mRNA_H-canaliculatus_F_contig10154.177.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10154.177.1
Unique NamemRNA_H-canaliculatus_F_contig10154.177.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10154.177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10154contigH-canaliculatus_F_contig10154:3011..3528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928644.6126015-CDS-H-canaliculatus_F_contig10154:3010..35021622928644.6126015-CDS-H-canaliculatus_F_contig10154:3010..3502Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10154 3011..3502 +
1696845510.4927988-CDS-H-canaliculatus_F_contig10154:3010..35021696845510.4927988-CDS-H-canaliculatus_F_contig10154:3010..3502Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10154 3011..3502 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928644.6263154-UTR-H-canaliculatus_F_contig10154:3502..35281622928644.6263154-UTR-H-canaliculatus_F_contig10154:3502..3528Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10154 3503..3528 +
1696845510.502293-UTR-H-canaliculatus_F_contig10154:3502..35281696845510.502293-UTR-H-canaliculatus_F_contig10154:3502..3528Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10154 3503..3528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10154.177.1prot_H-canaliculatus_F_contig10154.177.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10154 3011..3502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10154.177.1

>prot_H-canaliculatus_F_contig10154.177.1 ID=prot_H-canaliculatus_F_contig10154.177.1|Name=mRNA_H-canaliculatus_F_contig10154.177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
ARLPGAACRASARTHPQPTSFFFSVFGSESVERARSRAPRLQAGRETGLH
GRAFVRPDPHAPPLGAIARRAAASGDADSQLPKGRFPREDGTSRVWYKST
PASALGQYPTGEGGRPTRTLTMPCASEPQGHGRAGRGPMAPLSLHATGVG
VSPGLPGPWGRWR*
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mRNA from alignment at H-canaliculatus_F_contig10154:3011..3528+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10154.177.1 ID=mRNA_H-canaliculatus_F_contig10154.177.1|Name=mRNA_H-canaliculatus_F_contig10154.177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=518bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10154:3011..3528+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCGGCTTCCGGGCGCTGCCTGCCGTGCAAGCGCACGCACGCACCCGCA
ACCAACCTCCTTTTTTTTTTCGGTTTTCGGTTCCGAGTCTGTCGAACGGG
CCCGGTCGAGAGCTCCCAGGCTTCAGGCGGGGCGCGAGACAGGCCTGCAC
GGACGCGCGTTCGTGCGCCCCGACCCGCACGCGCCCCCCCTCGGAGCGAT
CGCGCGGCGAGCGGCCGCTTCCGGCGATGCTGATAGCCAACTTCCCAAAG
GAAGGTTCCCGCGCGAAGACGGCACCAGTCGCGTGTGGTACAAAAGCACC
CCTGCCTCGGCCCTGGGACAATACCCTACCGGTGAGGGCGGGCGGCCCAC
CCGCACTCTAACGATGCCGTGTGCTTCCGAGCCTCAAGGGCACGGGCGGG
CGGGCCGCGGCCCGATGGCGCCGCTTAGCCTGCACGCTACGGGGGTGGGG
GTGTCGCCCGGACTGCCTGGGCCGTGGGGGCGCTGGCGGTAGGTACGGGG
GCTCGCGGCGCGGCTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10154:3011..3528+

>mRNA_H-canaliculatus_F_contig10154.177.1 ID=mRNA_H-canaliculatus_F_contig10154.177.1|Name=mRNA_H-canaliculatus_F_contig10154.177.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10154:3011..3528+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCGGCTTCCGGGCGCTGCCTGCCGTGCAAGCGCACGCACGCACCCGCA
ACCAACCTCCTTTTTTTTTTCGGTTTTCGGTTCCGAGTCTGTCGAACGGG
CCCGGTCGAGAGCTCCCAGGCTTCAGGCGGGGCGCGAGACAGGCCTGCAC
GGACGCGCGTTCGTGCGCCCCGACCCGCACGCGCCCCCCCTCGGAGCGAT
CGCGCGGCGAGCGGCCGCTTCCGGCGATGCTGATAGCCAACTTCCCAAAG
GAAGGTTCCCGCGCGAAGACGGCACCAGTCGCGTGTGGTACAAAAGCACC
CCTGCCTCGGCCCTGGGACAATACCCTACCGGTGAGGGCGGGCGGCCCAC
CCGCACTCTAACGATGCCGTGTGCTTCCGAGCCTCAAGGGCACGGGCGGG
CGGGCCGCGGCCCGATGGCGCCGCTTAGCCTGCACGCTACGGGGGTGGGG
GTGTCGCCCGGACTGCCTGGGCCGTGGGGGCGCTGGCGGTAGGCCCGGCT
TCCGGGCGCTGCCTGCCGTGCAAGCGCACGCACGCACCCGCAACCAACCT
CCTTTTTTTTTTCGGTTTTCGGTTCCGAGTCTGTCGAACGGGCCCGGTCG
AGAGCTCCCAGGCTTCAGGCGGGGCGCGAGACAGGCCTGCACGGACGCGC
GTTCGTGCGCCCCGACCCGCACGCGCCCCCCCTCGGAGCGATCGCGCGGC
GAGCGGCCGCTTCCGGCGATGCTGATAGCCAACTTCCCAAAGGAAGGTTC
CCGCGCGAAGACGGCACCAGTCGCGTGTGGTACAAAAGCACCCCTGCCTC
GGCCCTGGGACAATACCCTACCGGTGAGGGCGGGCGGCCCACCCGCACTC
TAACGATGCCGTGTGCTTCCGAGCCTCAAGGGCACGGGCGGGCGGGCCGC
GGCCCGATGGCGCCGCTTAGCCTGCACGCTACGGGGGTGGGGGTGTCGCC
CGGACTGCCTGGGCCGTGGGGGCGCTGGCGGTAG
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