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Homology
BLAST of mRNA_H-canaliculatus_F_contig1012.146.1 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI) HSP 1 Score: 171 bits (433), Expect = 6.350e-49 Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 1 Query: 1 MEVPQLQFKGCELDAITLSWQRTGDAGYKLEFREILVPDWAGCRSETVAPASSSSPETTITVTDLNPSSSYLFRLYTVAADGREVGPGPEVAFDTEVVSCAPTNKPCCIIS 333
M VPQLQFK CELD+ITLSW+R GYKLEFREILV DWAGCRS +AP SSS E + VT LNPSSSY+FRLYTV A G+EVGPGPE+AFDTEVVSCAPTNK CC IS
Sbjct: 1 MAVPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSSSTEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTIS 111
BLAST of mRNA_H-canaliculatus_F_contig1012.146.1 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.340e-20 Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 4 EVPQLQFKGCELDAITLSWQRTGDAGYKLEFREILVPDWAGCRSETVAPASSSSPETTITVTDLNPSSSYLFRLYTVAADGREVGPGPEVAFDTEVVSCAPTNKPCC 324
++P L+F+ C+L+++TL W YKLEFR++ W S + P S + T+ VTDL PS +Y+FRL+ + A G+ GPGP+ AFDTEVVSC PT++ C
Sbjct: 7 KLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPP--SQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 111
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Fibronectin type III domain protein |
| Ec32 ortholog | Ec-16_004820.1 |
| Exons | 4 |
| Model size | 1272 |
| Cds size | 336 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928641.0677583-UTR-H-canaliculatus_F_contig1012:6990..7926 | 1622928641.0677583-UTR-H-canaliculatus_F_contig1012:6990..7926 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1012 6991..7926 - |
| 1696845508.8639116-UTR-H-canaliculatus_F_contig1012:6990..7926 | 1696845508.8639116-UTR-H-canaliculatus_F_contig1012:6990..7926 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1012 6991..7926 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928641.0804133-CDS-H-canaliculatus_F_contig1012:7926..7973 | 1622928641.0804133-CDS-H-canaliculatus_F_contig1012:7926..7973 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1012 7927..7973 - |
| 1696845508.8723342-CDS-H-canaliculatus_F_contig1012:7926..7973 | 1696845508.8723342-CDS-H-canaliculatus_F_contig1012:7926..7973 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1012 7927..7973 - |
| 1622928641.0911262-CDS-H-canaliculatus_F_contig1012:8758..8933 | 1622928641.0911262-CDS-H-canaliculatus_F_contig1012:8758..8933 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1012 8759..8933 - |
| 1696845508.880954-CDS-H-canaliculatus_F_contig1012:8758..8933 | 1696845508.880954-CDS-H-canaliculatus_F_contig1012:8758..8933 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1012 8759..8933 - |
| 1622928641.1031237-CDS-H-canaliculatus_F_contig1012:9794..9849 | 1622928641.1031237-CDS-H-canaliculatus_F_contig1012:9794..9849 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1012 9795..9849 - |
| 1696845508.8956416-CDS-H-canaliculatus_F_contig1012:9794..9849 | 1696845508.8956416-CDS-H-canaliculatus_F_contig1012:9794..9849 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1012 9795..9849 - |
| 1622928641.250916-CDS-H-canaliculatus_F_contig1012:10298..10357 | 1622928641.250916-CDS-H-canaliculatus_F_contig1012:10298..10357 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1012 10299..10357 - |
| 1696845508.907256-CDS-H-canaliculatus_F_contig1012:10298..10357 | 1696845508.907256-CDS-H-canaliculatus_F_contig1012:10298..10357 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1012 10299..10357 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1012.146.1 >prot_H-canaliculatus_F_contig1012.146.1 ID=prot_H-canaliculatus_F_contig1012.146.1|Name=mRNA_H-canaliculatus_F_contig1012.146.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
MEVPQLQFKGCELDAITLSWQRTGDAGYKLEFREILVPDWAGCRSETVAP
ASSSSPETTITVTDLNPSSSYLFRLYTVAADGREVGPGPEVAFDTEVVSC
APTNKPCCIIS* back to topmRNA from alignment at H-canaliculatus_F_contig1012:6991..10357- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1012.146.1 ID=mRNA_H-canaliculatus_F_contig1012.146.1|Name=mRNA_H-canaliculatus_F_contig1012.146.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3367bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:6991..10357- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTACCGCAGCTGCAGTTCAAGGGGTGCGAACTGGATGCAATCAC
GTTGTCTTGGTGAGGATGCTGTAATTGCATCGAGAAACTGAGACTAGGGC
TGTTCAAAATCACCGCCCCTCTTCCATATACGGCCGTGTTCGGTTCTCTT
CTGAGAGCTTGAGACTCCTACTACCTGTACAGTAGTAGGACAGCAGGAAG
TCTTGAGACGCGCAGTCTTAGTCTAGCTCAATCGGAAACGGCAGTACAAC
AAGCTTGCAACAGTTGAGCCTGTGCAATCTACTGTCGACGATACGTGAGC
CGTGGCCCCTCGAGGTGGTTCACTCTTCACCTGGTCTCTTGCTTTCAGAG
AACAACCCCCGGCAAAAATATTTGAGGAAAATCCCCCGCCAATGATTGGC
TGGCCCTCTTCGATGTGACAATTTTCAATTTTCATGCATGTGTGGATATC
TGCCTCTCTTCTGATTTCCTGTGCAATAAACCTCGTCCGCAATTGTTCAC
TTTTCCAGGCAACGGACGGGAGACGCTGGCTACAAACTGGAGTTTCGGGA
GATTCTCGTGCCGGTGGGTGTGTATGTGCGTATGTGTGTTTGCATCAGAC
AGAACAGCATGATGATGGTCAAAGTGGTCCAAACAGCGTGCTCAAACTCT
GTTGCAACGTAGCGTCACACCTAGTCATGAATGTGCGCGGAGAAGCCGGG
GATGCCCGACGGTCGGTGTGCTGCAGCATGCAGACTTCACGATAGAGGCG
CATCCGTCTATTGTCAGTCTTGCTCATATATCATTCCAATTTTGAGGTTG
AAGAACTTGAAGTTAGGTCAACCGACGCGCTACTGTAGTGTTGATGAAAT
TGCGCACGAGAGTCGCTCTTGGCCTCCTATTATTGGAGTACACTGCACAC
TGTAGGAGGCAATGGAGTCTTCAGAAACATTTCATCTTGACACACACACA
CTTATACAACGTATTCAGAATTGGTCTGGAGTCTAGTGTAAAGTCGATAC
CCCCCAAGCATACTACTCGGAGGAGGAAAGTGAAGCACCTGGTACCTTGT
ACCTCATTTCCCCATGAGCAAAGTTCGTCTGCCGTACCTCTGCCGTTTGG
TTGTGTGACTGTGTTGTTTGTCGACGCTGGATGCTTGTTCTTTATTTTGG
TCAAGGGCCGTCGCTATCTCGCCTTGGCGAAGCCCCCATACCACATACCT
CCGTTTTGGCGAAACGCTTTACGGAAAACAACCATATTCGCTAACTCACG
CATTGTAGTGGTGAAGCGAATCGTGCCGCTTCCCGTTCAAATATGTGGGA
TTTTGTGCGGCAGTAGGCCTTCTGCCCAACCCGAAACACAAAAATGTCCA
TGCTGCTGCTGGGCATGAGATGTGCAATGTGCTCTGATCCGGTGGACACA
CATTTCCCGCCGACGATGATGCAGGATTGGGCGGGCTGTCGCTCGGAAAC
AGTAGCGCCTGCATCATCTTCTTCTCCTGAGACGACGATTACAGTCACCG
ACCTCAACCCCTCGTCTTCATATCTCTTCCGGCTCTACACCGTTGCAGCT
GACGGCCGAGAGGTTGGACCTGGACCAGAAGTTGCATTTGACACCGAAGG
TAAGGCCTGCTGTCGTGTGTCATTGCAGATGTCACGCAACATAGCGATTG
GGGGGAAGCACGGCACGAACCGGCCCACGAAACTTTGAAGGCAAATATTG
CCTTGAGCGGGAAGGCGCCCCTCGTCCCATGCCCGCGCCGCAGCAGCAGC
TGCTGCCACTTGCTGCTACTGGAACTTGTACTCCTTCTAGCGTCTACAGC
AGTATGCGTATGCGCTCGTGTGCGGTGGTACCATTGAACTCTGTCAAGAG
CAGCCGATTACTTAGGGACCCACCGGAGGCTATGGAATAACCCAACTGGC
GAGAAAGTGGCAAGGTAAAGTATTCCATGGACATTCGATGACAGAAACAT
AATTGCTAGGCTTCGCATAAATCTGCTTCGATACATAGATTTGTTGAGCA
AGATGGTGGACCGCATGATCCAGAGTGTCCCTTCGTGCACCTCAAGTATG
AGAGGCATCATTGGGGTTGTGCTGCTTAGTTTTCTTTCAACACGCTCCAG
ACGTGGGTTGCGATATGTCAAGAGAGATAGCTGGACCAATTCCTACCAAC
CATGACCCTTTGGCATTGAAAGTGTCGGGGAGGGGTGATTTGCCGACAAT
TCGTCGAAAGCAACAGCTGGAAACGCGTTACGAGCTCAAAAGTACGGAAG
AAGTACAGCCGTTGTCCATGACATCACTACCGGGGTTTTATGTTGAATAT
CTTTGGAAGCTTCGAGCACAACCCGCTGAAAGTTATGCCCTCTTGTTGCG
TTTCTTTGCTTAACGCTTCATCATTGTAATGCAGTTGTATCGTGCGCACC
GACGAATAAACCTTGCTGCATCATCTCCTGACGACTGGAGACCAAGCCCT
GGCGACTGTATGAGTTGGAAGCCAGAGGTGAAAATGTGGACACGAACAGG
GGGCGAACTACTTGCCGAAGGCGCACTACGGAGAGCGTCCAGGAGGGAGG
GGCGATCTGTCGGGGGAGATGGCTGCCAACCTTATTATGTTTATATTTTA
TTGAAAAGTGTTTAGAAGCAAGTGGAAATTAACAAGTTTTTAAGAAGGAC
AACCTGCGCGGATTGGGGGATGGAGGATATGAGGTTAGCAAAGGGAATGA
ACGCAAGAGTCGTAACCCTAAACCTACGTCAGTCCATTCCACCCCACGTC
AGTTCAATCACTCTCCTTGTCAGGCGTCCCCGGTTGTTGGTCATGAGGGT
TCCACCAAGATCGAAATGTGAACGCCAGAACGACACGTCAAACGTCAATA
ACCCGTTTGTTGTCTCCGTTGCTCGTCTTGTGGTCTTCTCGCCCGGTCTT
GTACGTACAGCGGCAAGGACTGGATCACCCATCACTTCTTGAGCGATGGC
TCACCGAGTTATCCATCGATCGGCGTTACAATGGTATTGAATAAATAGCG
CCCGGAGGCCGTATTCATGCGACATATTTATGTCTTGACATTCATGGTTC
AGAGAGAGATGGATCGTTGCTCATTAGCTTCCTTCGTCGGGGAATTTAGA
GAAAAGGTGTAAAAGCCGTGATCTTCATTGCTTTTTGTACCTTATTGCAC
GAAGCTACCATAACACAAGGCCAAAGGACTACTTGTATAACGTTCGTTTT
TGTCGCATCACACACAAACCTGAAAACCTTACTTCGTACCAGCTTGTAAG
AAAGTTGCGGGCCGCGATGAATCCGAGCAACATGGGATTAACATATCATC
AACGAACGTACTCCGGAGCGTATGGAATATACTGGGCTCCAAGTTTTCGT
ATTGCCAGGAAGATGTC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1012:6991..10357- >mRNA_H-canaliculatus_F_contig1012.146.1 ID=mRNA_H-canaliculatus_F_contig1012.146.1|Name=mRNA_H-canaliculatus_F_contig1012.146.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:6991..10357- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTACCGCAGCTGCAGTTCAAGGGGTGCGAACTGGATGCAATCAC
GTTGTCTTGATGGAGGTACCGCAGCTGCAGTTCAAGGGGTGCGAACTGGA
TGCAATCACGTTGTCTTGGCAACGGACGGGAGACGCTGGCTACAAACTGG
AGTTTCGGGAGATTCTCGTGCCGGCAACGGACGGGAGACGCTGGCTACAA
ACTGGAGTTTCGGGAGATTCTCGTGCCGGATTGGGCGGGCTGTCGCTCGG
AAACAGTAGCGCCTGCATCATCTTCTTCTCCTGAGACGACGATTACAGTC
ACCGACCTCAACCCCTCGTCTTCATATCTCTTCCGGCTCTACACCGTTGC
AGCTGACGGCCGAGAGGTTGGACCTGGACCAGAAGTTGCATTTGACACCG
AAGGATTGGGCGGGCTGTCGCTCGGAAACAGTAGCGCCTGCATCATCTTC
TTCTCCTGAGACGACGATTACAGTCACCGACCTCAACCCCTCGTCTTCAT
ATCTCTTCCGGCTCTACACCGTTGCAGCTGACGGCCGAGAGGTTGGACCT
GGACCAGAAGTTGCATTTGACACCGAAGTTGTATCGTGCGCACCGACGAA
TAAACCTTGCTGCATCATCTCCTGATTGTATCGTGCGCACCGACGAATAA
ACCTTGCTGCATCATCTCCTGA back to top
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