mRNA_H-canaliculatus_F_contig1012.145.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: D7FM74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM74_ECTSI) HSP 1 Score: 388 bits (996), Expect = 2.060e-131 Identity = 180/220 (81.82%), Postives = 195/220 (88.64%), Query Frame = 3 Query: 66 VRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVERECPRITELLVLEGQAR--DASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEGEWLPPIAEET 719
VRV VHTS MEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANS+FNEHGHPDGEEILVLEGSWQD NG+HPAGTYMLNPEGFRHAP S+DGCVLWVKLRQHGGPSR+H RLDT S+ W+DTD PGVK K LYSHP H ESMRIEKW+AGAKVEREC ++TE LVLEG+A DASETF RSWLRLPAGA LSM+S +GC +F+KEGEWLPP + T
Sbjct: 11 VRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERECQKMTEFLVLEGEAEAHDASETFTKRSWLRLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNT 230
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A1Y5TZ85_9PROT (ChrR Cupin-like domain protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TZ85_9PROT) HSP 1 Score: 235 bits (599), Expect = 1.220e-71 Identity = 118/215 (54.88%), Postives = 151/215 (70.23%), Query Frame = 3 Query: 63 YVRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVEREC-PRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEGEWLPP 704
+ RV + T+AM W SPSPSVWRKR+ L GP E+GRVT++VRY+ S+F H HPDGEEILVLEG++ DE+G++PAG+Y+LNPEGFRHAP S DGC+L+VKLRQ GGP R H +DT +L WQ + PG VK LY+ P E MR+ + + GA+V R R E+LVLEG D T+ SWLR P G+A S+ S G I++K+G LPP
Sbjct: 10 HARVAMDTAAMAWQASPSPSVWRKRLDLSGPAEAGRVTALVRYEPGSRFPAHEHPDGEEILVLEGTFSDEHGDYPAGSYLLNPEGFRHAPFSVDGCLLFVKLRQFGGPGRAHHAIDTAALDWQPGNMPGRSVKPLYAAPDGIEQMRLVRLDPGAQVPRHVHDRGEEVLVLEGAIADEDGTYGKGSWLRFPDGSAHSVRSEHGAVIYVKQGH-LPP 223
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A7C2JUM9_9GAMM (Anti-sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JUM9_9GAMM) HSP 1 Score: 229 bits (584), Expect = 2.670e-69 Identity = 116/208 (55.77%), Postives = 144/208 (69.23%), Query Frame = 3 Query: 69 RVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVER-ECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
RV V T+AM W PSPS +V+RKRV L GP ESG+VTSVVRY + F+ H HPDGEEILVLEG + DE+G+ PAGTY+LNPEGFRH+P S+DGCVL+VKLRQ G +R HV L T +L W+ GV V+ LY+ ++MR+E+W A++ E P EL VLEG RD F +WLRLP GAA S S+ GC ++IKEG
Sbjct: 17 RVAVDTAAMAWTPSPSRTVFRKRVHLVGPPESGQVTSVVRYGPGATFHTHAHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHSPFSRDGCVLFVKLRQFPGRTREHVALRTDTLEWRPAARAGVAVRPLYAQAGFADTMRLERWPPEARLRPIEYPSGAELFVLEGSFRDEDGEFARGAWLRLPPGAAHSPSTAEGCVLYIKEG 224
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A523JHQ7_9DELT (Anti-sigma factor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JHQ7_9DELT) HSP 1 Score: 221 bits (563), Expect = 3.320e-66 Identity = 112/209 (53.59%), Postives = 145/209 (69.38%), Query Frame = 3 Query: 72 VCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAK---VERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
V +HTS+MEW PSPS SV RKRV L G E+G+VTSVVRY NS F H HP+GEEILVL+G + DE+G+ PAG+Y+LNPEGFRHAP SK GC+++VKLRQ+GG RRHV L T L W+ G+++K LYS P+ MR+E+W GA V E E+LVL G+ D +++ SWLRLPAGA + S +GC++++K G
Sbjct: 15 VVMHTSSMEWLPSPSGSVLRKRVHLVGGAEAGQVTSVVRYLENSSFAAHDHPEGEEILVLDGVFSDEHGDWPAGSYLLNPEGFRHAPFSKPGCLIFVKLRQYGGRGRRHVALCTHELPWKSGPHAGIELKLLYSEAGFPDEMRLERWAPGATPGTVSYEGG--AEILVLRGRLEDEQGSYDKLSWLRLPAGATHTPVSPNGCELYLKTG 221
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A523JY10_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523JY10_9GAMM) HSP 1 Score: 217 bits (553), Expect = 8.480e-65 Identity = 107/207 (51.69%), Postives = 134/207 (64.73%), Query Frame = 3 Query: 72 VCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKV-ERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
V V T+AMEW SP VWRKR+ L G ESGRVTS+VRYDA S+F H HP+GEEILVLEG DE+G +PAGTY+LNPEGFRHAP S GCVL+VKLRQ+ G R H +D+ S WQ ++ PG +V LY H ESMR+ + G +V E + P E+ V+ G D T+E +WLR P G+ S GC +++K G
Sbjct: 12 VVVRTAAMEWRSSPGAGVWRKRLELRGAAESGRVTSIVRYDAGSRFPPHEHPEGEEILVLEGILADEHGSYPAGTYLLNPEGFRHAPRSDQGCVLFVKLRQYPGSDRSHCEVDSNSATWQQSEPPGREVLPLYDEHGHRESMRLVRLAPGTRVPEHDHPGGEEIYVMAGSLADGQGTYEQGTWLRFPDGSRHQPFSDEGCTLYVKTG 218
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A4AC30_9GAMM (Anti-ECFsigma factor, ChrR n=1 Tax=Congregibacter litoralis KT71 TaxID=314285 RepID=A4AC30_9GAMM) HSP 1 Score: 216 bits (549), Expect = 3.930e-64 Identity = 105/208 (50.48%), Postives = 138/208 (66.35%), Query Frame = 3 Query: 69 RVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVER-ECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
R V +S ++W SP V RKR+ GP ESG+VTS+VRY S+F H HPDGEEILVL+G + DE+G+ PAGTY+LNPEGFRHAP SKDGC+L+VKLRQ G SR+HV LDT + W+ + PGV K LY+ + + MR+E+W A + P+ EL VL G DA + SWLRLP G++L+ + C+++IKEG
Sbjct: 13 RTAVDSSTLDWQESPGGEVLRKRLHRVGPAESGQVTSLVRYQPGSRFPAHAHPDGEEILVLDGVFSDEHGDWPAGTYLLNPEGFRHAPFSKDGCLLFVKLRQFPGESRKHVALDTNTAEWRSSVRPGVAWKKLYAQDSFSDHMRLERWAAPGNIGTLNFPQGAELFVLRGSFADAQGDYPTHSWLRLPPGSSLTPEGNTPCELYIKEG 220
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: UPI000688EB27 (cupin domain-containing protein n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI000688EB27) HSP 1 Score: 216 bits (549), Expect = 4.610e-64 Identity = 107/211 (50.71%), Postives = 137/211 (64.93%), Query Frame = 3 Query: 69 RVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKV-ERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEGEWL 698
RV + S+M+W PSPS +VWRKR L G ESG+VTS+VRYD ++F H HP GEEILVLEG + D+ G+ PAG+Y+LNPEGF HAP S +GC+L VKLRQ G RRH+ LDT L WQ ++ GV VK LY+ +PE MR+E W + E E P E V+ G+ D + SWLRLPAG+ + S GC+++IK G L
Sbjct: 11 RVQLDASSMDWQPSPSGTVWRKRFHLVGEGESGQVTSLVRYDPGARFPSHPHPGGEEILVLEGIFSDQQGDWPAGSYLLNPEGFEHAPGSAEGCLLLVKLRQFAGQERRHLALDTAELAWQPSEIKGVLVKQLYADNDYPEQMRLEHWAPDSHCGELEYPEGAEFFVISGEFEDEQGRYPAGSWLRLPAGSRHNPRSALGCELYIKTGHLL 221
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A534ASB5_9GAMM (Anti-sigma factor n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534ASB5_9GAMM) HSP 1 Score: 214 bits (545), Expect = 1.360e-63 Identity = 106/209 (50.72%), Postives = 144/209 (68.90%), Query Frame = 3 Query: 66 VRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKV-ERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
RV V T + W PSPS +VWRKR+ L GP E+G+VTS+VRY +S+F H HPDGEEILVLEG + DE+G+ PAGTY+LNPEGFRHAP S+ GC L+VKLRQ G RRHV +DT++L WQ + G +K LY+ + +SMR+E+W +G++ E + + EL VL G D +++ +WLRLP A ++ GC+++IKEG
Sbjct: 11 ARVVVDTKTLPWTPSPSGTVWRKRLHLVGPPEAGQVTSLVRYQPHSEFPLHDHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPYSRGGCHLFVKLRQFPGKDRRHVVIDTQNLSWQTRE--GRAIKLLYAQVGYADSMRLERWPSGSRPGELKYSQGAELWVLGGAFEDERGSYDAHTWLRLPPQARHCPRTSGGCELYIKEG 217
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A536YCZ3_9PROT (Anti-sigma factor n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YCZ3_9PROT) HSP 1 Score: 214 bits (545), Expect = 2.200e-63 Identity = 109/207 (52.66%), Postives = 134/207 (64.73%), Query Frame = 3 Query: 66 VRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEAGAKVER-ECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIK 683
VR T+ MEWAPSPS SVWRKRV L GP ESG+VTSVVRY S+F H HP GEEILVLEG + DE+G+ PAGT++LNPEGFRHAP S+ GCVL+VKLRQ G R H+ +DT L W+ + P V KALY + MR+E+WE A + + EL VL G+ D + + WLRLPAG+ S GC ++IK
Sbjct: 11 VRAVADTTRMEWAPSPSRSVWRKRVHLVGPPESGQVTSVVRYGPRSRFPAHDHPQGEEILVLEGVFSDEHGDWPAGTFLLNPEGFRHAPFSEPGCVLFVKLRQFPGRERSHIVIDTHKLAWEPSSLPAVAYKALYQQTGFSDVMRLERWEPQADLGVVSYEQGAELFVLGGEFVDEAGAYSAGCWLRLPAGSEHHPRSAGGCTVYIK 217
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Match: A0A7Y2ICR3_9GAMM (Anti-sigma factor n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2ICR3_9GAMM) HSP 1 Score: 213 bits (542), Expect = 4.920e-63 Identity = 105/211 (49.76%), Postives = 137/211 (64.93%), Query Frame = 3 Query: 66 VRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSKFNEHGHPDGEEILVLEGSWQDENGEHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSRRHVRLDTKSLHWQDTDTPGVKVKALYSHPAHPESMRIEKWEA---GAKVERECPRITELLVLEGQARDASETFEPRSWLRLPAGAALSMSSTSGCDIFIKEG 689
VR + T AMEW SPS +VWRKRV L G ESG+VTS+VRY S F H HP+GEEILVLEG + DE+G+ PAGTY+LNPEGFRHAP S+ GC+L+VKLRQ GP R H +DT+ WQ T GV K+LY + ++ R+E+WEA + E + E VL+G+ D + +WLR+PAG S ++ GC ++IK+G
Sbjct: 14 VRAFMDTQAMEWTASPSGTVWRKRVHLVGAPESGQVTSIVRYQPESSFPAHDHPEGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPFSQQGCLLFVKLRQFPGPDREHHVIDTRDREWQPTQRKGVWQKSLYRQAGYSDTTRLERWEAESTAGTISHE--QGAEFFVLDGEFEDDEGVYPAGTWLRIPAGGMHSPGTSRGCQLYIKQG 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1012.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1012.145.1 >prot_H-canaliculatus_F_contig1012.145.1 ID=prot_H-canaliculatus_F_contig1012.145.1|Name=mRNA_H-canaliculatus_F_contig1012.145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=227bp MPYRTRSYVRVCVHTSAMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYback to top mRNA from alignment at H-canaliculatus_F_contig1012:160..5440- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1012.145.1 ID=mRNA_H-canaliculatus_F_contig1012.145.1|Name=mRNA_H-canaliculatus_F_contig1012.145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5281bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:160..5440- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1012:160..5440- >mRNA_H-canaliculatus_F_contig1012.145.1 ID=mRNA_H-canaliculatus_F_contig1012.145.1|Name=mRNA_H-canaliculatus_F_contig1012.145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1362bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1012:160..5440- (Hapterophycus canaliculatus Oshoro5f female)back to top |