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Homology
BLAST of mRNA_H-canaliculatus_F_contig10126.153.1 vs. uniprot
Match: A0A6H5JKQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ4_9PHAE) HSP 1 Score: 241 bits (615), Expect = 6.530e-69 Identity = 112/165 (67.88%), Postives = 130/165 (78.79%), Query Frame = 1 Query: 871 NCPYLELWPDLFRRGRFPGGVPSEPNEETLTVVLEAFDSLGREEMFASYVDSITKRVKAAPCEQNGHWSPQFCHCSLDLTAPVYHIVGWSNMTDAAAEAIVPATYSRRRGLEIAKFLDDRMKNNHERHGKKTFARGSTTEAYSPKMLQAVHEAYARDYELFSQYW 1365
NCPYLELWPDLF R RFP GVP+ P +TL +V EAF S GR+ MFA YV+ IT+RVK PC QN HWSPQ+CHCSLD+TAPV+ IVGW+NMT+AA+ AIVP S RGLEI +FL DRM NHERHGKKT A + EAY+ + LQAVHEAYA+DY+LFSQYW
Sbjct: 203 NCPYLELWPDLFDRERFPDGVPTRPGVDTLAIVWEAFTSRGRDSMFAPYVEVITRRVKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANMTEAASAAIVPFASSSARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTAEALQAVHEAYAKDYKLFSQYW 367
BLAST of mRNA_H-canaliculatus_F_contig10126.153.1 vs. uniprot
Match: D8LBQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ5_ECTSI) HSP 1 Score: 178 bits (452), Expect = 4.670e-49 Identity = 83/121 (68.60%), Postives = 96/121 (79.34%), Query Frame = 1 Query: 1003 MFASYVDSITKRVKAAPCEQNGHWSPQFCHCSLDLTAPVYHIVGWSNMTDAAAEAIVPATYSRRRGLEIAKFLDDRMKNNHERHGKKTFARGSTTEAYSPKMLQAVHEAYARDYELFSQYW 1365
MFA YVD IT+R+K PC QN HWSPQ+CHCSLD+TAPV+ IVGW+NMT+ A+ AIVP S RGLEI +FL DRM NHERHGKKT A + EAY+ + LQAVHEAYA+DYELFSQYW
Sbjct: 1 MFALYVDVITRRIKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANMTEVASAAIVPFASSPARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTTEALQAVHEAYAKDYELFSQYW 121
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | probable Sulfotransferase pseudogene |
| Ec32 ortholog | Ec-27_003110.1 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 2374 |
| Cds size | 369 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928641.933068-UTR-H-canaliculatus_F_contig10126:508..1446 | 1622928641.933068-UTR-H-canaliculatus_F_contig10126:508..1446 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10126 509..1446 + |
| 1696845509.1973057-UTR-H-canaliculatus_F_contig10126:508..1446 | 1696845509.1973057-UTR-H-canaliculatus_F_contig10126:508..1446 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10126 509..1446 + |
| 1622928641.9480824-UTR-H-canaliculatus_F_contig10126:2516..2580 | 1622928641.9480824-UTR-H-canaliculatus_F_contig10126:2516..2580 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10126 2517..2580 + |
| 1696845509.2144349-UTR-H-canaliculatus_F_contig10126:2516..2580 | 1696845509.2144349-UTR-H-canaliculatus_F_contig10126:2516..2580 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10126 2517..2580 + |
| 1622928642.0150042-UTR-H-canaliculatus_F_contig10126:4157..5160 | 1622928642.0150042-UTR-H-canaliculatus_F_contig10126:4157..5160 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10126 4158..5160 + |
| 1696845509.2558017-UTR-H-canaliculatus_F_contig10126:4157..5160 | 1696845509.2558017-UTR-H-canaliculatus_F_contig10126:4157..5160 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10126 4158..5160 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928641.967683-CDS-H-canaliculatus_F_contig10126:2580..2645 | 1622928641.967683-CDS-H-canaliculatus_F_contig10126:2580..2645 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10126 2581..2645 + |
| 1696845509.2242615-CDS-H-canaliculatus_F_contig10126:2580..2645 | 1696845509.2242615-CDS-H-canaliculatus_F_contig10126:2580..2645 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10126 2581..2645 + |
| 1622928641.9840004-CDS-H-canaliculatus_F_contig10126:3248..3471 | 1622928641.9840004-CDS-H-canaliculatus_F_contig10126:3248..3471 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10126 3249..3471 + |
| 1696845509.2329736-CDS-H-canaliculatus_F_contig10126:3248..3471 | 1696845509.2329736-CDS-H-canaliculatus_F_contig10126:3248..3471 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10126 3249..3471 + |
| 1622928642.0005426-CDS-H-canaliculatus_F_contig10126:4076..4157 | 1622928642.0005426-CDS-H-canaliculatus_F_contig10126:4076..4157 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10126 4077..4157 + |
| 1696845509.2450638-CDS-H-canaliculatus_F_contig10126:4076..4157 | 1696845509.2450638-CDS-H-canaliculatus_F_contig10126:4076..4157 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10126 4077..4157 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10126.153.1 >prot_H-canaliculatus_F_contig10126.153.1 ID=prot_H-canaliculatus_F_contig10126.153.1|Name=mRNA_H-canaliculatus_F_contig10126.153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
MFASYVDSITKRVKAAPCEQNGHWSPQFCHCSLDLTAPVYHIVGWSNMTD
AAAEAIVPATYSRRRGLEIAKFLDDRMKNNHERHGKKTFARGSTTEAYSP
KMLQAVHEAYARDYELFSQYWG* back to topmRNA from alignment at H-canaliculatus_F_contig10126:509..5160+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10126.153.1 ID=mRNA_H-canaliculatus_F_contig10126.153.1|Name=mRNA_H-canaliculatus_F_contig10126.153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4652bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10126:509..5160+ (Hapterophycus canaliculatus Oshoro5f female)
ATCAGCTAGCTTCGCAACACATTTACCCGGCGCATTCTGTTTTACACTCG
AGGGCAGGCTACTGCAACACAACAGTTTGCTCTTCGCAAGCGCAGCAGCG
ATGACCACACGCGTCCGCGTATTTAAGTAATCTTGAGGAAAGGGACTCGA
GGAGCACAAGCCCGTGGCGTGACGGCGCGCGTGTAGGACCCTTTCCGTGG
AGCTGTACATCTCGCGGTGACCTTCCTACTTTTCCTTCTGGCAAGCTTAT
TCTGTACCTGGCTTGCGATCGCTGATTGGGTTACCCGTTGCGACATAAGT
ATGTTGGAAATAAAGGTAGGAAGGCAAAACTGAAGCACATCGACCGCTCT
GTAGCGTGCGGAAAGGGTAGTCGCGCCGATGTCGAGAACTTTGAAATTAA
AGCGTTCCTAGTGATAAAGGTGGCGGCGACGACGATGGCGACGATCAACC
AACGGTGATGGTAGTGAACTTGGACATGGTCTCATGTTAGGTTTATCAGG
ATTTCCCTGCACACTTTCAAACATGGCCTCATTTTGCAATTGAACAACCG
AACGCGCCGAACCCAACGACCGATAGATTAGGGGCGAGTCTTCTTGCCTT
GGAAAAATCTAAATCGATACCGCAAAGCAACGCCGCTTCCTGCAACCATT
TTCCGATAGGGTCGAACTCCCAAGAAACGGACACAATATACGCAAAACGG
GCGTGCCCTGCCCGCGTCCTGTATGTACGTCGTCAAACCAAACGCCCGAC
TCACCTTAAGCGCGAGCATCGAACAATCGTTTCCTTTTACCCCCGCCTTT
TGCCTTTGGTTTCGGATAAATGCTTGCTATCGACATCTCGGGCGTATTCA
CCAACTAACCAACAAACAGGAACTGCCCGTATTTGGAGCTGTGGCCCGAC
CTGTTTCGACGTGGACGCTTTCCGGGTGGGGTTCCCAGGTGAGGCGTCGG
AGGTGGGATCAACCAACCAAGCGAGGTGGCGGATCATACACATATCTGCG
CTGTCCTCGTTTTTCCTTTCCTGAATCTAAATGTTTTGGCCGGTCTGCCT
ACACGCGTCAGGTACTCTGATCAAAATTGAACCAGTTCTTCGTTTGGCGA
TTGCCCATGGGGGGGGAAAGAGAGCAGAGCGCGTGCTAAGTATGTGCTGG
TAAAGGCAGTGCAAGGATCTTTTGTTGCTAGATCTGAAGCAGTGTTTTGA
TTTTCGTCACGAGGGATCAATTAAAAGGCTCTCATAGGTGGTATTGCTCT
CTATCTTCCCCACACACGCCGAGAAACATCAAATCGGAGAAACGCCTTCG
ATCAAGTGTGAAGAAATGGATCCGGTATCTACTCAAAATAAATCGGCTGC
AAGTGCGTGCGTGCGTGCGTGTAGCGCACGTGTTGTAGCTTGTTCGGACG
AGCGACGCGTGTTCCCGCCGAATGGTGATTGAAACATTTGGTTTGATTGT
GCGGCAGGCGAGGAAGTGGGCCGCTCAAATTTCAGGTGTTCTTTCCTTTA
GAAGATAACTCTGAACAGTTGAGGACGACTGTAATGCCTTTGAACTTTCG
ACGGGGAGGGCTCAATACGAGCAGCTAGGACAAAGGCAACAGATCGTTGA
AAATTGTGGCCCACGGCGGTCTTGAGCTGATGAAGCGTTGCACGGCGAGC
GAGGTTGACCTCTACTCAGATGCTTCCTGTCGCTGACGTAAGGCGAGGCT
GATTGCGGAGGAGACGAGACGAGTGAACGGCAGCTCCGTGAGATGATGCC
GAACGCACCCATCCCCGGGGCAGAAACGAGGAAGAAAGCGCGAGAGACGA
TGACACCGGAGGGCACAACCTGAAATACGTCCGCGCTTTCGTTCGCAAAC
ACGTCCTTGCCCGCGTAAGATAAACGAAGTTTTTACTCCGTCTACTGGCT
GTGTTTTGGTTGTTAAGTGTTTCTGCTGCGTTTCACGTTAACCCGCAAGT
GACTTCATTCGAGCACCCCAAATGCGCATGAATTGCACGTCAACCGCACG
TGCCACAGCGAACCGAACGAGGAGACCCTCACTGTGGTCTTGGAAGCTTT
TGACAGCCTAGGCAGGGAGGAGATGTTCGCCTCGTACGTTGATTCCATCA
CAAAGAGGGTCAAGGCCGCCCCTTGCGAGCAGAACGGGTGAGTGAGTCGA
GCTTAGAATTCGACCAAAACATTTTCCTGTCTCAAATTTCGTCATGAGCG
AAGAAGGAGCTGTTTCATGCCCCTGGTCCCAACGCGATGGGGTGGCGATC
GCGGTGTGGGCAATTTATGACGCTTTGCTCACCCCTGCTACTCTCACACA
CCTCTCGGAGGGGTGACACTCCTACCTCACAGTGGCTGTTCTAAACTCGG
CGAGATCAATCGAAAAGCGAAGCTTGCACATTGCATTCTTGCAAAGAAAA
TAAAAGCGCACATGTGAACCGATCGCCGAGGTCAGACCACACTGAGTGGC
ATCTCTGAAGTTGCTGATGACTCCCTCTAGAGCACCCAGACACCATACAA
AGCTTCCTCAAGCCAGGAACAAAAAAACCAACGTCAACGAAGTAACAATG
ACGACGACGGCAACAGCAGCAGATCAGTAGCAGCAACAACACCAGCAGCA
ACAACACCAACGGCAACACCAACACCATCACTACCAACAACAGCAACAAC
AGCAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAAGAACAACAACAACAACAACAACAACAACAAACAGGCATTGGTCA
CCGCAGTTCTGCCACTGTTCGTTGGACTTGACGGCTCCGGTCTACCACAT
CGTGGGATGGAGCAACATGACCGACGCGGCGGCGGAGGCCATCGTTCCCG
CAACCTACTCTCGCCGCCGTGGCCTAGAGATCGCCAAATTTCTCGACGAC
AGGATGAAGAACAACCACGAAAGGCACGGGAAAAAGACCTTCGCGAGGGG
TTCAACGACAGAGGTAGGGAGCACGGGTACCACGCTTGCATGCGCTGTTC
CCTAAAGATCTAACATGTACCTGGTAGTCTTTGTACATGTTGTATCGTAT
AATACTTACTACCGGGTAAATATCTTATGTCTCTGTTTTCGGGCTGCCCG
AGTTGTGCGGTTTTGTGTTCCGTGATGCCATGCAAACCTGTGCCATGCCA
TGCCGTGTCGTCTCGCAATAGCGCGTCTTCGTTTCTCGCCAACGATACGT
GCAGTGCCGCCGACGACGCGCTGATCAATCCGGTCGCGTCCTTCTGGAAT
TGTGCATTTTGCTTTAGTACGTGCTAGCGTCGAGGGGGGGGGGATGGTCT
TCGAGCGTTTGTTGAAGGGCCCAGCCGCACAGCCATTTTCTCCCGAGGAA
CAAAATTCATCCCGTGGTACATCCCGCACATGTGTTGCTGTTGAATTCTG
ATGCCATGTTCCCTTTCTCTTGCTTTGTCGGCGTCTTTTGTTTATGCCGA
TTCACATAAACCTTTCCCCCCCTTTTTTCTGCCGCGTTTGCACCTATCCG
CCTTGCCATTTGCTATGATCCGATACGACACACCACTGCTCAATAAAAAC
GGCCACACGTCGAACCAGGCATACTCGCCGAAAATGCTCCAGGCGGTTCA
TGAGGCCTATGCCAGAGACTACGAGCTTTTTTCCCAGTACTGGGGGTGAT
TGCGAAAACTGAAGTCAGGTGGTAAGGTACACTGCTCTGTGTGATGCGGC
AGCCTCTTCTTGCCTCATGGCTTCGCCTGAAAACAACGCAGAAGGGTGTT
CTCTTTGTTAGAGCTTGTTCCGGCCGTTTGCTCAGGAGGGATTGTCTTTC
GACGATGCCGTAGAAATAGAGGTTACGCACGGGTACCATAAACACATTCG
CAAAGAACGTGTTAGACGCTTTCTGAGCTGTTGTTCCTCAATTTGTATCT
TTATCGAAAAATTGACTTGTCTTGTTCGCCTGGGTCTTTGCGATGAACGT
GGTTCGTGAGATGGATTTTTGGGTGTTGCGGTGACTGTCGTGCCATGGAA
CCTCTTTCAGCTTGTTGTAAGAAGAGTTTTTCAACGGAGAACCTACCTTT
GCAGAACCAACAGAACGCGACATTGCATACCTGATGCGAATGGGTATCAC
GGAAGCATTGTAGACGATACTCTCCCTGTACTGGATGTTTCCTTGCAATA
CACACACAGAAGGCACTGCAATAGATGTTTTTCCAATTATACAATATGAC
ATGTCTTGGTTGTGCGTATCAGGGGAGGGAACGGGTTTTGTTCACGTTGC
GAGAGAGTGTTTCACCAGTAGAAACAAACAGCAACTGGGCAGATTTATTG
AACAGGCGCAACAGCCTTTGGACCTCCAAAACCAAACGCCTTGGAAAGTG
CGGCAGCGAGCAAGGAAGGAATAAACGATTGCTCGCGTGCAGCCGCGAAG
GCACAAAGAGGTTGTGTGTATCACGCGCGAAAACGTTGCTTTGAAACAGG
AGGTACGTTTCTCTCCGATGCCCCCTCTGTTCTAGATATTGTTTGACTGG
TGTTCGTTTCGGCAGTTTTTATAAAACAAGTCAACAACACCGAAGGAATA
CCCACCTGAGACACTGTCTATCTCAAGGGGCTTTTGTTAATTCCATTCAG
TGAGGGTTCCATTCGTGTGGCAGGATGAAACTATGTAGCGGTAGGCCAGT
TG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10126:509..5160+ >mRNA_H-canaliculatus_F_contig10126.153.1 ID=mRNA_H-canaliculatus_F_contig10126.153.1|Name=mRNA_H-canaliculatus_F_contig10126.153.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10126:509..5160+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGCCTCGTACGTTGATTCCATCACAAAGAGGGTCAAGGCCGCCCC
TTGCGAGCAGAACGGATGTTCGCCTCGTACGTTGATTCCATCACAAAGAG
GGTCAAGGCCGCCCCTTGCGAGCAGAACGGGCATTGGTCACCGCAGTTCT
GCCACTGTTCGTTGGACTTGACGGCTCCGGTCTACCACATCGTGGGATGG
AGCAACATGACCGACGCGGCGGCGGAGGCCATCGTTCCCGCAACCTACTC
TCGCCGCCGTGGCCTAGAGATCGCCAAATTTCTCGACGACAGGATGAAGA
ACAACCACGAAAGGCACGGGAAAAAGACCTTCGCGAGGGGTTCAACGACA
GAGGCATTGGTCACCGCAGTTCTGCCACTGTTCGTTGGACTTGACGGCTC
CGGTCTACCACATCGTGGGATGGAGCAACATGACCGACGCGGCGGCGGAG
GCCATCGTTCCCGCAACCTACTCTCGCCGCCGTGGCCTAGAGATCGCCAA
ATTTCTCGACGACAGGATGAAGAACAACCACGAAAGGCACGGGAAAAAGA
CCTTCGCGAGGGGTTCAACGACAGAGGCATACTCGCCGAAAATGCTCCAG
GCGGTTCATGAGGCCTATGCCAGAGACTACGAGCTTTTTTCCCAGTACTG
GGGGTGAGCATACTCGCCGAAAATGCTCCAGGCGGTTCATGAGGCCTATG
CCAGAGACTACGAGCTTTTTTCCCAGTACTGGGGGTGA back to top
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