Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 790 |
| Cds size | 429 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928642.809965-UTR-H-canaliculatus_F_contig10134:4359..4555 | 1622928642.809965-UTR-H-canaliculatus_F_contig10134:4359..4555 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10134 4360..4555 + |
| 1696845509.5776565-UTR-H-canaliculatus_F_contig10134:4359..4555 | 1696845509.5776565-UTR-H-canaliculatus_F_contig10134:4359..4555 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10134 4360..4555 + |
| 1622928642.8399246-UTR-H-canaliculatus_F_contig10134:4984..5149 | 1622928642.8399246-UTR-H-canaliculatus_F_contig10134:4984..5149 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10134 4985..5149 + |
| 1696845509.60421-UTR-H-canaliculatus_F_contig10134:4984..5149 | 1696845509.60421-UTR-H-canaliculatus_F_contig10134:4984..5149 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10134 4985..5149 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928642.823922-CDS-H-canaliculatus_F_contig10134:4555..4984 | 1622928642.823922-CDS-H-canaliculatus_F_contig10134:4555..4984 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10134 4556..4984 + |
| 1696845509.5948474-CDS-H-canaliculatus_F_contig10134:4555..4984 | 1696845509.5948474-CDS-H-canaliculatus_F_contig10134:4555..4984 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10134 4556..4984 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10134.160.1 >prot_H-canaliculatus_F_contig10134.160.1 ID=prot_H-canaliculatus_F_contig10134.160.1|Name=mRNA_H-canaliculatus_F_contig10134.160.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=143bp
MKGKHKGGHDRFRHHHRHHRGAHIVNGCLKGHVVDVAFWPRVGSFGPCSP
EEYIVQFLPNLDGSGSSVRTSSAVELPPYSKNSSKEPGLCSVIFPSMFYR
RTRRSRRFTGKLSCYRLPPRAVPPKNEIPSTVRTTIVVLATV* back to topmRNA from alignment at H-canaliculatus_F_contig10134:4360..5149+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10134.160.1 ID=mRNA_H-canaliculatus_F_contig10134.160.1|Name=mRNA_H-canaliculatus_F_contig10134.160.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=790bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10134:4360..5149+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGCTTTCGGTAGACGGGGGCGTGGGACTAATCATGCAGCAGTAGCACA
AGTTTCAAGCACCTTTAATGCACCCCCGTATGGTCTGCACAGCCCAGCGG
ATTTATTCGTGCACACCCGTCGGACCAGAGTAAGACTACCGTTCAAAGAG
ACCATATTACATCAACACTTTCGCCAAATGGGCCCACGTTTGAGGAATGA
AGGGCAAGCACAAGGGGGGACATGATCGATTTCGACACCATCATCGACAC
CATCGTGGGGCGCACATCGTGAATGGTTGTTTGAAGGGGCACGTGGTAGA
CGTCGCCTTTTGGCCGCGCGTTGGCTCCTTCGGGCCTTGCTCTCCAGAAG
AATACATTGTGCAGTTTTTGCCAAACTTGGACGGGTCAGGCTCAAGTGTC
AGAACAAGTTCTGCGGTTGAGCTGCCTCCGTACAGTAAAAATAGCTCGAA
AGAACCAGGGTTGTGTTCGGTTATTTTTCCGTCGATGTTCTACCGCCGTA
CACGACGGTCCCGGCGATTCACCGGCAAATTGTCGTGTTACCGTCTACCG
CCAAGGGCGGTACCGCCGAAAAACGAGATACCGTCTACCGTCAGGACAAC
TATCGTCGTCCTGGCTACCGTCTGATAAAATACCGTTAGATTCACGATTC
TACCGTCTGGCGGTCCATGAATACCGTCAGATTCACCATCACCGTCCCCC
GCCATCATAAATACCGGCAACCGTTAGATACCGTCAGAAAAGTACCGACA
GATTCGCTATTACCGTCTACCGGCAACTCTAGGTATCGCC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10134:4360..5149+ >mRNA_H-canaliculatus_F_contig10134.160.1 ID=mRNA_H-canaliculatus_F_contig10134.160.1|Name=mRNA_H-canaliculatus_F_contig10134.160.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=858bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10134:4360..5149+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGGGCAAGCACAAGGGGGGACATGATCGATTTCGACACCATCATCG
ACACCATCGTGGGGCGCACATCGTGAATGGTTGTTTGAAGGGGCACGTGG
TAGACGTCGCCTTTTGGCCGCGCGTTGGCTCCTTCGGGCCTTGCTCTCCA
GAAGAATACATTGTGCAGTTTTTGCCAAACTTGGACGGGTCAGGCTCAAG
TGTCAGAACAAGTTCTGCGGTTGAGCTGCCTCCGTACAGTAAAAATAGCT
CGAAAGAACCAGGGTTGTGTTCGGTTATTTTTCCGTCGATGTTCTACCGC
CGTACACGACGGTCCCGGCGATTCACCGGCAAATTGTCGTGTTACCGTCT
ACCGCCAAGGGCGGTACCGCCGAAAAACGAGATACCGTCTACCGTCAGGA
CAACTATCGTCGTCCTGGCTACCGTCTGAATGAAGGGCAAGCACAAGGGG
GGACATGATCGATTTCGACACCATCATCGACACCATCGTGGGGCGCACAT
CGTGAATGGTTGTTTGAAGGGGCACGTGGTAGACGTCGCCTTTTGGCCGC
GCGTTGGCTCCTTCGGGCCTTGCTCTCCAGAAGAATACATTGTGCAGTTT
TTGCCAAACTTGGACGGGTCAGGCTCAAGTGTCAGAACAAGTTCTGCGGT
TGAGCTGCCTCCGTACAGTAAAAATAGCTCGAAAGAACCAGGGTTGTGTT
CGGTTATTTTTCCGTCGATGTTCTACCGCCGTACACGACGGTCCCGGCGA
TTCACCGGCAAATTGTCGTGTTACCGTCTACCGCCAAGGGCGGTACCGCC
GAAAAACGAGATACCGTCTACCGTCAGGACAACTATCGTCGTCCTGGCTA
CCGTCTGA back to top
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