Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1294 |
| Cds size | 969 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928643.1214273-UTR-H-canaliculatus_F_contig10138:815..988 | 1622928643.1214273-UTR-H-canaliculatus_F_contig10138:815..988 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10138 816..988 - |
| 1696845509.7444355-UTR-H-canaliculatus_F_contig10138:815..988 | 1696845509.7444355-UTR-H-canaliculatus_F_contig10138:815..988 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10138 816..988 - |
| 1622928643.1733773-UTR-H-canaliculatus_F_contig10138:2867..3019 | 1622928643.1733773-UTR-H-canaliculatus_F_contig10138:2867..3019 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10138 2868..3019 - |
| 1696845509.7727375-UTR-H-canaliculatus_F_contig10138:2867..3019 | 1696845509.7727375-UTR-H-canaliculatus_F_contig10138:2867..3019 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10138 2868..3019 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928643.1368358-CDS-H-canaliculatus_F_contig10138:988..1443 | 1622928643.1368358-CDS-H-canaliculatus_F_contig10138:988..1443 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10138 989..1443 - |
| 1696845509.7529004-CDS-H-canaliculatus_F_contig10138:988..1443 | 1696845509.7529004-CDS-H-canaliculatus_F_contig10138:988..1443 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10138 989..1443 - |
| 1622928643.1533074-CDS-H-canaliculatus_F_contig10138:2353..2867 | 1622928643.1533074-CDS-H-canaliculatus_F_contig10138:2353..2867 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10138 2354..2867 - |
| 1696845509.7645512-CDS-H-canaliculatus_F_contig10138:2353..2867 | 1696845509.7645512-CDS-H-canaliculatus_F_contig10138:2353..2867 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10138 2354..2867 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10138.163.1 >prot_H-canaliculatus_F_contig10138.163.1 ID=prot_H-canaliculatus_F_contig10138.163.1|Name=mRNA_H-canaliculatus_F_contig10138.163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=323bp
MIWVACNPFRLSVESSHRLLLLKKYPGAANVHGNRMCSTYTAASSRRDHR
ISTSFATLPPHISVDSCTLRPYTLQNKPHAEPCQVVSSEDVAKEVLKHLE
PSVAAAAREGAERGRGGGGSVGASMAWGSAPILSLFKFSSPKDWTYKDDI
LLRATHLVVGGSADIDCNAFQAKIVKSFTPARSKLSSNMREPMLKSMTTR
LEQFAKFLPALVQQEEVEYLSEFVLQELEREKSGEGDDEEDGDIGSFVDD
SVSLDHITNLFPRFWKAVSRSQKRKRRRPRSQVLFRHSRDLWVLLWCFVV
LFQQGGDCICVELWCRNPGRWV* back to topmRNA from alignment at H-canaliculatus_F_contig10138:816..3019- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10138.163.1 ID=mRNA_H-canaliculatus_F_contig10138.163.1|Name=mRNA_H-canaliculatus_F_contig10138.163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2204bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10138:816..3019- (Hapterophycus canaliculatus Oshoro5f female)
GTCATAGCCCAGGCGCTGGAAGCACGAGCGTCAGCCACGTTTCGCGGCCA
CCTAGGACATATCCTTCTCCAGCAGAGCGGGGTTCAAGTAAGCGAAGGAC
GGCATGGTACCCAATGCAAAAATAAACGGCAGATTCCGGTCCCGGGGATT
GCATGATCTGGGTAGCGTGTAACCCTTTTCGTCTGTCGGTTGAATCATCC
CACCGCCTGCTGCTGTTAAAAAAGTACCCCGGCGCCGCCAACGTGCATGG
AAATCGAATGTGTAGTACCTACACCGCCGCCAGCTCTCGTCGTGATCATC
GCATCTCGACCTCCTTCGCGACGCTGCCGCCGCACATATCGGTGGACAGC
TGTACCCTCCGCCCTTACACCCTACAAAATAAACCTCACGCCGAACCCTG
TCAGGTGGTCTCTTCTGAGGATGTTGCGAAGGAGGTGTTGAAACACCTTG
AGCCGAGCGTTGCAGCCGCGGCACGGGAGGGGGCGGAGAGAGGGCGCGGA
GGCGGGGGTTCAGTTGGCGCCTCTATGGCGTGGGGTTCGGCTCCTATCTT
GTCTCTGTTCAAGTTCAGCTCTCCGAAGGACTGGACCTATAAGGACGACA
TCTTGCTTCGAGCTACGCACTTGGTCGTAGGGGGGAGCGCCGACATAGAC
TGCAATGCGTTCCAAGGTGTGGTACCAGGACTACCGTATGTGACTCAAGA
TATCACACCTACATGAGAAACCACACCCCCCACAGGATACGACACCCCAA
TGATAACATGCTAGTTTACGCCGCACATATTTAGGGGGCTCCTCCTTCTT
GTTGCCGGGGTGACAGCATCTGTGCCTGGGCATCATACACAACCACATGG
AATGCAACGTTGTTTGTGGCTCGTGGTGTAGGTTTGTGGTTTGTGGTGTT
GGATTTTTGGTCATGTTCTTTGCGTGATTCTTCTGGTCGTACAAAAGGAA
GGTACGCAGCTGCCAACTTTCCAGTGAGGGGAGCAGGGCGGGTTTTATTC
GAAACTTTCTTTGGCGTTGAAGGGGGTGGTCATCGCCGAGGTCGTGGGGT
CAGGATTTTCGTTGCTTCGATTAAGCCCCTTTGTTTTAACCCTAACCCCT
TGCTACCACTTAAGGCAGGCCCCTACTGTGCGGGGCAGCTGCTCGTGTTC
GTGCAGGCACTGCTATCACACACCCGCAGTATCACACCCTTTCAAATGTG
CTGCAGCAGCGGTTCAATTCTACAAGCAGTTTATCACATCCCCTCATTTA
ATCACAATCCCAAGCACACCCTGCTGTAGGTGTTCGGACGTGCCGTCATT
CCCGTGGTCCATCACACCCCTTAGGGGTCCCTGCGAGCTTCACTTTACCG
CCCGAAGGGTACATAAGATACCACACCCCCCACAGAACATCACACCCGGT
GTTATTTTGTGTTATAGGGAGTATGGCGTGTCCTCGAAACCTGTTCATGT
AGATATGGACACATCTTGGCCGCCGCCCTACCTGCGGGTCGCAGTCCATA
CTGCCGAGGTTTATGCCAAAATCAACATCGACTGATCGCTCCGCAAATTT
TGTTTTGCTTCTCATGCGTCACGCAGCAAAAATCGTCAAAAGCTTCACAC
CGGCGCGTTCGAAGCTGTCGAGCAACATGCGTGAACCGATGCTCAAGTCC
ATGACCACGAGGCTCGAGCAGTTCGCCAAGTTCCTCCCAGCGCTCGTTCA
GCAAGAAGAGGTGGAGTACCTGTCCGAGTTCGTCCTTCAGGAACTGGAGC
GGGAGAAGAGCGGCGAAGGGGACGACGAAGAAGACGGCGACATCGGCTCG
TTCGTCGACGACTCGGTCTCGCTCGACCACATCACAAATCTTTTCCCTCG
GTTTTGGAAGGCGGTGAGCCGATCACAAAAGAGGAAACGGAGGCGACCCC
GTAGTCAAGTTTTGTTTCGCCATTCCCGTGACCTTTGGGTTTTGCTGTGG
TGTTTTGTAGTGTTGTTCCAGCAGGGTGGCGATTGTATCTGCGTTGAGTT
ATGGTGCCGAAATCCCGGGAGATGGGTATGATTGAGCCACCGCTGAACAG
CGATGACGAGCCAAAGCACGGGGCGGGAAGTACCCGTACCGCGTGATATC
CTAGAGCTCTCTGCCCTTGCCATTTTTTGTTTCCTTGAAAAGGAGTACTC
CTTTCGTTCCCTTTGCAGCATTTCGTTTTGTGGATGTTCTCTCTTTGCGT
TGCC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10138:816..3019- >mRNA_H-canaliculatus_F_contig10138.163.1 ID=mRNA_H-canaliculatus_F_contig10138.163.1|Name=mRNA_H-canaliculatus_F_contig10138.163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1938bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10138:816..3019- (Hapterophycus canaliculatus Oshoro5f female)
ATGATCTGGGTAGCGTGTAACCCTTTTCGTCTGTCGGTTGAATCATCCCA
CCGCCTGCTGCTGTTAAAAAAGTACCCCGGCGCCGCCAACGTGCATGGAA
ATCGAATGTGTAGTACCTACACCGCCGCCAGCTCTCGTCGTGATCATCGC
ATCTCGACCTCCTTCGCGACGCTGCCGCCGCACATATCGGTGGACAGCTG
TACCCTCCGCCCTTACACCCTACAAAATAAACCTCACGCCGAACCCTGTC
AGGTGGTCTCTTCTGAGGATGTTGCGAAGGAGGTGTTGAAACACCTTGAG
CCGAGCGTTGCAGCCGCGGCACGGGAGGGGGCGGAGAGAGGGCGCGGAGG
CGGGGGTTCAGTTGGCGCCTCTATGGCGTGGGGTTCGGCTCCTATCTTGT
CTCTGTTCAAGTTCAGCTCTCCGAAGGACTGGACCTATAAGGACGACATC
TTGCTTCGAGCTACGCACTTGGTCGTAGGGGGGAGCGCCGACATAGACTG
CAATGCGTTCCAAGATGATCTGGGTAGCGTGTAACCCTTTTCGTCTGTCG
GTTGAATCATCCCACCGCCTGCTGCTGTTAAAAAAGTACCCCGGCGCCGC
CAACGTGCATGGAAATCGAATGTGTAGTACCTACACCGCCGCCAGCTCTC
GTCGTGATCATCGCATCTCGACCTCCTTCGCGACGCTGCCGCCGCACATA
TCGGTGGACAGCTGTACCCTCCGCCCTTACACCCTACAAAATAAACCTCA
CGCCGAACCCTGTCAGGTGGTCTCTTCTGAGGATGTTGCGAAGGAGGTGT
TGAAACACCTTGAGCCGAGCGTTGCAGCCGCGGCACGGGAGGGGGCGGAG
AGAGGGCGCGGAGGCGGGGGTTCAGTTGGCGCCTCTATGGCGTGGGGTTC
GGCTCCTATCTTGTCTCTGTTCAAGTTCAGCTCTCCGAAGGACTGGACCT
ATAAGGACGACATCTTGCTTCGAGCTACGCACTTGGTCGTAGGGGGGAGC
GCCGACATAGACTGCAATGCGTTCCAAGCAAAAATCGTCAAAAGCTTCAC
ACCGGCGCGTTCGAAGCTGTCGAGCAACATGCGTGAACCGATGCTCAAGT
CCATGACCACGAGGCTCGAGCAGTTCGCCAAGTTCCTCCCAGCGCTCGTT
CAGCAAGAAGAGGTGGAGTACCTGTCCGAGTTCGTCCTTCAGGAACTGGA
GCGGGAGAAGAGCGGCGAAGGGGACGACGAAGAAGACGGCGACATCGGCT
CGTTCGTCGACGACTCGGTCTCGCTCGACCACATCACAAATCTTTTCCCT
CGGTTTTGGAAGGCGGTGAGCCGATCACAAAAGAGGAAACGGAGGCGACC
CCGTAGTCAAGTTTTGTTTCGCCATTCCCGTGACCTTTGGGTTTTGCTGT
GGTGTTTTGTAGTGTTGTTCCAGCAGGGTGGCGATTGTATCTGCGTTGAG
TTATGGTGCCGAAATCCCGGGAGATGGGTATGACAAAAATCGTCAAAAGC
TTCACACCGGCGCGTTCGAAGCTGTCGAGCAACATGCGTGAACCGATGCT
CAAGTCCATGACCACGAGGCTCGAGCAGTTCGCCAAGTTCCTCCCAGCGC
TCGTTCAGCAAGAAGAGGTGGAGTACCTGTCCGAGTTCGTCCTTCAGGAA
CTGGAGCGGGAGAAGAGCGGCGAAGGGGACGACGAAGAAGACGGCGACAT
CGGCTCGTTCGTCGACGACTCGGTCTCGCTCGACCACATCACAAATCTTT
TCCCTCGGTTTTGGAAGGCGGTGAGCCGATCACAAAAGAGGAAACGGAGG
CGACCCCGTAGTCAAGTTTTGTTTCGCCATTCCCGTGACCTTTGGGTTTT
GCTGTGGTGTTTTGTAGTGTTGTTCCAGCAGGGTGGCGATTGTATCTGCG
TTGAGTTATGGTGCCGAAATCCCGGGAGATGGGTATGA back to top
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