mRNA_H-canaliculatus_F_contig10130.156.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: A0A6H5L5B7_9PHAE (Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B7_9PHAE) HSP 1 Score: 522 bits (1345), Expect = 6.650e-167 Identity = 476/756 (62.96%), Postives = 508/756 (67.20%), Query Frame = 1 Query: 52 AVEGFCDLQLEGVGLLLVLLGTQVYGPPPPSVPSSSAAWNSSPRGRDGEQRTTGTAADNVFLDALLREASSSGGGC--RSRSWGIALPRAVLGWFIRRPAAPPGSVASALVNALRAPPLPATSRGGSTPFGRSTADGRRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAPLALPTTVNAAENSGGLTSEARRLLAAYPGAFVLLVARALLYVVTLRGLMGAVGGSGSGNGGSLLGGGDADWKGEGGEEGGREAEVTEAPRGAPKEPGEWEGHRVLAADGG--GXXXXXXEVAGGKGRGPRK-ISPLADRGVLLLLVLLRNRARTNPFRAAVASCVDAELDDHLPPDTFGGSGGRVVSAAGVSRPSXXXXXXXXXXXXXXXXXXXPMRVPFRGLFEAFASTLEAPPPASSSRVVLVGGW-----GHGGGEVESVGREGVALLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRWIQGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAMAEVDLADGNERGXXXXXXXXXXXXXGLSDVQELCGEVARVLFLFVWTCTRPRRLGGNVELLYALLHEQVC 2289
+VEGF DLQLE VGLLLVLLGTQ YGPPPP+ W SSP GR DNVFLDAL R WG ALPRAVLGWF+RRPAAPPGS +SALVNAL P P +SR S PF RS A G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAAYPGA VLLVARALL+VVTLRGL G VG D GE GE AEVTEAP GAPKEPGEWEG A D G G XXXXX R PRK ISP+ADRGVLLLLVLL NR+R+N F AAVA+ VDA+L+D+LP +FG XXXXXXXXXXXXXXXXX MRV FRGLFEAFASTLE P +S G GE ESVGREGVALLLYSLLQANPGFLRAAV+RSDADALLLPLLRTLHD AS EQXXXXXXXXXXXXXXXXXXXXXXX PSPP+LYVPAIV+LLF QD+AFNRQSFRQVVQ +V+ G PA R+L+G++LGSL+V+SILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQ YAAERLV+VL+AASRRWIQGA++ XXXXXXXXXXXXX XXXXXXXXXXXXX DVQELCGEVARVLFLFVW+CTRPRRLG NVELLYALLHEQ C
Sbjct: 256 SVEGFSDLQLEAVGLLLVLLGTQAYGPPPPT-------WGSSP-GRXXXXXXXXX-VDNVFLDALXXXXXXXXXXXXXRPHGWGCALPRAVLGWFVRRPAAPPGSASSALVNALWTKPPP-SSRRVSIPFRRSLAGGGAIADGQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------XXLAAYPGALVLLVARALLHVVTLRGLFGMVGXXXXXXXXXXXXXLLLDGDGEKGE-----AEVTEAPGGAPKEPGEWEGRWSQAMDDGEGGCXXXXXXXXXXXXRRPRKKISPIADRGVLLLLVLLHNRSRSNAFLAAVATFVDADLEDNLPGGSFG-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXATRMRVSFRGLFEAFASTLEGPSSSSXXXXXXXXXXXXXXDGAAAGEAESVGREGVALLLYSLLQANPGFLRAAVVRSDADALLLPLLRTLHDCASPEQXXXXXXXXXXXXXXXXXXXXXXX------PSPPSLYVPAIVLLLFCQDSAFNRQSFRQVVQADVQLG-PA-RNLRGSSLGSLIVLSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQPYAAERLVTVLVAASRRWIQGATSAAXXXXXXXXXXXXX---------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVQELCGEVARVLFLFVWSCTRPRRLGSNVELLYALLHEQAC 937
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: D8LKU0_ECTSI (Dymeclin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU0_ECTSI) HSP 1 Score: 480 bits (1236), Expect = 4.270e-157 Identity = 394/574 (68.64%), Postives = 417/574 (72.65%), Query Frame = 1 Query: 631 LTSEARRLLAAYPGAFVLLVARALLYVVTLRGLMGAVGGSGSGNGGSLLGGGDADWKGEGGEEGGREAEVTEAPRGAPKEPGEWEGHRVLAADGG-GXXXXXXEVAGGKGRGPRK-ISPLADRGVLLLLVLLRNRARTNPFRAAVASCVDAELDDHLPPDTFGGSGGRVVSAAGVSRPSXXXXXXXXXXXXXXXXXXXPMRVPFRGLFEAFASTLEAPPPASSSRVVLVGGWGH--------GGGEVESVGREGVALLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRWIQGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------GGAMAEVDLADGNERGXXXXXXXXXXXXXGLSDVQELCGEVARVLFLFVWTCTRPRRLGGNVELLYALLHEQVCL 2292
+TSEARRLLAAYPGA VLLVARALLYVVTLRGL+G VGG LL D D GEEG EAEVTEAP GAPKEPGEWEGH A D G GXXXXXX R PRK ISPLADRGVLLLLVLL NR+R N FRAAVAS VDA+L+D+LP +FG XXXXXXXXX MRV FRGLFEAFASTLE SSS GE ESVGREGVALLLYSLLQANPGFLRAAV+RSDADALLLPLLRTLHD AS EQXXXXXXXXXXXXXXXXXX +PSPPALYVPAIV+LLF QD+AFNRQSFRQVVQ +V+WG A R+L+G++LGSLVV+SILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQ YAAERLV+VL+AASRRWIQGA++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GGAM EV G RG GLSDVQELCGEVARVLFLFVW+CTRPRRLG NVELLYALLHEQ L
Sbjct: 1 MTSEARRLLAAYPGALVLLVARALLYVVTLRGLIGMVGGXXXXXXXLLL---DGD-----GEEG--EAEVTEAPGGAPKEPGEWEGHWSPAMDDGEGXXXXXXXXXXXXXRRPRKKISPLADRGVLLLLVLLHNRSRGNAFRAAVASFVDADLEDNLPGGSFGXXXXXXXXXXXXXXXXXXXXXXXXXATR--------MRVSFRGLFEAFASTLEG---RSSSXXXXXXXXXXXXXXXXXXAAGEAESVGREGVALLLYSLLQANPGFLRAAVVRSDADALLLPLLRTLHDCASPEQXXXXXXXXXXXXXXXXXXVGV-------DPSPPALYVPAIVLLLFCQDSAFNRQSFRQVVQADVQWG--AARNLRGSSLGSLVVLSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQPYAAERLVAVLVAASRRWIQGATSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVVSENGRDPMAAPPGGAMPEV----GGGRG-------------GLSDVQELCGEVARVLFLFVWSCTRPRRLGSNVELLYALLHEQAAL 527
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: A0A7S3QB77_9STRA (Dymeclin n=4 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QB77_9STRA) HSP 1 Score: 116 bits (291), Expect = 3.350e-24 Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 1 Query: 1366 ALLLYSLLQANPGFLRAAVIRS--DADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRW 1914
+L+LY+LLQ++P F ++ +RS D + L+LPLLRTL+ +S+ SP LYV I+ L+FSQDA+F SFR+ V W R LK +LGSL+V+S+LRC+ NL R++D +LL NC AVL+NL+P +L +YA+ RLVSVL+A +R+
Sbjct: 84 SLVLYTLLQSSPIFAKSLAVRSGNDLENLVLPLLRTLYVSSSSSHHISGRTTMSRSKGTEVQVMERPFR------SPSQLYVILILFLIFSQDASFPTDSFRRSNIPHVVWF--KERQLKNISLGSLLVLSLLRCITFNLNRMQDPFLLSNCCAVLLNLSPNIANLHSYASMRLVSVLLATMKRY 260
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: A0A7S2URJ0_9STRA (Dymeclin n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URJ0_9STRA) HSP 1 Score: 116 bits (290), Expect = 3.580e-23 Identity = 104/342 (30.41%), Postives = 147/342 (42.98%), Query Frame = 1 Query: 976 SPLADRGVLLLLVLLRNRA-------RTNPFRAAVASCVDAELD---------------DHLPPDTFGGSG---GRVVSAAGVSRPSXXXXXXXXXXXXXXXXXXXP----MRVPFRGLFEAFASTLEAPPPASSSRVVLVGGWGHGGGEVESVGREGVALLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRW 1914
SP+AD G L L+LL N NPFR ++S D + D L D G+G +V+ V + P + V F LFE+F + EV S L+LYSLLQ++P F + +RSD D L+LPLLRTL+ + Q SP LY+ I++LLFSQDA+F +FR+V + W R LK LGS++++S+LR L NL RL+DG+LL NC AVL+NL+P ++ Y A RL S+ ++ R++
Sbjct: 152 SPIADLGSTLFLILLNNHRAARGGSNENNPFRLEISSLDDNRWEGPEKTISTNKMRTPPDVLAHDNVNGNGVLDSGIVNGDHVLEFAPSTESMSLLDQHTVVSAPVPRHMILSVNFESLFESFGYIVHT--------------------EVGS-------LVLYSLLQSSPIFAASVAVRSDLDTLVLPLLRTLYYSSVVTQYHHPASYKQSTPNDLSRSCPFR--------SPSQLYLILILLLLFSQDASFGPDAFRRVTIPSLPWY--KERKLKDINLGSVLILSLLRALTFNLSRLRDGFLLSNCCAVLLNLSPHMVNINEYTAMRLGSITMSLMRKY 456
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: A0A1Z5KGG4_FISSO (Dymeclin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGG4_FISSO) HSP 1 Score: 115 bits (288), Expect = 9.340e-23 Identity = 73/185 (39.46%), Postives = 102/185 (55.14%), Query Frame = 1 Query: 1366 ALLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRWIQ 1920
ALLLY++LQA+P F A +RSD D ++LPLLRTL+ +S S LYV I++L+FSQD +F +FR++ + W R+LK +LGS++V+S+LR L NL RL D +LL NC AVL+NLAP L YAA RL +V +A +R+ +
Sbjct: 488 ALLLYTILQASPKFSEAIAVRSDLDTIVLPLLRTLYFSSSTRFYTASTSSKGKDGEAAKKLNIRNCPFR----SQSQLYVMIILLLIFSQDTSFGADAFRRISIQSIPWY--KERNLKTISLGSMIVLSMLRSLTFNLNRLHDPFLLSNCCAVLLNLAPSVVELHDYAAMRLSAVAVACIKRYAE 666
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: A0A1Y1HYP7_KLENI (Dymeclin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYP7_KLENI) HSP 1 Score: 107 bits (268), Expect = 1.940e-20 Identity = 70/188 (37.23%), Postives = 103/188 (54.79%), Query Frame = 1 Query: 1369 LLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRWIQGASA 1932
LLLYSLL ANP FL ++R+D D LLLPLL L+ A+ +P +Y+ I++L+ SQDA+FN + + G V W R L+ +LGSL+V+ ++R + +NL +L+D YL NCLA L N+AP A HL AYAA+RLVS+ ++++ + + A
Sbjct: 363 LLLYSLLHANPAFLEYVLVRTDLDTLLLPLLEVLYCAAAR--------------------------------TPNQIYMLLIILLILSQDASFNANVHKLPLTG-VPWY--RERLLQRTSLGSLMVVILIRTVKYNLSKLRDVYLHTNCLATLANMAPHAHHLNAYAAQRLVSLFDMLAKKYTRLSDA 515
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: A0A087HKW0_ARAAL (Dymeclin (Fragment) n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HKW0_ARAAL) HSP 1 Score: 104 bits (259), Expect = 5.930e-20 Identity = 66/186 (35.48%), Postives = 98/186 (52.69%), Query Frame = 1 Query: 1357 EGVALLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRW 1914
EG LLLYSLLQ N F ++R+D D +L+P+L TL++ + S +Y+ IV+L+ SQD++FN S +++ V W L +LGSL+V+ ++R + HNL +L+D YL CLA L N+AP A HL AYA++RLVS+ SR++
Sbjct: 89 EGAVLLLYSLLQGNSDFKEYVLVRTDLDTMLMPILETLYNASKRT-------------------------------SSNQIYMMLIVLLILSQDSSFN-SSVHKMILPSVPWY--KEHLLHQTSLGSLMVIILIRTVQHNLSKLRDVYLQTTCLATLANMAPHAHHLSAYASQRLVSLFYMLSRKY 240
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: A0A7S0SZW7_9CHLO (Dymeclin (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SZW7_9CHLO) HSP 1 Score: 103 bits (256), Expect = 6.600e-20 Identity = 66/188 (35.11%), Postives = 100/188 (53.19%), Query Frame = 1 Query: 1369 LLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRWIQGASA 1932
LLLYSLL N FL ++R D D ++LPL+ L++ S +P +Y+ I+VL+ SQDA+FN + VV+ +V W R L+ TLGSL+++ ++R + +NL +L+D YL NCLA L N+AP + AYAA+RLVS+ +R++ + A A
Sbjct: 65 LLLYSLLHGNTSFLEYCLVRQDMDTVMLPLMEMLYNAPSR--------------------------------TPNQIYILLIIVLILSQDASFNANIHKLVVR-DVPWY--KERMLRDTTLGSLLMVLLIRTVKYNLSKLRDVYLHTNCLAALANMAPHCRDMSAYAAQRLVSLFDMLARKYTRLADA 217
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: O64487_ARATH (Dymeclin n=10 Tax=Camelineae TaxID=980083 RepID=O64487_ARATH) HSP 1 Score: 105 bits (262), Expect = 1.190e-19 Identity = 67/186 (36.02%), Postives = 98/186 (52.69%), Query Frame = 1 Query: 1357 EGVALLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRW 1914
EG LLLYSLLQ N F ++R+D D LL+P+L TL++ + S +Y+ IV+L+ SQD++FN S +++ V W L +LGSL+V+ ++R + HNL +L+D YL CLA L N+AP A HL AYA++RLVS+ SR++
Sbjct: 444 EGAVLLLYSLLQGNSDFKEYVLVRTDLDTLLMPILETLYNASKRT-------------------------------SSNQIYMMLIVLLILSQDSSFN-SSIHKMILPSVPWY--KEHLLHQTSLGSLMVIILIRTVQHNLSKLRDVYLQTTCLATLANMAPHAHHLSAYASQRLVSLFYMLSRKY 595
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Match: A0A175YI80_DAUCS (Dymeclin n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YI80_DAUCS) HSP 1 Score: 104 bits (260), Expect = 1.800e-19 Identity = 68/190 (35.79%), Postives = 100/190 (52.63%), Query Frame = 1 Query: 1345 SVGREGVALLLYSLLQANPGFLRAAVIRSDADALLLPLLRTLHDGASAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSPPALYVPAIVVLLFSQDAAFNRQSFRQVVQGEVRWGGPATRSLKGATLGSLVVMSILRCLGHNLKRLKDGYLLENCLAVLVNLAPQAEHLQAYAAERLVSVLIAASRRW 1914
S+ EG LLLYSL+ N FL ++R+D + LL+PLL TL+D AS +Y+ +++L+ SQD++FN S ++V V W R L ++LGSL+V+ ++R L +N +L+D YL NCLA L N+AP HL AYA++ LVS+ SRR+
Sbjct: 367 SLADEGAVLLLYSLVHGNAAFLEYVLVRTDLETLLIPLLETLYDPASRRSNQ--------------------------------IYMVLVILLILSQDSSFNA-SVHKLVLPTVPWY--KERLLHNSSLGSLMVIILIRTLKNNQSKLRDVYLHTNCLATLANMAPHVHHLSAYASQLLVSLFDMLSRRY 521 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10130.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10130.156.1 >prot_H-canaliculatus_F_contig10130.156.1 ID=prot_H-canaliculatus_F_contig10130.156.1|Name=mRNA_H-canaliculatus_F_contig10130.156.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=764bp NGGGARGGGGRGGGGVLAVEGFCDLQLEGVGLLLVLLGTQVYGPPPPSVPback to top mRNA from alignment at H-canaliculatus_F_contig10130:332..5046+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10130.156.1 ID=mRNA_H-canaliculatus_F_contig10130.156.1|Name=mRNA_H-canaliculatus_F_contig10130.156.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4715bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10130:332..5046+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10130:332..5046+ >mRNA_H-canaliculatus_F_contig10130.156.1 ID=mRNA_H-canaliculatus_F_contig10130.156.1|Name=mRNA_H-canaliculatus_F_contig10130.156.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4584bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10130:332..5046+ (Hapterophycus canaliculatus Oshoro5f female)back to top |