mRNA_H-canaliculatus_F_contig10107.140.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: D7G0F5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0F5_ECTSI) HSP 1 Score: 559 bits (1441), Expect = 9.020e-186 Identity = 313/372 (84.14%), Postives = 332/372 (89.25%), Query Frame = 1 Query: 1 GMDDPTDPRPSECRRVLNGDQSRALARAALGCLGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLLEAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLCRLLTASPSPADAQAVLGRRLERLPAVLAALAEMAGSDLVGPEVRQQVGQTILMLQRGEAH-GNVAAGAVAVAGEGVPLESFAAAAAGLGPERKSWLDAAAAEFTALCHRV 1113 GMDDP DPRPS CRRVLN DQSR LARAALGCLG+SLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAF+ELLLPSVLEMARPDSL EDRKVAVHVLDHALEFA+PA +LPSVVPLLLEA +D +PSVSLPA FGVGVSA+TYGP FAPFSGQ+LKVLVEVILRPDAR DRE ATDNAVSALG+LLEAQR+TLS TGVGGEE VGRAW +WLGYMPLRAD+EEAEKVA+QLCRLLTAS S ADA+A+LG RLERLP LAALAEMAGS+L+GPEVRQQVGQ ILMLQ G H G V G G+ VP+ESFAAAAAGLG ERKSWLDAAAAEFTALCHRV Sbjct: 971 GMDDPADPRPSTCRRVLNEDQSRVLARAALGCLGQSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFEELLLPSVLEMARPDSLPEDRKVAVHVLDHALEFANPATCVILPSVVPLLLEACTDQAPSVSLPAFFGVGVSAATYGPGFAPFSGQALKVLVEVILRPDARHDDREMATDNAVSALGNLLEAQRDTLSNPETGVGGEEAVGRAWGVWLGYMPLRADDEEAEKVAEQLCRLLTASSSLADARAILGSRLERLPLALAALAEMAGSELIGPEVRQQVGQAILMLQAGGGHSGGVLDGG---GGDRVPVESFAAAAAGLGAERKSWLDAAAAEFTALCHRV 1339
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: A0A397DAN5_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DAN5_9STRA) HSP 1 Score: 129 bits (324), Expect = 5.020e-30 Identity = 103/292 (35.27%), Postives = 148/292 (50.68%), Query Frame = 1 Query: 46 VLNGDQSRALARAALGCLGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLL---EAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLCRLLTASPSPADAQAVLGRRLERLPAVLAALAEMAGSDLVGPE 912 +LN Q L L L S +RRA+RRA A E++D+ E +L LA+ LG L +TH FFP FQ+ LL VLEM +P L EDRK+AV+++D LE PA L + VPLLL + P + A +G+ +SA G AF P+ ++++L ++ DA + +ATDNAVSALGS+L ++ +TL + WL +PLR D EE+ + Q++C + AS VL +P VL+ LAE+ L P+ Sbjct: 126 LLNHAQLSQLVEGLLIVLAESFQRRAVRRARK-AIEEFDDEENEEDLDNDATEAQLQFILADCLGNLAETHPSRFFPVFQDTLLDKVLEMVQPHCLPEDRKLAVYLVDDVLEHCEPARDH-LGTFVPLLLNCVASEYPPLRQAASYGLSLSARLGGAAFVPYVNPTVELLWTLVHSADAWEPFMVNATDNAVSALGSILLHFDSLPSTL----------------FPQWLALLPLRGDVEESAALIQRVCAAVLASHK------VLSEDPSNVPRVLSLLAEVLSLQLFEPD 393
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: A0A024TYE0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TYE0_9STRA) HSP 1 Score: 131 bits (330), Expect = 8.490e-30 Identity = 107/296 (36.15%), Postives = 153/296 (51.69%), Query Frame = 1 Query: 22 PRPSECRRVLNGDQSRALARAALGCLGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLL---EAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLCRLLTASPSPADAQAVLGRRLERLPAVLAALAEMAGSDL 900 P+PS+ +LN Q L L L S +RRA+RRA A E++D+ E +L LA+ LG L +TH FFP FQE LL VLEM +P L EDRK+AV+++D LE PA L + VPLLL + P + A +G+ ++A G AFAP+ ++++L ++ DA + +ATDNAVSALGS+L ++ +TL + WL +PLR D EE+ + Q+LC + AS VL +P+VL+ LAE+ L Sbjct: 814 PKPSKVE-LLNHAQLSQLVEGLLIVLAESFQRRAVRRARK-AIEEFDDEENEAELDNDATEAQLQFILADCLGNLAETHPSRFFPVFQETLLDKVLEMVQPHCLPEDRKLAVYLVDDVLEHCEPAREQ-LATFVPLLLNCVASDYPPLRQAASYGLSLAARLGGGAFAPYVNSTVELLWTLVHGADAWEPFMLNATDNAVSALGSILLHFDSLPSTL----------------FPQWLALLPLRGDVEESAALVQRLCAAVHAS------HRVLSDYPSNVPSVLSLLAEILSLQL 1084
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: A0A485LSU1_9STRA (Aste57867_25060 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSU1_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.150e-29 Identity = 107/299 (35.79%), Postives = 149/299 (49.83%), Query Frame = 1 Query: 46 VLNGDQSRALARAALGCLGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLL---EAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLC-------RLLTASPSPADAQAVLGRRLERLPAVLAALAEMAGSDLVGPE 912 +LN Q L L L S +RRA+RRA A E++D+ E +L LA+ LG L +TH FFP FQE L+ VLEM +P L EDRK+AV+++D LE PA A L + VPLLL + P + A +G+ + A GPAFAP+ S+++L ++ DA + +ATDNAVSALGS+L + +TL + WL +PLR D EE+ + Q+LC RLL PS +P +L+ LAE+ L P+ Sbjct: 815 LLNHAQLAQLVEGLLIVLAESFQRRAVRRARK-AIEEFDDEENEEDLDNDATEAQLQFILADCLGNLAETHKTRFFPVFQETLMDKVLEMVQPHCLPEDRKLAVYLVDDVLEHCEPAL-AHLDTFVPLLLNCVASDYPPLRQAASYGLSLCARLAGPAFAPYLNASVELLWNLVHGADAWEPFMLNATDNAVSALGSMLLHYDGLPSTL----------------FPQWLALLPLRGDVEESAALVQRLCAAAAVPHRLLVEDPS-------------NVPRLLSLLAEILSLQLFEPD 1082
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: A0A425DM62_9STRA (RGS domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DM62_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.340e-29 Identity = 104/292 (35.62%), Postives = 149/292 (51.03%), Query Frame = 1 Query: 46 VLNGDQSRALARAALGCLGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLL---EAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLCRLLTASPSPADAQAVLGRRLERLPAVLAALAEMAGSDLVGPE 912 +LN Q L L L S +RRA+RRA A E++D+ E +L LA+ LG L +TH FFP FQ+ LL VLEM +P L EDRK+AV+++D LE PA L + VPLLL + P + A +G+ +SA G AFAP+ ++++L ++ DA + +ATDNAVSALGS+L ++ +TL + WL +PLR D EE+ + Q++C + AS VL +P VL+ LAE+ L P+ Sbjct: 176 LLNHAQLSQLVEGLLIVLAESFQRRAVRRARK-AIEEFDDEENEEDLDNDATEAQLQFILADCLGNLAETHPSRFFPVFQDTLLDKVLEMVQPHCLPEDRKLAVYLVDDVLEHCEPARGH-LGTFVPLLLNCVASEYPPLRQAASYGLSLSARLGGAAFAPYVNPTVELLWTLVHSADAWEPFMVNATDNAVSALGSILLHFDSLPSTL----------------FPQWLALLPLRGDVEESAALIQRVCAAVLASHK------VLSEDPSNVPRVLSLLAEVLSLQLFEPD 443
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: W4FLH2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLH2_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.550e-29 Identity = 104/292 (35.62%), Postives = 149/292 (51.03%), Query Frame = 1 Query: 46 VLNGDQSRALARAALGCLGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLL---EAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLCRLLTASPSPADAQAVLGRRLERLPAVLAALAEMAGSDLVGPE 912 +LN Q L L L S +RRA+RRA A E++D+ E +L LA+ LG L +TH FFP FQ+ LL VLEM +P L EDRK+AV+++D LE PA L + VPLLL + P + A +G+ +SA G AFAP+ ++++L ++ DA + +ATDNAVSALGS+L ++ +TL + WL +PLR D EE+ + Q++C + AS VL +P VL+ LAE+ L P+ Sbjct: 825 LLNHAQLSQLVEGLLIVLAESFQRRAVRRARK-AIEEFDDEENEEDLDNDATEAQLQFILADCLGNLAETHPSRFFPVFQDTLLDKVLEMVQPHCLPEDRKLAVYLVDDVLEHCEPARGH-LGTFVPLLLNCVASEYPPLRQAASYGLSLSARLGGAAFAPYVNPTVELLWTLVHSADAWEPFMVNATDNAVSALGSILLHFDSLPSTL----------------FTQWLALLPLRGDVEESAALIQRVCAAVLASHK------VLSEDPSNVPRVLSLLAEVLSLQLFEPD 1092
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: A0A397DPH4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DPH4_9STRA) HSP 1 Score: 129 bits (324), Expect = 3.420e-29 Identity = 103/292 (35.27%), Postives = 148/292 (50.68%), Query Frame = 1 Query: 46 VLNGDQSRALARAALGCLGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLL---EAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLCRLLTASPSPADAQAVLGRRLERLPAVLAALAEMAGSDLVGPE 912 +LN Q L L L S +RRA+RRA A E++D+ E +L LA+ LG L +TH FFP FQ+ LL VLEM +P L EDRK+AV+++D LE PA L + VPLLL + P + A +G+ +SA G AF P+ ++++L ++ DA + +ATDNAVSALGS+L ++ +TL + WL +PLR D EE+ + Q++C + AS VL +P VL+ LAE+ L P+ Sbjct: 363 LLNHAQLSQLVEGLLIVLAESFQRRAVRRARK-AIEEFDDEENEEDLDNDATEAQLQFILADCLGNLAETHPSRFFPVFQDTLLDKVLEMVQPHCLPEDRKLAVYLVDDVLEHCEPARDH-LGTFVPLLLNCVASEYPPLRQAASYGLSLSARLGGAAFVPYVNPTVELLWTLVHSADAWEPFMVNATDNAVSALGSILLHFDSLPSTL----------------FPQWLALLPLRGDVEESAALIQRVCAAVLASHK------VLSEDPSNVPRVLSLLAEVLSLQLFEPD 630
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: A0A5D6Y7A1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7A1_9STRA) HSP 1 Score: 126 bits (317), Expect = 4.250e-28 Identity = 107/289 (37.02%), Postives = 151/289 (52.25%), Query Frame = 1 Query: 49 LNGDQSRALARAALGCLGRSLRRRALRRAEATA--SEDWDEXXXXXXXXA-----GEE--EVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEA--SSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLLEAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLCRLLTASPSPADAQAVLGRRLERLPAVLAALAE 882 LN Q R L L LG S +RRA+ RA+ S+D+++ XXXXX G E E EL + + LG L K+HGEAFFP FQ +L ++E+A LAEDRK+A+++LD LE A L + +PLLL+ +SD P + + +G+G+ A FAP++ L +L V++ P ARQ +ATDNAVSA G + E Q + + WL +PLR D EE+ V ++L R + + VLG+ L L AV+A AE Sbjct: 809 LNDAQLRELVNGLLLVLGDSFQRRAVHRAQQAVDDSDDYEDAVGXXXXXXXXXXXGSESLEQELQFVMGDTLGSLAKSHGEAFFPVFQAILWEKIVELAAEHCLAEDRKLALYILDDVLEHCGEPAMQHLDAFLPLLLDVLKTSDGYPPLVQASAYGIGLCARLGRDRFAPYAETCLTLLRGVLMHPKARQAPNLNATDNAVSAFGLICEHQAGVVDAV-----------TLFPQWLSMLPLRGDLEESVAVMKRLLRYVNERN-----ELVLGKDLGHLSAVVAIFAE 1081
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: A0A6G0X2Q5_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2Q5_9STRA) HSP 1 Score: 119 bits (297), Expect = 1.710e-25 Identity = 91/250 (36.40%), Postives = 129/250 (51.60%), Query Frame = 1 Query: 46 VLNGDQSRALARAALGCLGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLL---EAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLC 786 +LN Q L L L S +RRA+RRA A E+ DE E +L LA+ LG L +TH + FFP FQE LL VLEM +P L EDRK+AV+++D LE P+ S L + VP+LL + P + A +G+ + A AF P+ ++++L ++ DA + +ATDNAVSALGS+L ++ TL + WL +PLR D EE+ + Q+LC Sbjct: 813 LLNHAQLSQLVEGLLIVLAESFQRRAVRRARK-AIEELDEEENEEDLDNDATEAQLQFILADCLGSLAQTHPQRFFPVFQETLLDKVLEMVQPHCLPEDRKLAVYLVDDVLEHCEPSRSH-LDTFVPILLNCVASDYPPLRQAASYGLSLCARLGQTAFTPYLNPAVELLWNLVHAADAWEPFMLNATDNAVSALGSMLLHFDSLPPTL----------------FPQWLALLPLRGDVEESAALIQRLC 1044
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Match: I0Z759_COCSC (ARM repeat-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z759_COCSC) HSP 1 Score: 117 bits (294), Expect = 4.210e-25 Identity = 88/272 (32.35%), Postives = 141/272 (51.84%), Query Frame = 1 Query: 97 LGRSLRRRALRRAEATASEDWDEXXXXXXXXAGEEEVELHVNLAELLGFLFKTHGEAFFPAFQELLLPSVLEMARPDSLAEDRKVAVHVLDHALEFAHPAASAVLPSVVPLLLEASSDPSPSVSLPALFGVGVSASTYGPAFAPFSGQSLKVLVEVILRPDARQGDRESATDNAVSALGSLLEAQRNTLSMAGTGVGGEEGVGRAWELWLGYMPLRADEEEAEKVAQQLCRLLTASPSPADAQAVLGRRLERLPAVLAALAEMAGSDLVGPE 912 L S++RRA R+ +A ED+DE E E +L + +L + K HG++ P + LLPS+ + P E+R+VA+ +LD LEF+ A+ L +P LLE D +V +++G+G+ A+ + AF P +L ++ ++ PD R+ D E AT+NAV+ALG +LE + + ++W++W+ +PLR D+ EA V QL R L AS D + VLG + L ++A LA+ G G + Sbjct: 793 LADSMKRRAERQLRRSA-EDFDEEEAEALEEENEGEEDLLDQFSSVLSAVLKRHGDSAMPLV-DTLLPSLAPLLDPQRTPEERRVAICILDDILEFSPAGAAKYLSYSLPHLLEGCKDKDANVRQCSVYGLGILAAQHQEAFRPTVPTALVHILGIVTAPDGREEDNEMATENAVAALGKVLEFHGAAIEASA--------AAQSWDVWISSLPLREDKVEARHVHAQLVRHLQAS----DVR-VLGENNKNLGKIVAVLAKCLGKGSGGKD 1049 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10107.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10107.140.1 >prot_H-canaliculatus_F_contig10107.140.1 ID=prot_H-canaliculatus_F_contig10107.140.1|Name=mRNA_H-canaliculatus_F_contig10107.140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=371bp MDDPTDPRPSECRRVLNGDQSRALARAALGCLGRSLRRRALRRAEATASEback to top mRNA from alignment at H-canaliculatus_F_contig10107:468..4665+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10107.140.1 ID=mRNA_H-canaliculatus_F_contig10107.140.1|Name=mRNA_H-canaliculatus_F_contig10107.140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10107:468..4665+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10107:468..4665+ >mRNA_H-canaliculatus_F_contig10107.140.1 ID=mRNA_H-canaliculatus_F_contig10107.140.1|Name=mRNA_H-canaliculatus_F_contig10107.140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2226bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10107:468..4665+ (Hapterophycus canaliculatus Oshoro5f female)back to top |