mRNA_H-canaliculatus_F_contig10157.180.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 318 bits (814), Expect = 1.030e-87 Identity = 227/587 (38.67%), Postives = 290/587 (49.40%), Query Frame = 3 Query: 234 GVEAVT-FNSNCVRNHAALGNLPTDVRGEEEVA*VLDYVGGVQPCRGVCAQHVAAEAGMPAGSAEAFPTLVRKAERGQKLVERARGALEGFLRQRVFDRSSGGFRGSWFCGRTRCLVFEGM*WRGERVRRQ*LGTAGFVLQDVPAGGCKTADPQRP*RGRWEAHHHQQHDQRTKGITTPAIRWDTHCLILSMVVCCARLASSVPPFSPAHHATT*MSGSQAPTYCKRAEEG*RRKISTCGTNPRHEEGMRTAHGRTRRGCSQLPGPRGHEEDIRLEAPRGQRPETLL*CTLEWLYSVGGV*ACSLQPLGLGVYWGVRSRTTVPRCLLSCCNLRRHLQNATV----------------------VPR-------LQDIVRWNTTEGKARGFRFNTSTLRLAVYIQGIAGTAAYNLLRNVIHLPSPQRIKELRRNAAPPR---------KYGKMAAFQDADKATLTGVLAWDLMHLNKNGFSFAPNGGGLTGLVDTATFFNPIFNERCEEERGLKTTLEKIVATQYVEMFFVSLGKPEYKFVVWREAIRSLSTVYIQRMVMTAARYLACAHEDKGFDVIATVCDGASEQ 1877 GV +T N +CVRNH AL T + E+++ +L+ V PC+GV QHV +A MPAG+A+ FP+LVR+A+R LE +R GR + EG+ G LGT G VP G G+ + W C+ ++ T G + C+ R + N E ++++ + R + D+ + + + P L+S A L R RTT R ++R+ V +P+ +D V+WNT+ GKA+GFRF+ +T+RLA+YIQGIAGTAAYN+LRNV+HLPSP+RIK+LRRNAAPPR KYGK+AA QDADK L GVL WDLMHLNKNGFSFAPNGGG TGLVD TFFNPI+ + ++ LEKIVATQYVEMFFVS+GKPEYKFVVWREA+RSLST YIQRM++ A RYLA AH DK FDVIAT CDGA E Sbjct: 172 GVGPITSINGHCVRNHDALRRF-TAIGAEDDLTELLNVVWYTLPCQGVSQQHVREDAKMPAGAADVFPSLVRQAQRN----------LESNPTLPFGER-----------GRWQNAFVEGL-LSGPSGVSGVLGTVGG--HSVPGHG---------------------------GVGGHKVFWAKGCVGVA----------------------TPFQGLNSVPRCQGCRGFVREALRPRLQNASKAESLKSS--------KNIYMTRAQKVDVTIVSAPQRVPRIT-----SKLWST----AADLN----------RERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGVVKEVEPILEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPEH 657
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 311 bits (797), Expect = 5.970e-86 Identity = 151/213 (70.89%), Postives = 174/213 (81.69%), Query Frame = 3 Query: 1266 QDIVRWNTTEGKARGFRFNTSTLRLAVYIQGIAGTAAYNLLRNVIHLPSPQRIKELRRNAAPPR---------KYGKMAAFQDADKATLTGVLAWDLMHLNKNGFSFAPNGGGLTGLVDTATFFNPIFNERCEEERGLKTTLEKIVATQYVEMFFVSLGKPEYKFVVWREAIRSLSTVYIQRMVMTAARYLACAHEDKGFDVIATVCDGASEQ 1877 +D V+WNT+ GKA+GFRF+ +T+RLA+YIQGIAGTAAYN+LRNV+HLPSP+RIK+LRRNAAPPR KYGK+AA QDADK L GVL WDLMHLNKNGFSFAPNGGG TGLVD FFNPI+ + ++ TLEKIVATQYVEMFFVS+GKPEYKFVVWREA+RSLST YIQRM++ RYLA AH DK FDV+AT+CDGA E Sbjct: 536 EDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEGGVVKEVEPTLEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPEH 748
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 302 bits (773), Expect = 2.120e-84 Identity = 151/217 (69.59%), Postives = 174/217 (80.18%), Query Frame = 3 Query: 1254 VPRLQDIVRWNTTEGKARGFRFNTSTLRLAVYIQGIAGTAAYNLLRNVIHLPSPQRIKELRRNAAPPR---------KYGKMAAFQDADKATLTGVLAWDLMHLNKNGFSFAPNGGGLTGLVDTATFFNPIFNERCEEERGLKTTLEKIVATQYVEMFFVSLGKPEYKFVVWREAIRSLSTVYIQRMVMTAARYLACAHEDKGFDVIATVCDGASEQ 1877 +P QD V+WNT+ GKA+GFRF+ +T+RLA+YIQGIAGTAAYN+L NV+HLPSP+RIK+LRRNAAPPR K GK+AA QD DKA L GVLAWDLMHLNKNGFSFAPNGGG TGLVD TFFNPI+ + ++ LEKIVATQYVEM+FVS+GKPEYKFVVWREA+RSLST +IQRM++ R LA AH DK FDVIATVCDGA Q Sbjct: 299 LPCAQDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGIVKEVEPILEKIVATQYVEMYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQ 515
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI) HSP 1 Score: 276 bits (707), Expect = 5.040e-81 Identity = 135/213 (63.38%), Postives = 167/213 (78.40%), Query Frame = 3 Query: 1266 QDIVRWNTTEGKARGFRFNTSTLRLAVYIQGIAGTAAYNLLRNVIHLPSPQRIKELRRNAAPPR---------KYGKMAAFQDADKATLTGVLAWDLMHLNKNGFSFAPNGGGLTGLVDTATFFNPIFNERCEEERGLKTTLEKIVATQYVEMFFVSLGKPEYKFVVWREAIRSLSTVYIQRMVMTAARYLACAHEDKGFDVIATVCDGASEQ 1877 +D +RWNT ++GFRF+ +TLR+A+Y+ G+AG+A YN+LRN IHLPSP+R+++L+ AAPPR KYG++AA QDADKA LTGVL+WDL HL+KNG FAP G LTGLVD ATFFNP++ + +E+ GL L KI+ATQYVE FFVSLG PEYKFVVWREA+RSLST YIQRM+ R+L+ AH DKGFDV+ATVCDGASEQ Sbjct: 63 EDQLRWNTRMASSKGFRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQQLQAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRLTGLVDEATFFNPVYQGKVDEDGGLGKQLGKILATQYVE-FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASEQ 274
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE) HSP 1 Score: 226 bits (575), Expect = 6.300e-58 Identity = 127/281 (45.20%), Postives = 163/281 (58.01%), Query Frame = 2 Query: 2807 QVFSGTIVGAIRKCQADRERRGQHRDLALEGYEELASMIDLFVDIFNG-----------------------NYDRTQLERRTGIHKRKGYVTSAEDPILKRLVDILHF-DGWREVLQELSPPTGAGTSNWKKHFITRESWHDLRACALGFLSTSRYLF*NSDRFNVDSLSPNTGRFINPRTMSQDILEHRFAHIQARLGTQRNPTSTEAKERSLRGDINRGLHGGSRGNFNRNAQKGADSNVSSFRGVIMLEVSKAERDAAVRARSRKSMEAVVFPRYISV 3577 +V SGTIV I K Q D G+ DL L+ Y LA+ +D F+DIFNG N+ R++ RR G+ K GY++SA+D L+ L++++ F D WR LQE T G WKKHFIT SW D+R C LGF+S RYLF RF V P FIN R QD++EH F H++ LG+ RNPT+ +AKER RGDI RGLHG R N+NRNA+KG D S +R +ML V + ER +RAR++ S EAV+ P YISV Sbjct: 480 KVLSGTIVCMIEKVQRDLLTMGKPLDLELDCYAALAAKMDAFIDIFNGKLYIIFVLAYCLVFLKQQMWWSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQE---KTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRP-WPHFINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISV 756
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE) HSP 1 Score: 211 bits (537), Expect = 8.710e-58 Identity = 123/271 (45.39%), Postives = 163/271 (60.15%), Query Frame = 2 Query: 2783 SPYPRSPTQVFSGTIVGAIRKCQADRERRGQHRDLALEGYEELASMIDLFVDIFNGNYDRTQLERRTGIHKRKGYVTSAEDPILKRLVDILHF-DGWREVLQELSPPTGAGTS-NWKKHFITRESWHDLRACALGFLSTSRYLF*NSDRFNVDSLSPNTGRFINPRTMSQDILEHRFAHIQARLGTQRNPTSTEAKERSLRGDINRGLHGGSRGNFNRN--AQKGAD--SNVSSFRGVIMLEVSKAERDAAVRARSRKSMEAVVFPRYISV 3577 SP+ QV SG I+ AI R G A E Y+ LA ++ FVDIFNGNY R++++R+ G K G + S E + RL++IL F D W+ L+ P+G G WKKHFIT +SW DLR LGF+S RYLF + +RF +DSLSPN RF++PR SQDI EHRF+HI+A LGT RNPT+ EAK+RS GD+ R +G R N +RN A+ G D + S + I+L V+K E VRA R + V+ PRY+ + Sbjct: 15 SPFSHGVVQVVSGMIIDAIADYMEANGRNG-----AAECYQTLARQMNDFVDIFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPRYMDI 280
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI) HSP 1 Score: 198 bits (504), Expect = 2.080e-50 Identity = 96/145 (66.21%), Postives = 114/145 (78.62%), Query Frame = 3 Query: 1266 QDIVRWNTTEGKARGFRFNTSTLRLAVYIQGIAGTAAYNLLRNVIHLPSPQRIKELRRNAAPPR---------KYGKMAAFQDADKATLTGVLAWDLMHLNKNGFSFAPNGGGLTGLVDTATFFNPIFNERCEEERGLKTTLEKI 1673 +D V+WNT+ GKA+GFRF+ +T+RLA+YIQGIAGTAAYN+L NV+HLPSP+RIK+LRRNAAPPR KYGK+AA QDADK L GVL WDLMHLNK+GFSF PNGGG TGLVD TFFNPI+ R ++ TLEK+ Sbjct: 403 EDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGFTGLVDETTFFNPIYKHEGGVVREVEPTLEKL 547
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE) HSP 1 Score: 169 bits (428), Expect = 5.460e-44 Identity = 91/214 (42.52%), Postives = 133/214 (62.15%), Query Frame = 3 Query: 1272 IVRWNTTEGKARGFRFNTSTLRLAVYIQGIAGTAAYNLLRNVIHLPSPQRIKELRRNAAPP----------RKYGKMAAFQDADKATLTGVLAWDLMHLNKNGFSFAPNGGGLTGLVDTATFF-NPIFNER-CEEERGLKTTLEKIVATQYVEMFFVSLGKPEYKFVVWREAIRSLSTVYIQRMVMTAARYLACAHEDKGFDVIATVCDGASEQ 1877 ++ +N +G ++G+RF+ LR A+Y G+A YN++++V+HLPS ++++RR AA YGKMAA + + L G+L WDLMHLN NGF PNGGG+ GLVD + +P+ + + L+ TLE VATQY+E+F+VS+G +YKF V+REA++ L+ ++RM+ L HEDK FDVI TVCDGA+E Sbjct: 1 MMNYNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEVFWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAEH 214
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE) HSP 1 Score: 168 bits (426), Expect = 5.680e-42 Identity = 120/308 (38.96%), Postives = 146/308 (47.40%), Query Frame = 2 Query: 2810 VFSGTIVGAIRKCQADRERRGQHRDLALEGYEELASMIDLFVDIFNG--------------------------------------------------NYDRTQLERRTGIHKRKGYVTSAEDPILKRLVDIL-HFDGWREVLQELSPPTGAGTSNWKKHFITRESWHDLRACALGFLSTSRYLF*NSDRFNVDSLSPNTGRFINPRTMSQDILEHRFAHIQARLGTQRNPTSTEAKERSLRGDINRGLHGGSRGNFNRNAQKGADSNVSSFRGVIMLEVSKAERDAAVRARSRKSMEAVVFPRYISVD 3580 V SGTIV AIR+ +A+RE RG+ DLAL YE LA ++ FVDIFNG +Y RT+ ERR I+K KGYVTSA+DPIL+RLV+IL +FD W + M Q ILEHRF ++A LGT RNPT+ +AKERS+RGD+NRGLHGGSR NFNRNA+ G D S +R IML V++AE VRARSR S AV+ PRYISV+ Sbjct: 95 VVSGTIVRAIREVRANRETRGEPPDLALGCYEGLAVHLNDFVDIFNGEETKCGLTRKRRHTCNIESKSPGRGVKLKVAAINSYVPFTRSDHFAVHTGDYGRTKFERRAQINKMKGYVTSADDPILERLVEILRYFDDWND-------------------------------------------------------------------MMQIILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVE 335
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI) HSP 1 Score: 156 bits (395), Expect = 2.040e-38 Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 3 Query: 1347 YIQGIAGTAAYNLLRNVIHLPSPQRIKELRRNAAPPR---------KYGKMAAFQDADKATLTGVLAWDLMHLNKNGFSFAPNGGGLTGLVDTATFFNPIFNERCEEERGLKTTLEKIVATQYVEMFF 1703 Y+ G+AG+A YN+LRN IHLPSP+R++ L AAPPR KYG++AA QDADKA LTGVL+WDL HL+KNGF FAP GG TGLVD ATFFNP++ + +E+ L L+KI+AT+YVE F Sbjct: 149 YMHGVAGSAGYNMLRNFIHLPSPRRVQRLEAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGFTGLVDEATFFNPVYQRKVDEDGDLDKQLDKILATKYVERTF 276 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10157.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10157.180.1 >prot_H-canaliculatus_F_contig10157.180.1 ID=prot_H-canaliculatus_F_contig10157.180.1|Name=mRNA_H-canaliculatus_F_contig10157.180.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=260bp MSRYLRGWCTALSLYLCLGHFFCVSHLCARKSIVPVPPPRVFMLVKSHVFback to top mRNA from alignment at H-canaliculatus_F_contig10157:88..5020+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10157.180.1 ID=mRNA_H-canaliculatus_F_contig10157.180.1|Name=mRNA_H-canaliculatus_F_contig10157.180.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4933bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10157:88..5020+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10157:88..5020+ >mRNA_H-canaliculatus_F_contig10157.180.1 ID=mRNA_H-canaliculatus_F_contig10157.180.1|Name=mRNA_H-canaliculatus_F_contig10157.180.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1560bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10157:88..5020+ (Hapterophycus canaliculatus Oshoro5f female)back to top |