Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 724 |
| Cds size | 420 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928638.9481683-UTR-H-canaliculatus_F_contig1010:25623..25811 | 1622928638.9481683-UTR-H-canaliculatus_F_contig1010:25623..25811 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1010 25624..25811 + |
| 1696845507.6478267-UTR-H-canaliculatus_F_contig1010:25623..25811 | 1696845507.6478267-UTR-H-canaliculatus_F_contig1010:25623..25811 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1010 25624..25811 + |
| 1622928638.99856-UTR-H-canaliculatus_F_contig1010:26231..26347 | 1622928638.99856-UTR-H-canaliculatus_F_contig1010:26231..26347 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1010 26232..26347 + |
| 1696845507.666041-UTR-H-canaliculatus_F_contig1010:26231..26347 | 1696845507.666041-UTR-H-canaliculatus_F_contig1010:26231..26347 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1010 26232..26347 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928638.9778166-CDS-H-canaliculatus_F_contig1010:25811..26231 | 1622928638.9778166-CDS-H-canaliculatus_F_contig1010:25811..26231 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1010 25812..26231 + |
| 1696845507.6576316-CDS-H-canaliculatus_F_contig1010:25811..26231 | 1696845507.6576316-CDS-H-canaliculatus_F_contig1010:25811..26231 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1010 25812..26231 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1010.133.1 >prot_H-canaliculatus_F_contig1010.133.1 ID=prot_H-canaliculatus_F_contig1010.133.1|Name=mRNA_H-canaliculatus_F_contig1010.133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MPSVSDAQPIFLRRSEPVRHCTCTAVDGTRRGVWIQRALWNSDVLVGHGT
TGQCSHPRDAVVANASSHHHVRNANMARALRRKQRAISVDLSFLTSSVFL
VLRIVPFFQRLFVSVGFSTRQTRPPRRLLRIARVERLGE* back to topmRNA from alignment at H-canaliculatus_F_contig1010:25624..26347+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1010.133.1 ID=mRNA_H-canaliculatus_F_contig1010.133.1|Name=mRNA_H-canaliculatus_F_contig1010.133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=724bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1010:25624..26347+ (Hapterophycus canaliculatus Oshoro5f female)
AGATCATGCGCGTGCCGCGTGCCGGCAGTTGAGGACGCGCAGCAGATCAA
GAAGAGAACAAAAAACTCCTTGGACACTTGTTTCACAACGAGACGTTGTC
CCCATCGTCTGGGCTCCGTCTCTCGCTAGGCTGGAGCGATGGTCGATCCG
TTCGGTTCTGTGGGGGCGACTTGCGTCGAAAGCGCGGCATGCCTTCGGTG
TCCGATGCACAGCCGATCTTTCTCAGGAGATCTGAACCTGTCCGGCACTG
TACTTGTACCGCTGTAGATGGTACACGACGAGGCGTCTGGATCCAACGCG
CGTTGTGGAACAGCGACGTCCTTGTAGGCCACGGTACAACAGGACAGTGC
TCCCATCCGCGTGACGCGGTAGTGGCAAACGCATCAAGCCATCACCACGT
TCGAAACGCCAACATGGCACGCGCGCTTCGCCGAAAGCAACGAGCAATCT
CAGTCGACCTCTCGTTCTTGACTTCAAGTGTCTTCCTCGTGTTGCGGATC
GTTCCTTTCTTTCAGCGTCTTTTTGTCAGCGTCGGCTTTTCCACGCGGCA
AACTCGCCCGCCAAGACGTCTACTCCGAATCGCCCGAGTCGAACGCCTCG
GTGAGTGAGCCGATCTTCGCTGCTGTTCCCCCCCTCAACGCCGACCTCCC
TTCGCTCCTGCACCCATCCCCCCGGCAGGACGGCGACATGGTCAGGTACG
ACTCGGAGGAAGAGTTCGTCGCAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1010:25624..26347+ >mRNA_H-canaliculatus_F_contig1010.133.1 ID=mRNA_H-canaliculatus_F_contig1010.133.1|Name=mRNA_H-canaliculatus_F_contig1010.133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1010:25624..26347+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTCGGTGTCCGATGCACAGCCGATCTTTCTCAGGAGATCTGAACC
TGTCCGGCACTGTACTTGTACCGCTGTAGATGGTACACGACGAGGCGTCT
GGATCCAACGCGCGTTGTGGAACAGCGACGTCCTTGTAGGCCACGGTACA
ACAGGACAGTGCTCCCATCCGCGTGACGCGGTAGTGGCAAACGCATCAAG
CCATCACCACGTTCGAAACGCCAACATGGCACGCGCGCTTCGCCGAAAGC
AACGAGCAATCTCAGTCGACCTCTCGTTCTTGACTTCAAGTGTCTTCCTC
GTGTTGCGGATCGTTCCTTTCTTTCAGCGTCTTTTTGTCAGCGTCGGCTT
TTCCACGCGGCAAACTCGCCCGCCAAGACGTCTACTCCGAATCGCCCGAG
TCGAACGCCTCGGTGAGTGAATGCCTTCGGTGTCCGATGCACAGCCGATC
TTTCTCAGGAGATCTGAACCTGTCCGGCACTGTACTTGTACCGCTGTAGA
TGGTACACGACGAGGCGTCTGGATCCAACGCGCGTTGTGGAACAGCGACG
TCCTTGTAGGCCACGGTACAACAGGACAGTGCTCCCATCCGCGTGACGCG
GTAGTGGCAAACGCATCAAGCCATCACCACGTTCGAAACGCCAACATGGC
ACGCGCGCTTCGCCGAAAGCAACGAGCAATCTCAGTCGACCTCTCGTTCT
TGACTTCAAGTGTCTTCCTCGTGTTGCGGATCGTTCCTTTCTTTCAGCGT
CTTTTTGTCAGCGTCGGCTTTTCCACGCGGCAAACTCGCCCGCCAAGACG
TCTACTCCGAATCGCCCGAGTCGAACGCCTCGGTGAGTGA back to top
|