATGTCTTTTCAAAACACCCACGAG
AACGTCCTGTTGCACAACGTGTCTGCATAACGTCTTCCGCTCTTACGTAT
ATGCCCAGTACACTGTCCAGAAGACGACTTAGGGATGATGTGAATGTCTT
GAGATGCAGGCGCGGCTGAAGATTAGCGAGCGATACCTGAGACGCAATAT
GTATTGTGTCTTTTTTTTATCGTTGCACCGGGTTGAAAAATGTCAGGTTG
TCTATCACGTTCGATATGCGAAATGTGCTTACCGGGGCACGCTACAAGCA
AAGATGAGGAATCGGATGGCGACGGCCGGCGCTCCGTATGAATTGATCTG
GACGCTACGACCATGGTAGATTCAAAAATCGCCTCATGATGCCTGGCAAG
TGGAGAAACATCAACGCTCGACGCACAATTCGCAGCTTTATCACCCGGTC
CGGTGCTTTCACTCTGTCAAAAACAGCAGTTGCAAGCAGGCGAGAGAGGA
CACAAACGTACGTCCAGGAATCGGAAGCCCTGTGCTTTTGCGCATCTCTG
TTGACCTTCATTGTTACTAGCCACGTTTCGAGCTGCCCACGGTAACGCAT
TTTCAGTACACGAAACGGTACGGTTTGACATTTTCTTGTGAACCAAAAAA
AGAAGTAAGTGATATCCGCATCATTGGGAGCGTGCATTCTTCCCATCCAC
TCTTCCTTACAGAGTGCCGAAATGGACGCCGGTCTGCGTATCGCCCGAAG
CGGCGATTTGCCGTACGAGAGATGAAAACAAAACGAAAAACTGAAAAAAA
AAACGGAAAAAATACAGGGGGGATTCGGGAGACAAGGCTAACGGTGACAG
CACCGGCAAAAAATCGACGGGCAAGTCGAGGACGCAGGGGGAAGCCTTCA
AAAGGGTGCAGGACGACCAGTGGGTGGGGGGCCTCAAGAAGGGGTTCGAC
GACAACACGTATGAGGTGCGTATTGGTGTGTGTGTGGGTTGAAATTCTTG
AGCGTTTAGTGGGGTGCATGCTTGTCTGTCTTTCATACTATGTCGGCGGC
CCTCGATGGCTGCTGTCTGAAATTATGTCAGCCTGAATCGGGCGACGAGA
TTAGCACCGTTCTCAACTTGCGGCGCTCCTAGAGTACAAGAATGTGCTGC
GTACTAAAGGTGTAAGATGAGTTCAAGTCCGGGTCTCATATTTTACTTGT
GGAAGGCGGCGTGTCGGTGGTGCGAATCAGGCATGTGTGTGCATGGTATC
GGATCTGAAAGCATGGTCAAATTTGGGCGAAAAGGAGGGCAACTGTCTTC
CTGAATCGCAGGGTCAACCGACAGGGGGCTTGCTAAAAAGATTAAAAGCA
TAAGCACAAGCCCAGGTGCCTCACAGGATCCCTTTGAATGAAAGCAATCG
TCCCTTCACTGCCAACGCACCTCATCGGCGCACAGCACAAACGAGTGCGC
CGGTGCATCTTCACCACGGTAGTCCCTGTCTTTCCCTCTCGTAGCTGCTA
CCCCTGCCTGCCTTTGTCCGCTCTCGACCTAGCCTTGGCAGCGCTCTACA
CGTCCTTGCTCTTGTCGCGCCGCTCAACCCCCCCCCCCGCCCCCCTCCCC
GCACTCTGGAGTCGTACAAGTATCGTTCTGCCCCCCGATATCCTCGCCCA
AATTTTGACCAAGTGTATGTCCTGCCATGTCCTGTGTGATGACTCCTAAA
TACGGTCTCCGCGCATCTATTCTTTGAACCAGGGCACATTCGGACAGGGC
GGGTACGGCTTCAAGGCCAGCGAGAAGCTCTCCAAGGTGCGAGGGAAGGA
CTTCCGCCACGAGAAAACGAAGAAAAAGCGAGGCAGCTACAGGGGGGGGG
AGATCTCGATGAACAGCTACTCGGTCAAGTTCGACGACAGCGACGGCTAA
GGACGATGCTAGTGAATTGTGGCGGTGACAAAGACTACGATGATCGCAAT
AGACATGTTGGAACGGATGGGCTGGTCGTGCGGCATTGCTACCAAGACTT
CGCCTTGTTGCGCGTCGCCTGGGCGTGAGGGTGGGCAGGCGGATACCCTT
CAAATGCCAGACGCCTCTGTAAAGTCGACTTTGGCAAGCGATATTTCCCA
GCGGTCGAGCGTGGAGCCAGCTGGTGCGGGCCGATGTCGAACACGAACGT
TGTCGCCGTACGGTGGCTGGGTTGTGAGCGATAGGCGATGCCTTGAAGAC
CTGGTGTCACCCCTCTCTGAACGCGTTTGGGGAGGAATGTCCACGTTATT
TTTGTGGGAACCACGCACCGATGATCTTTGGCGATGTTCCTTCTTCTGGA
AGGGCTGTTTGCACGGCAGTTGTTGAAAAAGTGGTCAAATTGAGGTGGTC
TCCGTCAAGGCTGTGTATCCCGTTCGTCATTATTTAGGTCTCCCGAGTGG
GAGGGTGTGTGGCAAGGCCGGATTCTTTTCATGGCCATCACTGCGGCTTG
GTGCGGGGATGGATGTGTGGCTTGCGATGTGCGGCTGAGGCGTGTCGACG
AAGGGAAACCTTGATGTGGAGGAAGTCGAAGCTGGCAGCAGATGCTAAGG
TGCCGTCACATTCCGTTGAGAGGGATTCCAGGGAGATCAGAATCAGTTCA
TTGTAACAGGGTAAAAAGGCGAATTCGGGACTCAACAGATGTGGCAGGGC
ATTTCGTATTCTTGCGCAGGATGATGAGCACACGTACGCTGCAGAGCGAT
TGCGTTGAGTTTACATTCAAAAAAGACTGTCGGAGTGGAATATTTCGACC
ACGTGCTACGCGACAACACGGCGTAAGCGGTAAAGCTTGCATACTTTTAA
GTTTGATGTTGAATCTAGACTCCGACTCCCCATTATCCAAGTGTCGCGCT
ATTGCGCGGATTTGTCGCCGGCGTACGTAGCAACAGCTATTCAGCTGCCC
TTCCATTGGGTGCGTTCTGTACGGGAATCTTGGTACATGGGCAGCGGGTG
AGGACAAGATCGCCCCCATCCCCCTCTGTGTTCACTTCTTGTATGTGTTC
CTGTGAACTCGAAACGTGAAGATCCGAGGCGTCGCGATCGTGGATTAAAC
CTGTGGAGCATAGCCTGTGGTCAAGCGTCCAAATTAAGGGTAAAATTGAG
CCATGAGCTTCGTGCCCTCGCCTCATTCGCTT back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1016:6604..13635+ >mRNA_H-canaliculatus_F_contig1016.184.1 ID=mRNA_H-canaliculatus_F_contig1016.184.1|Name=mRNA_H-canaliculatus_F_contig1016.184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2790bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1016:6604..13635+ (Hapterophycus canaliculatus Oshoro5f female) ATGGCTCTCGCAGCATCGTTAGAGGATCTCCCAGCCAGTGCCTTGCACCC TGTTCTCCACGCCTTCCTCTTGATGGCTCTCGCAGCATCGTTAGAGGATC TCCCAGCCAGTGCCTTGCACCCTGTTCTCCACGCCTTCCTCTTGGAGTGT GGGCTTTCGACCACCGCGGCAGCCTTGCGGGAGGAGACGGGCAAGAGCTC GAAGAAGCTCGCGAAAGCAAGGGAGTGTGGGCTTTCGACCACCGCGGCAG CCTTGCGGGAGGAGACGGGCAAGAGCTCGAAGAAGCTCGCGAAAGCAAGG ACGTCCCTGGGGGCGGGCTGCCAAGATTTGCTGGAGATTGTGAACGCCCA CCGCAGACGCCACGCGGTAGCCGCGGCGGACAACGAGGTAGAAGAGGACG TTGAACACGCCAAGAAGGTCAAGAAAGCCAAGGCGGCTGCAGCTGCGGCG GCAGCAGTGGTAGCCTCATCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAAGAAGAGGACA GCGACGACGACAAAAGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG AAACCGGAGGCCAATGTAAAGACTAGCAAAAAGTCCAAAAAGGCGGCAGC GGCGGCGGCAGAGGCGGCAGAGGCGGCGGCGGCTACGTCCCTGGGGGCGG GCTGCCAAGATTTGCTGGAGATTGTGAACGCCCACCGCAGACGCCACGCG GTAGCCGCGGCGGACAACGAGGTAGAAGAGGACGTTGAACACGCCAAGAA GGTCAAGAAAGCCAAGGCGGCTGCAGCTGCGGCGGCAGCAGTGGTAGCCT CATCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCGAAGAAGAGGACAGCGACGACGACAAAAG TGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAAACCGGAGGCCAATG TAAAGACTAGCAAAAAGTCCAAAAAGGCGGCAGCGGCGGCGGCAGAGGCG GCAGAGGCGGCGGCGGCTGCCGAATCCAGCAGCGACGAGGAAAGCGAGGA GTCGAGCGATGGAGAAGAGGAGGAGGTGAAGGAAGGAGAGAAACAGGAAG AGAATCGGCCCAAAAAGAGGAAGGCGGCTGCTGTCGAGGCGGACTCTTCT TCGGACCAGGACGACAGCGATAGCGACGAGGAGGAGGAGGAGGAGGAGGA GGAGGATGAAGCGAAAAAGCCCCCGGCCAAAAAGAAAAAGAAGGCCGAAT CCAGCAGCGACGAGGAAAGCGAGGAGTCGAGCGATGGAGAAGAGGAGGAG GTGAAGGAAGGAGAGAAACAGGAAGAGAATCGGCCCAAAAAGAGGAAGGC GGCTGCTGTCGAGGCGGACTCTTCTTCGGACCAGGACGACAGCGATAGCG ACGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAAGCGAAAAAGCCCCCG GCCAAAAAGAAAAAGAAGGTAGAGCCTGCTGCCGCCGCCGCCGCCACCGC CGCCGCTAGCGATAGCGATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTA GCGACAGCAGCAGCGACAGCGATAGCAGCGACGATTCTTCTTCCTCGGAC GACGAGACGGACGAAGAACAGGTAGAGCCTGCTGCCGCCGCCGCCGCCAC CGCCGCCGCTAGCGATAGCGATAGCAGCAGCAGCAGCAGCAGCAGCAGCA GTAGCGACAGCAGCAGCGACAGCGATAGCAGCGACGATTCTTCTTCCTCG GACGACGAGACGGACGAAGAACAGGAGGCGAAAAGGGCGGTTGTCAAGGC CTCGGCGGAGAAGGAGCGAAGGAGATCCTCGGCGGCCGCAGCTGCCGCCT GGGTACCAAAGCTCCTCACGCCCAGCAAGGACGTCGACGCCGCGGCATCC AACGGCGTGGCGAACGGCGGGATGAAGACGCCAGTGAAAGGGAGGCGAAA AGGGCGGTTGTCAAGGCCTCGGCGGAGAAGGAGCGAAGGAGATCCTCGGC GGCCGCAGCTGCCGCCTGGGTACCAAAGCTCCTCACGCCCAGCAAGGACG TCGACGCCGCGGCATCCAACGGCGTGGCGAACGGCGGGATGAAGACGCCA GTGAAAGGGGGGGATTCGGGAGACAAGGCTAACGGTGACAGCACCGGCAA AAAATCGACGGGCAAGTCGAGGACGCAGGGGGAAGCCTTCAAAAGGGTGC AGGACGACCAGTGGGTGGGGGGCCTCAAGAAGGGGTTCGACGACAACACG TATGAGGGGGGATTCGGGAGACAAGGCTAACGGTGACAGCACCGGCAAAA AATCGACGGGCAAGTCGAGGACGCAGGGGGAAGCCTTCAAAAGGGTGCAG GACGACCAGTGGGTGGGGGGCCTCAAGAAGGGGTTCGACGACAACACGTA TGAGGGCACATTCGGACAGGGCGGGTACGGCTTCAAGGCCAGCGAGAAGC TCTCCAAGGTGCGAGGGAAGGACTTCCGCCACGAGAAAACGAAGAAAAAG CGAGGCAGCTACAGGGGGGGGGAGATCTCGATGAACAGCTACTCGGTCAA GTTCGACGACAGCGACGGCTAAGGCACATTCGGACAGGGCGGGTACGGCT TCAAGGCCAGCGAGAAGCTCTCCAAGGTGCGAGGGAAGGACTTCCGCCAC GAGAAAACGAAGAAAAAGCGAGGCAGCTACAGGGGGGGGGAGATCTCGAT GAACAGCTACTCGGTCAAGTTCGACGACAGCGACGGCTAA back to top
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