mRNA_H-canaliculatus_F_contig10150.173.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10150.173.1
Unique NamemRNA_H-canaliculatus_F_contig10150.173.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10150.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10150contigH-canaliculatus_F_contig10150:2911..3597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size655
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10150.173.1prot_H-canaliculatus_F_contig10150.173.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10150 2921..3423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928644.2970529-UTR-H-canaliculatus_F_contig10150:2910..29201622928644.2970529-UTR-H-canaliculatus_F_contig10150:2910..2920Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10150 2911..2920 +
1696845510.2582986-UTR-H-canaliculatus_F_contig10150:2910..29201696845510.2582986-UTR-H-canaliculatus_F_contig10150:2910..2920Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10150 2911..2920 +
1622928644.3488672-UTR-H-canaliculatus_F_contig10150:3423..35971622928644.3488672-UTR-H-canaliculatus_F_contig10150:3423..3597Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10150 3424..3597 +
1696845510.2951035-UTR-H-canaliculatus_F_contig10150:3423..35971696845510.2951035-UTR-H-canaliculatus_F_contig10150:3423..3597Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10150 3424..3597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928644.3188179-CDS-H-canaliculatus_F_contig10150:2920..32321622928644.3188179-CDS-H-canaliculatus_F_contig10150:2920..3232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10150 2921..3232 +
1696845510.2671936-CDS-H-canaliculatus_F_contig10150:2920..32321696845510.2671936-CDS-H-canaliculatus_F_contig10150:2920..3232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10150 2921..3232 +
1622928644.3351114-CDS-H-canaliculatus_F_contig10150:3264..34231622928644.3351114-CDS-H-canaliculatus_F_contig10150:3264..3423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10150 3265..3423 +
1696845510.2779155-CDS-H-canaliculatus_F_contig10150:3264..34231696845510.2779155-CDS-H-canaliculatus_F_contig10150:3264..3423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10150 3265..3423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10150.173.1

>prot_H-canaliculatus_F_contig10150.173.1 ID=prot_H-canaliculatus_F_contig10150.173.1|Name=mRNA_H-canaliculatus_F_contig10150.173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=157bp
MARACSWNWSVAVAAADSSICRHHPLFHSRCRCLARHPDRPRSTENVACS
RGDATLSFVQLSPPRRIHTQMPLNAETPLRSSPPRRQRVPTRASTPPFQE
ITRYCTTRCKARRRSTAPSVPDGAAWSGRVSKRMIHPGLAGGTTSGLPDH
DSPVTS*
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mRNA from alignment at H-canaliculatus_F_contig10150:2911..3597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10150.173.1 ID=mRNA_H-canaliculatus_F_contig10150.173.1|Name=mRNA_H-canaliculatus_F_contig10150.173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=687bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10150:2911..3597+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGGGACGAATGGCACGAGCTTGTTCTTGGAATTGGTCCGTCGCTGTGG
CTGCGGCTGATAGTAGCATATGCCGGCACCATCCCCTCTTCCACAGCCGT
TGCCGTTGTCTCGCGCGACACCCAGACCGCCCCCGCAGCACAGAAAACGT
CGCCTGCAGCCGTGGAGACGCCACCCTGTCCTTCGTCCAACTGTCGCCAC
CAAGACGAATCCACACGCAGATGCCCCTGAACGCAGAAACACCGCTACGC
TCCAGCCCCCCGCGTCGCCAGCGAGTGCCAACCCGAGCCTCAACACCCCC
GTTCCAGGAAATCACGCGGTACGCTACCCAGAGACGGGCACCGCTGACAC
GTAGTGCACGACAAGATGCAAGGCACGCCGACGCTCGACCGCTCCCTCCG
TTCCTGATGGGGCTGCCTGGTCCGGGAGGGTCTCGAAGCGGATGATTCAC
CCCGGCCTTGCGGGGGGCACAACGTCCGGCCTACCCGACCACGATTCGCC
CGTGACTTCTTAACAAAAGCACATGGGCACGCACGCTCCCTTCCTGCGGG
ACCCTCGAGAGGGTGCGCGCGTGCCCTCCATGGCCCTCGAAAAAAGTCTC
CTTGGTCTTCGCCGTGCGCACCACAGCCTACGGCGAAAGTGTCGCGGTCC
TTCTCGTATCGTTCCAAGCTGAAATGAAGGGTCACGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10150:2911..3597+

>mRNA_H-canaliculatus_F_contig10150.173.1 ID=mRNA_H-canaliculatus_F_contig10150.173.1|Name=mRNA_H-canaliculatus_F_contig10150.173.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=942bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10150:2911..3597+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACGAGCTTGTTCTTGGAATTGGTCCGTCGCTGTGGCTGCGGCTGA
TAGTAGCATATGCCGGCACCATCCCCTCTTCCACAGCCGTTGCCGTTGTC
TCGCGCGACACCCAGACCGCCCCCGCAGCACAGAAAACGTCGCCTGCAGC
CGTGGAGACGCCACCCTGTCCTTCGTCCAACTGTCGCCACCAAGACGAAT
CCACACGCAGATGCCCCTGAACGCAGAAACACCGCTACGCTCCAGCCCCC
CGCGTCGCCAGCGAGTGCCAACCCGAGCCTCAACACCCCCGTTCCAGGAA
ATCACGCGGTACATGGCACGAGCTTGTTCTTGGAATTGGTCCGTCGCTGT
GGCTGCGGCTGATAGTAGCATATGCCGGCACCATCCCCTCTTCCACAGCC
GTTGCCGTTGTCTCGCGCGACACCCAGACCGCCCCCGCAGCACAGAAAAC
GTCGCCTGCAGCCGTGGAGACGCCACCCTGTCCTTCGTCCAACTGTCGCC
ACCAAGACGAATCCACACGCAGATGCCCCTGAACGCAGAAACACCGCTAC
GCTCCAGCCCCCCGCGTCGCCAGCGAGTGCCAACCCGAGCCTCAACACCC
CCGTTCCAGGAAATCACGCGGTACTGCACGACAAGATGCAAGGCACGCCG
ACGCTCGACCGCTCCCTCCGTTCCTGATGGGGCTGCCTGGTCCGGGAGGG
TCTCGAAGCGGATGATTCACCCCGGCCTTGCGGGGGGCACAACGTCCGGC
CTACCCGACCACGATTCGCCCGTGACTTCTTAATGCACGACAAGATGCAA
GGCACGCCGACGCTCGACCGCTCCCTCCGTTCCTGATGGGGCTGCCTGGT
CCGGGAGGGTCTCGAAGCGGATGATTCACCCCGGCCTTGCGGGGGGCACA
ACGTCCGGCCTACCCGACCACGATTCGCCCGTGACTTCTTAA
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