mRNA_H-canaliculatus_F_contig10152.175.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10152.175.1
Unique NamemRNA_H-canaliculatus_F_contig10152.175.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: D8LNU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU1_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 6.760e-115
Identity = 220/436 (50.46%), Postives = 259/436 (59.40%), Query Frame = 3
Query:  177 GCYCTKLVGHVGLRRQASSAAQRLSEARTQQRENESWAKQSGAREVLAQPPFGVECVEERASAATPGMLDSVEIYLKARRWHHPEGPARRFLSHLLTYPLTLAAGLHGAGLGSGPAAAVSTASTKLEPGAPLGVAGNRKEPDRDWTSSGGGDNSNSTXXXNSSRRLTVVCLGARAESSMPPAFWRETLFALPEVSHLTLHLIGPELSLPSGLAAGRRRQQXXXXXXXXXXXXXXXXXXXXXXXAVSVGARTADISWTRAMLGRAASGCVEGGEER--VAAGSGVXXXXXXXXXXXXXXXXXXXXXXADETVRKADAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREAGAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPLSPPGAEEVVSCNWGVMIVKG 1478
            GC C+     V    +A S  + L EAR Q  EN++WAK  GAR+VL QPPF  E  +  A+ A+  ML+S+E YL+ARRW + E PARRFLSHLLTYPLTLAAGL  A +             K +P               ++T+S G  N           +L VVCLGARAES+MPPA+WRE LFALP+VS L+LHLIGPEL LP G+ A  R                           +SVGARTADI+WTRAM+G +A GCV G E++   AAGS V                      A+E V  ADAFVLFNPGLGHPHL++GWDGALKRLLATGKPIVVSCHS KDLDRD RLLREAGA  C  P  A     EG G  G G G       +ENPFRSLM SEDPLS PG E++V CNWG+M+V+G
Sbjct:   13 GCCCSSAARSVVSSMRAYSTLE-LPEARKQGEENKAWAKTPGARQVLDQPPFEGEDGDIGAARASACMLESLEGYLQARRWPYREEPARRFLSHLLTYPLTLAAGLREARI-------------KQQP---------------EYTNSDGRRN-----------KLAVVCLGARAESTMPPAYWREALFALPDVSRLSLHLIGPELGLPPGVVAAAR--------PGTAACDGAGTIGPISTAVISVGARTADIAWTRAMVGSSAGGCVTGAEQKPEAAAGSAVGSGRGAATEPGGAGAVEA----AEEAVEAADAFVLFNPGLGHPHLRQGWDGALKRLLATGKPIVVSCHSPKDLDRDTRLLREAGAEPCCPPSAANASAGEGNGNRGNGLGA------KENPFRSLMASEDPLSVPGDEDLVWCNWGMMVVRG 390          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: A0A7S2S4T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.220e-14
Identity = 62/190 (32.63%), Postives = 84/190 (44.21%), Query Frame = 3
Query:  252 EARTQQRENESWAKQSGAREVLAQPPFGVECVEERASAATPGMLDSVEI-----YLKARRWHHPEGPA----RRFLSHLLTYPLTLAAGLHGAGLGSGPAAAVSTASTKLEPGAPLGVAGNRKEPDRDWTSSGGGDNSNSTXXXNSSRRLTVVCLGARAESSMPPAFWRETLFALPEVSHLTLHLIGPEL 794
            E+R Q  E+ +WAK    RE L  PP         A+ ATP + D ++      YL+ R W  P+  A    RR LSH+L+YPL+LA G+H  GL SG                                                  RL V+C GAR E+ +PP +W E L A P +SH+TLH +GP++
Sbjct:   48 ESRRQLLEDTAWAKSPAGREALRPPP-------PXATPATPRLADLIQAGDLDGYLRYRGWP-PDAVASPAGRRVLSHVLSYPLSLARGIHKLGLASG-----------------------------------------------DEGRLRVLCAGARGEAGLPPQWWMELLHACPALSHVTLHFVGPQV 182          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: K3WH95_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH95_GLOUD)

HSP 1 Score: 73.9 bits (180), Expect = 1.070e-11
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 3
Query: 1113 DAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREAGAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPL 1418
            DAFVLFNPG+GHP LK+ W   ++ LLA+ KPI++S  S  DLDRD  +LRE                 + + GD +        +P+ NPFR+L    DPL
Sbjct:   70 DAFVLFNPGIGHPFLKQRWQPTMEALLASRKPILLSSFSKVDLDRDVAVLREL---------------CQSQKGDLKF-----LASPQSNPFRNLKYQIDPL 151          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: K8YPB9_NANGC (Mrna processing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPB9_NANGC)

HSP 1 Score: 77.0 bits (188), Expect = 1.550e-11
Identity = 107/421 (25.42%), Postives = 160/421 (38.00%), Query Frame = 3
Query:  228 SSAAQRLSEARTQQRENESW-AKQSGAREVLAQPPFGVECVEERASAATPGMLDSVEIYLKARRWHHPE------GPARRFLSHLLTYPLTLA---AGLHGAGLGSGPAAAVSTASTKLEPGAPLGVAGNRKEPDRDWTSSGGGDNSNSTXXXNSSRRLTVVCLGARAESSMPPAFWRETLFALPEVSHLTLHLIGPELSLPSGLAAGRR--RQQXXXXXXXXXXXXXXXXXXXXXXXAVSVGARTADISWTRAMLGRAASGCVEGGEERVAAGSGVXXXXXXXXXXXXXXXXXXXXXXADETVRKADAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREAGAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPLSPPGAEEVVSCN 1454
            +S A   + A  + RE   W +K + +R +    P       E  S+ +P    ++E Y++ R+W           P  R LSHLL+YPLTLA     LHG+           T+S K   G+P  V                                 V  +GARAE+++P A+W+E L   P +    LH++GPE+  P+   AGR   R                         +  +   ++  + + +  G AA+           A S                        +D +     A VLFNPGLGHP L + W   L+ L A   PI+ + HS +D DRD   L  +G       G+ + + VE              V P  NPF S  +  DPL+   A+ V++ N
Sbjct:    3 TSTAPTAAMAAREAREEALWLSKPTNSRLIQPPAPSAFHAAGEGPSSTSPP--PTLEEYVRRRQWAGKNTETLLASPGLRVLSHLLSYPLTLAHYLPSLHGS----------DTSSAKA--GSPGEVC-------------------------------HVAIIGARAEATLPDAWWQEVLCLQPGL--FCLHMVGPEVYDPA-TRAGRESVRLDPQRQLWMHRRQGMYHVLAPDLVSSFRLSPSSSPPASSASSPGVAATPAPTASSLDPVAPS----------------------QASDASPAAVSAAVLFNPGLGHPALAKAWKPTLQCLQAAKVPILWTAHSAEDRDRDVAWL--SGGAEDKESGFGD-LRVEWL------------VAPGPNPFASRKLVVDPLN---AQHVLAAN 335          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: A0A7S2L7N8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L7N8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.070e-10
Identity = 44/109 (40.37%), Postives = 54/109 (49.54%), Query Frame = 3
Query: 1095 ETVRKADAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREA-GAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPL 1418
            +T     AFVLFNPGLGHPHLK GW  A+  ++ T  P+ ++ HS  D DRD  +LRE+   V    P     V V G  G             R  PF S M + DPL
Sbjct:   12 DTTSNDVAFVLFNPGLGHPHLKSGWRDAMDSIVQTRLPLFLTAHSELDQDRDWNMLRESFERVGRPMP--LHVVHVHGDDGY------------RLCPFASRMSTPDPL 106          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: A0A4D9CVF1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.740e-10
Identity = 124/422 (29.38%), Postives = 176/422 (41.71%), Query Frame = 3
Query:  228 SSAAQRLSEARTQQRENESW-AKQSGAREVLAQPPFGVECVEERASAATPGMLDSVEIYLKARRWHHPE------GPARRFLSHLLTYPLTLA---AGLHGAGLGSGPAAAVSTASTKLEPGAPLGVAGNRKEPDRDWTSSGGGDNSNSTXXXNSSRRLTVVCLGARAESSMPPAFWRETLFALPEVSHLTLHLIGPELSLPS---GLAAGRRRQQXXXXXXXXXXXXXXXXXXXXXXXAVSVGARTADISWTRAMLGRAASGCVEGGEERVAAGSGVXXXXXXXXXXXXXXXXXXXXXXADETVRKADAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREAGAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPLSPPGAEEVVSCN 1454
            +S A   + A  + R+   W +K + +R +    P       E  S+ +P    ++E Y++ R+W           P  R LSHLL+YPLTLA     L+G+           TAS K+  G+P GV+                                V  +GARAE+++P A+W+E L   P +    LH++GPE+  P+   G  + R   Q                        +S       +S                     A+  GV   XXXXXXXXXXXXXXXXXXX+   +  A   VLFNPGLGHP L E W   L+ L A   P++ + HS +D DRD   L  +G    +  G  + + VE              V P  NPF S  +  DPL+   A+ V++ N
Sbjct:  816 TSTAPTAAMAAREARDEALWLSKPTNSRLIQPPAPSAFHDAGEGPSSTSPP--PTLEEYVRRRQWAGKSTETLLASPGLRVLSHLLSYPLTLAHYLPSLYGS----------DTASAKV--GSPGGVS-------------------------------HVAIIGARAEATLPDAWWQEVLCMQPGL--FCLHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGLYHVLAPDLVSSFRLSPSPSPPALS---------------------ASSPGVAATXXXXXXXXXXXXXXXXXXXSPAALSAA---VLFNPGLGHPALAEAWKPTLQCLQAAKVPVLWTAHSAEDRDRDVACL--SGGAEDNESGCGD-MRVEWL------------VAPGPNPFASRKLVVDPLN---AQHVLAAN 1148          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: A0A7S3ZJA7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJA7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.320e-10
Identity = 45/125 (36.00%), Postives = 61/125 (48.80%), Query Frame = 3
Query: 1107 KADAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREA-GAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPLSPPGAEEVVSCNWGVMIVKG 1478
            +ADA VLFNPG+GHP+L EGW  AL+ + A+G+P++V+ HS  D  RD   L    GA+    P                         P +NPFRS +V  DP     A  + S N    +V+G
Sbjct:  176 EADAVVLFNPGVGHPNLAEGWVPALEAIRASGRPLLVTGHSEMDSRRDLTALEARYGALRFAAP-------------------------PCQNPFRSRVVIVDPAD---ATHMTSANAWAFVVEG 272          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: A0A2P4XZM3_9STRA (Mss51 like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XZM3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.010e-10
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3
Query: 1113 DAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREAGAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPLSPPGAEEVVSCNWGVMIVK 1475
            DAFVL+NPG+GHPHL+E W+  L+ +LA+GKP++++  S +D  RD   L+E  A S       ++ E+  R               ++N FRSL    DP +    +  +  N  VM+V+
Sbjct:  267 DAFVLYNPGVGHPHLRESWEPTLQAVLASGKPVLITSFSLEDQQRDITALQELVANSPVL----KQHELRFR------------CRAKQNSFRSLKYQLDPSN---VDTPIQTNNRVMVVQ 368          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: A0A1W0A663_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A663_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.610e-9
Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 3
Query: 1113 DAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREAGAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPLSPPGAEEVVSCNWGVMIVK 1475
            DA VLFNPGLGHPHLK  W  +L   L T KP++++C S KDL RD   L  A          AE ++          G  + + T   NPF+S  +  DPL P   +  +  N   M+V+
Sbjct:  582 DAIVLFNPGLGHPHLKNLWAPSLNLALTTYKPLLITCFSAKDLHRDLEALDNA----------AESLD----------GTLNFTKTAGINPFQSRKIIVDPLDP---QNPIQTNQYSMVVR 679          
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Match: G4ZL84_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZL84_PHYSP)

HSP 1 Score: 70.5 bits (171), Expect = 2.740e-9
Identity = 40/121 (33.06%), Postives = 63/121 (52.07%), Query Frame = 3
Query: 1113 DAFVLFNPGLGHPHLKEGWDGALKRLLATGKPIVVSCHSWKDLDRDARLLREAGAVSCHYPGWAEEVEVEGRGGDGRGGGESDSVTPRENPFRSLMVSEDPLSPPGAEEVVSCNWGVMIVK 1475
            DAFVL+NPG+GHPHL+E WD  ++ +LA+ KP++++  S +D  RD   L++  A S  +     E+  + R               ++N FRSL    DP +       +  N  VM+V+
Sbjct:  263 DAFVLYNPGIGHPHLRESWDPTIQAVLASCKPVLITSFSLEDQQRDIAALQDLVANSPIFS--KHELRFQCRA--------------KQNSFRSLKYQVDPSN---VGTPIQTNSRVMVVQ 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10152.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNU1_ECTSI6.760e-11550.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2S4T4_9STRA2.220e-1432.63Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K3WH95_GLOUD1.070e-1141.18Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
K8YPB9_NANGC1.550e-1125.42Mrna processing protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2L7N8_9STRA1.070e-1040.37Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A4D9CVF1_9STRA3.740e-1029.38Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3ZJA7_9STRA4.320e-1036.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2P4XZM3_9STRA5.010e-1034.71Mss51 like protein n=1 Tax=Phytophthora palmivora ... [more]
A0A1W0A663_9STRA2.610e-937.19Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
G4ZL84_PHYSP2.740e-933.06Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10152contigH-canaliculatus_F_contig10152:1008..3427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue8.9e-12
Seed eggNOG ortholog36331.EPrPI00000014015
Preferred nameRIN3
KEGG koko:K17638
KEGG Pathwayko04014,map04014
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001667,GO:0001726,GO:0001764,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003008,GO:0003674,GO:0005085,GO:0005088,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007409,GO:0007411,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0008150,GO:0008306,GO:0009605,GO:0009653,GO:0009888,GO:0009966,GO:0009987,GO:0010631,GO:0010646,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016477,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0030030,GO:0030139,GO:0030154,GO:0030175,GO:0030182,GO:0030234,GO:0030425,GO:0030695,GO:0030707,GO:0030855,GO:0030971,GO:0031175,GO:0031252,GO:0031267,GO:0031410,GO:0031914,GO:0031982,GO:0032483,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033563,GO:0035556,GO:0036477,GO:0040007,GO:0040011,GO:0042221,GO:0042330,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044703,GO:0046578,GO:0048167,GO:0048468,GO:0048477,GO:0048583,GO:0048588,GO:0048589,GO:0048609,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051056,GO:0051179,GO:0051234,GO:0051674,GO:0051704,GO:0051716,GO:0060429,GO:0060560,GO:0060589,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0090130,GO:0090132,GO:0097447,GO:0097458,GO:0097485,GO:0097708,GO:0098657,GO:0098772,GO:0098858,GO:0099177,GO:0099568,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:1902531,GO:1990138,GO:1990782
EggNOG free text desc.Source PGD
EggNOG OGs1MFS9@121069,KOG2320@1,KOG2320@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size1871
Cds size1428
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10152.175.1prot_H-canaliculatus_F_contig10152.175.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10152 1305..3281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928644.4390469-UTR-H-canaliculatus_F_contig10152:1007..13041622928644.4390469-UTR-H-canaliculatus_F_contig10152:1007..1304Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10152 1008..1304 -
1696845510.3373067-UTR-H-canaliculatus_F_contig10152:1007..13041696845510.3373067-UTR-H-canaliculatus_F_contig10152:1007..1304Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10152 1008..1304 -
1622928644.4768972-UTR-H-canaliculatus_F_contig10152:3281..34271622928644.4768972-UTR-H-canaliculatus_F_contig10152:3281..3427Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10152 3282..3427 -
1696845510.407503-UTR-H-canaliculatus_F_contig10152:3281..34271696845510.407503-UTR-H-canaliculatus_F_contig10152:3281..3427Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10152 3282..3427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928644.456443-CDS-H-canaliculatus_F_contig10152:1304..24711622928644.456443-CDS-H-canaliculatus_F_contig10152:1304..2471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10152 1305..2471 -
1696845510.3862238-CDS-H-canaliculatus_F_contig10152:1304..24711696845510.3862238-CDS-H-canaliculatus_F_contig10152:1304..2471Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10152 1305..2471 -
1622928644.4669323-CDS-H-canaliculatus_F_contig10152:3020..32811622928644.4669323-CDS-H-canaliculatus_F_contig10152:3020..3281Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10152 3021..3281 -
1696845510.3978724-CDS-H-canaliculatus_F_contig10152:3020..32811696845510.3978724-CDS-H-canaliculatus_F_contig10152:3020..3281Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10152 3021..3281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10152.175.1

>prot_H-canaliculatus_F_contig10152.175.1 ID=prot_H-canaliculatus_F_contig10152.175.1|Name=mRNA_H-canaliculatus_F_contig10152.175.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=476bp
MRTGRSISRCGCYCTKLVGHVGLRRQASSAAQRLSEARTQQRENESWAKQ
SGAREVLAQPPFGVECVEERASAATPGMLDSVEIYLKARRWHHPEGPARR
FLSHLLTYPLTLAAGLHGAGLGSGPAAAVSTASTKLEPGAPLGVAGNRKE
PDRDWTSSGGGDNSNSTNSTNSSRRLTVVCLGARAESSMPPAFWRETLFA
LPEVSHLTLHLIGPELSLPSGLAAGRRRQQAQAAAGDGVGSRVRGSPTPT
TTAAVSVGARTADISWTRAMLGRAASGCVEGGEERVAAGSGVGEGLGSGM
SSDSATAAAAAAAAADETVRKADAFVLFNPGLGHPHLKEGWDGALKRLLA
TGKPIVVSCHSWKDLDRDARLLREAGAVSCHYPGWAEEVEVEGRGGDGRG
GGESDSVTPRENPFRSLMVSEDPLSPPGAEEVVSCNWGVMIVKGVEGGNI
ACSRSSAPRGSGGTSDGGNGTSGNL*
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mRNA from alignment at H-canaliculatus_F_contig10152:1008..3427-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10152.175.1 ID=mRNA_H-canaliculatus_F_contig10152.175.1|Name=mRNA_H-canaliculatus_F_contig10152.175.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10152:1008..3427- (Hapterophycus canaliculatus Oshoro5f female)
TGCCTTGTGCGACATCCGCGTCGGCATACACATGTATTCTGTAGCCCCCT TTGCGGTGGGTCACCGGTAACAGCTACTGCTTGTGCTGTTATGCCGTGAT CATCCTGCTGTTCCGCTGTTCCAGCGTGTGCCACCTTGAGGGAACTATGA GGACAGGAAGATCGATCTCACGTTGTGGGTGTTACTGCACCAAATTAGTC GGGCACGTTGGCCTTCGGCGTCAAGCATCTTCCGCTGCACAGAGGTTGTC CGAAGCTCGGACACAGCAGAGGGAAAACGAGTCATGGGCGAAGCAGAGCG GAGCTCGAGAGGTGTTGGCGCAGCCACCGTTCGGCGTGGAATGCGTGGAG GAAAGGGCGTCGGCAGCAACACCAGGCATGCTGGACTCCGTTGAGATCTA CCTTAAGGTTCGCCCTATTTTACTTGTGATACAGACTAATCACTGAGATG GCGGTGTTCTGTATGTCCGGGACGCAGGATGCGGTCGAAGAACTCGATGT GGAAGTGTAGAACTTAGAACAGGTACAAGTAAAGGCCGTTTCCTGTGCAA GTGTAGGATTGTGCATTTAACAAATTCCAGAATCACCACGTGAATGTCGA GCTAGGGAGTTGAAAAACATCGGCGGCAGCCACTTGTCTAGGGGGAATAC AACACTCATTCACGGAACTCAGCAGGTCCCCACCTTCCTCGAACCCCATT GCTGCGGCCGTGCCATCTTGCGTGTTGTTCATACACTGCTTTACGTAAAC AACCAAAGCAAACACTTTCGACCTCACGCCTGGCAACCATCGAAGGTATT CTCACTCAGTAACAAACAAACCACAGCCCGATGATGTGTCTATCACGTTT TGAATTGGTGCGAGATACTCTCCGCTCCTTTTTGTCTAACGGTGCCCCGT TGTCCTCCTTTCCTCCCCTCGATCACCTCCCATTTCCGCTTTCAACCCAT TTCCAGGCTCGTCGATGGCATCACCCCGAAGGGCCTGCTCGACGATTCCT ATCGCACCTCCTGACCTACCCCCTCACGCTGGCGGCCGGCTTGCATGGCG CCGGGCTAGGGAGCGGCCCCGCCGCGGCCGTTTCGACAGCGTCAACAAAG CTTGAGCCGGGGGCTCCGCTCGGCGTCGCCGGCAACAGGAAGGAGCCCGA TCGGGACTGGACGAGCAGCGGCGGGGGCGACAACAGCAACAGCACCAACA GCACCAACAGCAGTCGGCGACTCACGGTTGTCTGCCTGGGAGCCCGCGCC GAGAGCAGCATGCCGCCGGCTTTCTGGCGGGAGACGCTCTTCGCCCTCCC CGAGGTCTCCCACCTCACCCTGCACCTCATCGGCCCAGAGCTGAGCCTTC CCTCCGGCCTTGCGGCGGGGAGGCGGCGGCAGCAGGCACAGGCAGCGGCC GGCGATGGCGTCGGTTCGAGAGTCCGCGGCAGCCCCACCCCTACAACCAC TGCTGCTGTTTCCGTGGGCGCACGGACCGCGGACATTAGTTGGACCCGCG CTATGCTGGGGCGGGCGGCGAGCGGGTGTGTCGAAGGCGGAGAAGAGAGA GTCGCGGCTGGTTCAGGGGTGGGGGAGGGGTTGGGATCAGGGATGAGCTC GGACTCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGAGACAG TGAGAAAAGCGGACGCGTTCGTGCTGTTCAACCCTGGCCTTGGGCACCCC CACCTGAAGGAAGGATGGGACGGGGCGTTGAAACGCCTTCTCGCCACTGG AAAACCAATCGTCGTTTCGTGCCACAGCTGGAAGGACCTGGACAGGGACG CAAGATTGCTGCGCGAGGCTGGCGCGGTGTCCTGCCACTATCCCGGTTGG GCGGAGGAGGTGGAGGTGGAGGGGCGCGGCGGCGACGGACGAGGAGGAGG AGAGTCAGACAGCGTAACCCCAAGGGAAAACCCGTTCCGCAGCTTGATGG TGTCGGAAGACCCGCTCTCGCCGCCGGGAGCCGAGGAGGTGGTCTCGTGC AACTGGGGTGTGATGATTGTGAAGGGAGTGGAGGGCGGAAATATAGCCTG CAGCAGAAGCAGCGCTCCTCGGGGTAGTGGCGGAACTAGTGACGGTGGCA ACGGAACCAGTGGCAATTTGTAGCGACTGCTTCAAGAGCCACGCCCTGTT GGTTGTGTAGATGCGTGAGGCGTTCGTGGCTGTTGCGAAATGGGTGGCAG GAATCGTGTTCCACGTCGTGTTGATCCTCGCAAGTTCACTTTCCGAGTAC GTGTGCATCGAAGATTGCCATCGATTGCCCGTCGTTTTGTCTGGCATTGC GAGCCTACCGTGACAGCCACACCCTTTCTTTGCACTCTACGAAGTGCTGG ACTGTTTTCAATCCCGCCTTATTACTGCACAATGTGGTAATCCAGCGAGC AGAGTTTGTGTGCGTCAGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10152:1008..3427-

>mRNA_H-canaliculatus_F_contig10152.175.1 ID=mRNA_H-canaliculatus_F_contig10152.175.1|Name=mRNA_H-canaliculatus_F_contig10152.175.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2856bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10152:1008..3427- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGACAGGAAGATCGATCTCACGTTGTGGGTGTTACTGCACCAAATT
AGTCGGGCACGTTGGCCTTCGGCGTCAAGCATCTTCCGCTGCACAGAGGT
TGTCCGAAGCTCGGACACAGCAGAGGGAAAACGAGTCATGGGCGAAGCAG
AGCGGAGCTCGAGAGGTGTTGGCGCAGCCACCGTTCGGCGTGGAATGCGT
GGAGGAAAGGGCGTCGGCAGCAACACCAGGCATGCTGGACTCCGTTGAGA
TCTACCTTAAGATGAGGACAGGAAGATCGATCTCACGTTGTGGGTGTTAC
TGCACCAAATTAGTCGGGCACGTTGGCCTTCGGCGTCAAGCATCTTCCGC
TGCACAGAGGTTGTCCGAAGCTCGGACACAGCAGAGGGAAAACGAGTCAT
GGGCGAAGCAGAGCGGAGCTCGAGAGGTGTTGGCGCAGCCACCGTTCGGC
GTGGAATGCGTGGAGGAAAGGGCGTCGGCAGCAACACCAGGCATGCTGGA
CTCCGTTGAGATCTACCTTAAGGCTCGTCGATGGCATCACCCCGAAGGGC
CTGCTCGACGATTCCTATCGCACCTCCTGACCTACCCCCTCACGCTGGCG
GCCGGCTTGCATGGCGCCGGGCTAGGGAGCGGCCCCGCCGCGGCCGTTTC
GACAGCGTCAACAAAGCTTGAGCCGGGGGCTCCGCTCGGCGTCGCCGGCA
ACAGGAAGGAGCCCGATCGGGACTGGACGAGCAGCGGCGGGGGCGACAAC
AGCAACAGCACCAACAGCACCAACAGCAGTCGGCGACTCACGGTTGTCTG
CCTGGGAGCCCGCGCCGAGAGCAGCATGCCGCCGGCTTTCTGGCGGGAGA
CGCTCTTCGCCCTCCCCGAGGTCTCCCACCTCACCCTGCACCTCATCGGC
CCAGAGCTGAGCCTTCCCTCCGGCCTTGCGGCGGGGAGGCGGCGGCAGCA
GGCACAGGCAGCGGCCGGCGATGGCGTCGGTTCGAGAGTCCGCGGCAGCC
CCACCCCTACAACCACTGCTGCTGTTTCCGTGGGCGCACGGACCGCGGAC
ATTAGTTGGACCCGCGCTATGCTGGGGCGGGCGGCGAGCGGGTGTGTCGA
AGGCGGAGAAGAGAGAGTCGCGGCTGGTTCAGGGGTGGGGGAGGGGTTGG
GATCAGGGATGAGCTCGGACTCAGCCACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGACGAGACAGTGAGAAAAGCGGACGCGTTCGTGCTGTTCAACCC
TGGCCTTGGGCACCCCCACCTGAAGGAAGGATGGGACGGGGCGTTGAAAC
GCCTTCTCGCCACTGGAAAACCAATCGTCGTTTCGTGCCACAGCTGGAAG
GACCTGGACAGGGACGCAAGATTGCTGCGCGAGGCTGGCGCGGTGTCCTG
CCACTATCCCGGTTGGGCGGAGGAGGTGGAGGTGGAGGGGCGCGGCGGCG
ACGGACGAGGAGGAGGAGAGTCAGACAGCGTAACCCCAAGGGAAAACCCG
TTCCGCAGCTTGATGGTGTCGGAAGACCCGCTCTCGCCGCCGGGAGCCGA
GGAGGTGGTCTCGTGCAACTGGGGTGTGATGATTGTGAAGGGAGTGGAGG
GCGGAAATATAGCCTGCAGCAGAAGCAGCGCTCCTCGGGGTAGTGGCGGA
ACTAGTGACGGTGGCAACGGAACCAGTGGCAATTTGTAGGCTCGTCGATG
GCATCACCCCGAAGGGCCTGCTCGACGATTCCTATCGCACCTCCTGACCT
ACCCCCTCACGCTGGCGGCCGGCTTGCATGGCGCCGGGCTAGGGAGCGGC
CCCGCCGCGGCCGTTTCGACAGCGTCAACAAAGCTTGAGCCGGGGGCTCC
GCTCGGCGTCGCCGGCAACAGGAAGGAGCCCGATCGGGACTGGACGAGCA
GCGGCGGGGGCGACAACAGCAACAGCACCAACAGCACCAACAGCAGTCGG
CGACTCACGGTTGTCTGCCTGGGAGCCCGCGCCGAGAGCAGCATGCCGCC
GGCTTTCTGGCGGGAGACGCTCTTCGCCCTCCCCGAGGTCTCCCACCTCA
CCCTGCACCTCATCGGCCCAGAGCTGAGCCTTCCCTCCGGCCTTGCGGCG
GGGAGGCGGCGGCAGCAGGCACAGGCAGCGGCCGGCGATGGCGTCGGTTC
GAGAGTCCGCGGCAGCCCCACCCCTACAACCACTGCTGCTGTTTCCGTGG
GCGCACGGACCGCGGACATTAGTTGGACCCGCGCTATGCTGGGGCGGGCG
GCGAGCGGGTGTGTCGAAGGCGGAGAAGAGAGAGTCGCGGCTGGTTCAGG
GGTGGGGGAGGGGTTGGGATCAGGGATGAGCTCGGACTCAGCCACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGACGAGACAGTGAGAAAAGCGGACGCG
TTCGTGCTGTTCAACCCTGGCCTTGGGCACCCCCACCTGAAGGAAGGATG
GGACGGGGCGTTGAAACGCCTTCTCGCCACTGGAAAACCAATCGTCGTTT
CGTGCCACAGCTGGAAGGACCTGGACAGGGACGCAAGATTGCTGCGCGAG
GCTGGCGCGGTGTCCTGCCACTATCCCGGTTGGGCGGAGGAGGTGGAGGT
GGAGGGGCGCGGCGGCGACGGACGAGGAGGAGGAGAGTCAGACAGCGTAA
CCCCAAGGGAAAACCCGTTCCGCAGCTTGATGGTGTCGGAAGACCCGCTC
TCGCCGCCGGGAGCCGAGGAGGTGGTCTCGTGCAACTGGGGTGTGATGAT
TGTGAAGGGAGTGGAGGGCGGAAATATAGCCTGCAGCAGAAGCAGCGCTC
CTCGGGGTAGTGGCGGAACTAGTGACGGTGGCAACGGAACCAGTGGCAAT
TTGTAG
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