mRNA_H-canaliculatus_F_contig10139.164.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A6H5L550_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L550_9PHAE) HSP 1 Score: 406 bits (1043), Expect = 6.990e-133 Identity = 255/423 (60.28%), Postives = 279/423 (65.96%), Query Frame = 1 Query: 4 ESGTNQLEVEEARVAVDTVVQEVSSRFRQLRKGRPGGLGXXXXTSTTAATTXXXXXXXXXXXXXXXIEGNGLPSRPAPTTWTPATPLPAALKER--GYGSTGNGGGGVGDLLGSSLEDAEGGEAGGFDA-ASPPSEGTA-----GREAATAQAPPAGGGAR--GVAGIGLGGTE-------IGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGG-----------------GVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFFWDVCDPSY 1170 +SGTNQ EVEEARVAVDTVVQEVSSRFR RK +P XXXX XXX P+RP + PLPAAL+ D+ SL DAEGGEAG F ASPP G++ R A A +G G+ G AG IGRPEDAVFPRELGRLP QLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPS+VSLKA EALA L G GG + + PF+RVPVETLAMLADR+LVLDTH+RVFVWSG+ VCG EFE VREACR F+GEAGSRFP A VVFLKDGTSWSRYLTSRLIPSHKDPV++QL+GFP LAGVP AEVE LRAKLPPTDDESYR+FFWDVCDP++ Sbjct: 2 QSGTNQHEVEEARVAVDTVVQEVSSRFRDFRKRQPAXXXXXXXXXXXXXXXXXXP-----------------PTRPERSP-----PLPAALRGSVXXXXXXXXXXXXXXDVGPPSLADAEGGEAGVFSTIASPPLSGSSTDPHSARAAGAAAVDDSGTGSSNGGRAGXXXXXXXXXXXXRGIGRPEDAVFPRELGRLPLQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSLVSLKAAEALACLTAAGNGSGGDSGNTAKERVPTASTSAAAAAAGLSFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRSFFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNF 402
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI) HSP 1 Score: 300 bits (767), Expect = 8.450e-88 Identity = 208/410 (50.73%), Postives = 229/410 (55.85%), Query Frame = 1 Query: 1 TESGTNQLEVEEARVAVDTVVQEVSSRFRQLRKGRPGGLGXXXXTSTTAATTXXXXXXXXXXXXXXXIEGNGLPSRPAPTTWTPATPLPAALKERG-------YGSTGNGGGGVGDLLGSSLEDAEGGEAGGFDAASPPSEGTAGREAATAQAPPAGGGARGVAGIGLGGTEIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGG--------GVEVSSRT-----LPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFFWDVCDPSY 1170 TESGTNQ EVEEARVAVDTVVQE+SSRFR RK +P XXXX XXXXXXXX P T + PLPAAL+ RG D+ SL DAEGGEAGGF + P GALEECLRMMEPS+VS KATEALA L G GG GV +S + PF+RVPVETLAMLADR+LVLDTH+RVFVWSG+ VCG EFE VREACRG+F+GEAGSRFP A VVFLKDGTSWSRYLTSRLIPSHKDPV++QL+GFP LAGVP AEVE LRAKLPPTDDESYR+FFWDVCDP++ Sbjct: 431 TESGTNQHEVEEARVAVDTVVQEISSRFRDFRKRQPAXXXXXXXXXXXXXXXXXXXXXXX----------------PVSTRPELSPPLPAALRGRGSXXXXXXXXXXXXXXXXXXDVGPPSLADAEGGEAGGFSTIASP---------------------------------------------------------------------------------GALEECLRMMEPSLVSFKATEALACLTAAGNGSGGDSGNTAKEGVPTASASAAAPPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNF 743
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A1E7F507_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F507_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.430e-32 Identity = 84/228 (36.84%), Postives = 127/228 (55.70%), Query Frame = 1 Query: 511 DAVFPRELGRLPRQLFHLRRGPLLGP-LLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTD---DESYRDFFWDVCDPSYTSGS 1182 + FP +L +L+HLRRGPL+ P +++ DD +R LFLR LE+CL+MM P+++S + ++S A DN P ETL++ D I+ D H+ +F+WSGA+ ++ +R+ + + +RFP + L+DG S SR T+RL PSH DP+D+Q+ FP L+ + PA + LR+K D DES+R +FW V S SGS Sbjct: 742 ELAFPPQLKETLNRLYHLRRGPLISPGPMRSMDDRAEIRGLFLRFPLEDCLKMMRPTVLSTGSMNGISS-AWDN---------------MVSFPAETLSLWDDSIVAADFHDTLFIWSGANCTATRYDGIRDKLKTHLLEVSMNRFPQPELHVLEDGDSMSRRFTARLAPSHADPIDNQIVHFPALSTLDPAALVKLRSKFKFYDSKSDESFRTWFWSVASASNNSGS 953
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A7S0EE52_9CRYP (Protein transport protein SEC23 (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE52_9CRYP) HSP 1 Score: 132 bits (331), Expect = 2.910e-28 Identity = 76/207 (36.71%), Postives = 103/207 (49.76%), Query Frame = 1 Query: 514 AVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESY 1134 + FP +L LP LF + GPLLG +L + DD LR +FL+ LE+ LR++ P + S + L F VPVE ++L DRIL+LD H +VFVWSG V G E++ VR+ RFPC V+ K+G S R+L RL PSH+D + G + A LL+ K P D+ESY Sbjct: 577 STFPAQLQGLPLYLFFAQTGPLLGSILNSEDDANVLRRIFLKSNLEDSLRILSPQLFSCSLND-------------------QNVLQFQEVPVEDTSLLPDRILLLDHHTQVFVWSGTQVAGAEYDLVRQTLLSSIKAWTAGRFPCPEVMEFKEGNSMCRWLECRLNPSHRDMASRGVMG-----SLTEAVKGLLQKKFVPMDNESY 759
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A7S2R010_9STRA (Protein transport protein SEC23 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R010_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.930e-28 Identity = 81/224 (36.16%), Postives = 113/224 (50.45%), Query Frame = 1 Query: 511 DAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRG----LFSGEAGS--RFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTD---DESYRDFFWDV 1155 D FP EL QL+HLRRG +LG LQ+ DD + R+LF+R LE+ L M+ P + + + S L VP TLA+ + ++ D ++ +FVWSG G E++ +RE C+ L S G RF + LK+G S SR LT+RL P+H DP QL FP LA + P +++ LR K D D S+R +FW V Sbjct: 59 DFAFPPELADALHQLYHLRRGSMLGHGLQSMDDRVMSRNLFIRLPLEDTLSMIAPVLWKCQLNN----------------DESPPLLLLDPVPCITLALWDNCVIAADHYDCLFVWSGRGTLGPEYDGLREKCKKHLLELVSNSNGDNHRFTPIKIYMLKEGDSMSRRLTTRLAPAHADPPQHQLASFPDLAHLTPTQLQTLRDKFRFYDAKADASFRRWFWSV 266
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A6A7GB13_9CRUS (Protein transport protein SEC23 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GB13_9CRUS) HSP 1 Score: 128 bits (321), Expect = 5.200e-27 Identity = 75/216 (34.72%), Postives = 113/216 (52.31%), Query Frame = 1 Query: 508 EDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFFWDV 1155 ++ L LP L+ LR+GP+LGPLLQN DD LR L+L +L++ +R+M P+++S + G VE +P+ LA+ ++RIL LD H VF+WSG +V G E++ R ACR + RFP + V K+ +S R+L RLIP+H D + Q + FP L + P L K T++ SYR + + + Sbjct: 588 KERSLEEHLATLPFMLYLLRQGPILGPLLQNPDDISYLRTLYLHASLQDTVRLMLPTLLSFNSL--------------GNVE---------ELPLSNLALQSNRILCLDHHSHVFIWSGKEVSGSEYDSYRNACRERSLVTSTRRFPQSRVFQFKENSSDERWLRCRLIPAHNDSLAQQNEDFPQLDEMEPYLRSKLLEKFMRTNEPSYRQYLFQI 780
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A835D5A4_9MAGN (Protein transport protein SEC23 n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D5A4_9MAGN) HSP 1 Score: 123 bits (309), Expect = 1.810e-25 Identity = 76/222 (34.23%), Postives = 111/222 (50.00%), Query Frame = 1 Query: 487 GTEIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVRE--ACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFF 1146 G+++ + + FP+EL LP LFHLRRGPLLG ++ + D+ LR+LFL + + LRM+ P + R GG F +P LAM +D +VLD VF+W GA++ +E ACR L RFP ++ K+G+S +RY SRLIP+H+DP +Q FP L + + L+ DD S+ +FF Sbjct: 665 GSQVPKSKLCRFPKELSLLPENLFHLRRGPLLGSIVGHEDERSVLRNLFLNASFDLSLRMVAPRCLMH---------------RDGGT--------FEELPAHDLAMQSDTAVVLDHGTDVFIWLGAELAAQEGRSAAALAACRTLSEELTELRFPAPRILAFKEGSSQARYFVSRLIPAHRDPPYEQEARFPQLRSLTTEQRAKLKNSFLHFDDPSFLEFF 863
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A2P6N5N0_9EUKA (Protein transport protein SEC23 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5N0_9EUKA) HSP 1 Score: 122 bits (306), Expect = 3.260e-25 Identity = 76/222 (34.23%), Postives = 117/222 (52.70%), Query Frame = 1 Query: 493 EIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCG----EEFEPVREACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESYRDFF 1146 ++ R V P L LP++LF L+RGPLLGP+LQ+ DD +R L ++ L++ LRM++P + + + SL G+ + L +P E LAM +D+IL+LD H VF W G V + E + + C + R+P + K+GTS +R++ RLIPSHKD ++QL+ FP + + + L +K TDD SY +F Sbjct: 525 KVSRRGGYVLPTHLSLLPKRLFMLQRGPLLGPILQHMDDIDYMRCLLIQANLQDSLRMIDPPLFMVDS-----SLRGE------------QPLELYPLPTEDLAMQSDKILLLDHHTEVFRWLGGMVGRIHQTADLEGILKRCDEYVESISRHRYPHPSSHSFKEGTSMARWIQCRLIPSHKDTTEEQLENFPQMDELTEEDRRRLLSKFHRTDDLSYLQWF 729
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: A0A7I8KT49_SPIIN (Protein transport protein SEC23 n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KT49_SPIIN) HSP 1 Score: 122 bits (306), Expect = 4.260e-25 Identity = 73/218 (33.49%), Postives = 112/218 (51.38%), Query Frame = 1 Query: 487 GTEIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVRE--ACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESY 1134 G+++ + + FP+EL LP LFHLRRGPLLG +L + D+ LR++FL + + LRM+ P + + +GG F +P LAM +D +VLD VF+W GA++ +E AC+ L RFP ++ K+G+S +RYL SR+IP+H+DP +Q FP L + P + L++ DD S+ Sbjct: 672 GSQMPKSKLYQFPKELSLLPENLFHLRRGPLLGSILGHEDERSILRNIFLNASFDLSLRMLAPRCLMHR-----------DGGN------------FEELPAYDLAMQSDTAIVLDHGTDVFIWLGAELAAQEGRSAAALAACKTLAEELTEQRFPAPRILSFKEGSSQARYLVSRMIPAHRDPPYEQEARFPQLRSLTPDQRTRLKSSFLHFDDPSF 866
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Match: UPI00098DEC09 (protein transport protein SEC23 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DEC09) HSP 1 Score: 120 bits (302), Expect = 1.290e-24 Identity = 76/218 (34.86%), Postives = 112/218 (51.38%), Query Frame = 1 Query: 487 GTEIGRPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLADRILVLDTHERVFVWSGADVCGEEFEPVRE--ACRGLFSGEAGSRFPCATVVFLKDGTSWSRYLTSRLIPSHKDPVDDQLKGFPGLAGVPPAEVELLRAKLPPTDDESY 1134 G+++ + + FP+EL LP LFHLRRGPLLG ++ + D+ LR+LFL + + LRM+ P + R GG F +P LAM ++ +VLD VF+W GA++ +E + ACR L +RFP ++ K+G+S +RY SRLIP+HKDP +Q FP L + P + L+A DD S+ Sbjct: 657 GSQMPKSKLFRFPKELSLLPENLFHLRRGPLLGNIVGHEDERSVLRNLFLNASFDLSLRMLAPRCLMH---------------REGGT--------FEELPAYDLAMQSNTAVVLDHGTDVFIWLGAELASQEGKSAAALAACRTLAEELTENRFPAPRILSFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRTLTPDQRARLKASFLHFDDYSF 851 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10139.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10139.164.1 >prot_H-canaliculatus_F_contig10139.164.1 ID=prot_H-canaliculatus_F_contig10139.164.1|Name=mRNA_H-canaliculatus_F_contig10139.164.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=175bp MMEPSMVSLKATEALASLAGDNGGRGGGVEVSSRTLPFARVPVETLAMLAback to top mRNA from alignment at H-canaliculatus_F_contig10139:140..3778+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10139.164.1 ID=mRNA_H-canaliculatus_F_contig10139.164.1|Name=mRNA_H-canaliculatus_F_contig10139.164.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3639bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10139:140..3778+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10139:140..3778+ >mRNA_H-canaliculatus_F_contig10139.164.1 ID=mRNA_H-canaliculatus_F_contig10139.164.1|Name=mRNA_H-canaliculatus_F_contig10139.164.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1050bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10139:140..3778+ (Hapterophycus canaliculatus Oshoro5f female)back to top |