mRNA_H-canaliculatus_F_contig1010.132.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: D7FT16_ECTSI (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT16_ECTSI) HSP 1 Score: 374 bits (960), Expect = 3.510e-113 Identity = 356/931 (38.24%), Postives = 402/931 (43.18%), Query Frame = 1 Query: 1 MAFKTAPLKVKITKADGTSELRRLGFIFDSS--QLENSGLSQTAQQEQMKVEGYHLSLCKFLLRSLRDLYPDLPVGEFSELAIFSAKDEDGDMVRYDSEEEFVAAMTYNSWESCLRVEVTVLKPAPPTVAAKAEPAAQAEXADQEPSASGNSVYGDADARRSETGSVLSFETDASASWAASSSAASXXXXXPSTPAVSEARSLAPSAHALAPFREEAEVETGTGGAMTADEGSVSGAADVPASSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAGFGDAATPAKAFLTQVLPGLADVLARSMYAAQWVPNGVPDTVAAASSAARDGENPLAPAAEGIATAAXXXXXXXXXXXXXTAHSVANTVQAGAESAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGPGQAWRTARSYPQQGGWGEGRRNGHRWMRDLARRQQQXXQLDSAASGASGVGIFPPGVEFVRASGNDHGNSGGLGSRPPWCGPRMQRRREEPVPTPXXXXXXAKDAVQHKEAEEXXXXXXXXXXXXEAATPPVSVASSEAGEPLADDKAEVEKPAVTSDEPAVSSVEQPSPSAEYHDLLAASMRSLASSMTASFPGPQDGGAGKPRGSXXXXXXXXXXXXXXXXKPMARFVTDVSVSDGSPLPPNTRFVKTWCLRNDGPVTFPPGCKMMPVGGDLMAGPEEGVAVEQRAPGEEFHVSVNLTTPPLSGRYIGYWRLQTVEGQKFGHRVWADVLVTGGTADLVTEGTMDGDWDLVNMQRLSKAVEDTG-------SAVVEPSVPENIPTSVETPTTASXXXXXXXVARSSPPTKTDGTPMETGTSSASDTDGGFEESKSSDEAGLGEG---AAAAAINQQQASVQTPAAQAASPSSVPQDMATKWHRELCSLAEMGFENGARNVQLLEKHVVESGKPGMER 2757
M TAP+KVKITK DGTSELRRL F +D S Q GL +Q GYHLSLCKFLLRSL LYPDLP+G+FSELA+F+ KDED DMVR+DSEEEFV+AM+Y SWE CLRVEVT LKP+ X +EP+AS ++ SE SV+SF VS + XXXXXXXXXXXXXXXXXXXXXX A PA ARS+ A P DT AA + D E +A A A S+A G SA+ T S+P G S +S G A+G NSG G +S A KPMARFVTDVSV+DGSPLPPNTRFVKTWC+RNDGPVTFP GCK++PVGGDLMAGPE+GVAVEQR PGEEFHVSV LTTPPLSGRYIGYWRL+T EGQKFGHRVWADVLVTGGTADLV EGT+DGDWDLVNMQRLSKAVEDTG +A VEP+ PENIP++V+TP+ A A++ + S D GFEESKS + A + +QQA+ P A S SVP MATKWHRELCSLAEMGFEN RNVQLLEKHVV SG PGMER
Sbjct: 1 MVLTTAPVKVKITKDDGTSELRRLAFGYDDSFQQASYGGLFDEQRQ------GYHLSLCKFLLRSLGGLYPDLPLGKFSELAVFTVKDEDDDMVRFDSEEEFVSAMSYKSWEGCLRVEVTALKPSXXXXXXXXXXXXXXXXX-EEPAASASNDP----TPMSEIASVMSF---------------------------------------------------------------VSNMSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSEDAPPA------------------------ARSLAAPVPAPAPPVDTAAAVEAHGDDEEAMMAAA---------------------VAASIAEIT--GDSSAS--------------------------------------------TDASFPAPG---------------------------SGSSAQEGG---------ATAAGKPSRNSGDTGGN----------------------------------------------------------------------------------------------------------KSSA-------------------------------------KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPSGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTADLVDEGTVDGDWDLVNMQRLSKAVEDTGKDDAAAAAAAVEPTAPENIPSTVQTPSYAPGQAWDPASAKAQ--------------DADSGADRGFEESKSXXXXXXXXXXXXSVADPLPEQQAA---PVVVAPSAPSVPPTMATKWHRELCSLAEMGFENTQRNVQLLEKHVVNSGSPGMER 570
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: A0A6H5JI15_9PHAE (ZZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI15_9PHAE) HSP 1 Score: 237 bits (605), Expect = 7.190e-62 Identity = 309/779 (39.67%), Postives = 350/779 (44.93%), Query Frame = 1 Query: 1 MAFKTAPLKVKITKADGTSELRRLGFIFDSS--QLENSGLSQTAQQEQMKVEGYHLSLCKFLLRSLRDLYPDLPVGEFSELAIFSAKDEDGDMVRYDSEEEFVAAMTYNSWESCLRVEVTVLKPAPPTVAAKAEPAAQAEXADQEPSASGNSVYGDADARRSETGSVLSFETDASASWAASSSAASXXXXXP---------------STPAVSEARSLAPSAHALAP-FREEAEVETGTGGAMTADEGSVSGAADVPASSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAGFGDAATPAKAFLTQVLPGLADVLARSMYAAQWVPNGVPDTVAAASSAARDG-----------------------------------------------------------------------ENPLAPAA-----------------EGIATAAXXXXXXXXXXXXXTAHS-----------------------VANTVQAGAESAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----RAYGPGQAWRTARSYPQQGGWGEGRRNGHRWMRDLARRQQQXXQLDSAASGASGVGIFPPGVEFVRASGNDHGNSGGLG-SRPPWCGPRMQRRREEPVPTPXXXXXXAKDAVQHKEAEEXXXXXXXXXXXXEAATPPVSVASSEAGEPLA-----------------DDKAEVEKPAVTSDEPAVSSVEQPS-----PSAEYHDLLAASMRSLASSMTASFPGP------QDGGA--GKP 1845
M TAP+KVKITK D TSELRRL F +D S Q + GL +Q GYHLSLCKFLLRSL LYP+LPVG+FSELA+F+ DGDMVR+DSEEEFVAAM+Y SWE CLRVEVT LKP+P AA EPA+ A+ A S ++ SET SV+SF ++ S S XXXXX S A ARSLA ALAP A VE XXXXXXXXXXXXXXXXXXXX AAPAGFG TPA+AFLTQVLPGLADVLARS+YAA +GVP+T A++S D + P AP G+ A + + QA A XXXXXXXXXXXXX R + PGQ WR RS PQ GGWGEGRR GHRWMRDLARRQQQ Q + AASG +G PPGVE VR GN GG+G +R PWCGPRMQRRR++ P XXXXXX K+A PPV A + A VE+PA T+ PS EYHD+LAASMRSLASSMTASFP P Q+GGA GKP
Sbjct: 1 MVLTTAPVKVKITKDDETSELRRLAFGYDDSFQQASSGGLFDEQRQ------GYHLSLCKFLLRSLGGLYPNLPVGKFSELAVFT----DGDMVRFDSEEEFVAAMSYKSWEGCLRVEVTALKPSPRPPAADPEPASVADAAAXXXSDELAAIASSDPTPMSETASVMSFVSNMSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSEDAPPVARSLAAPVPALAPPVDTAAAVEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSSLPPAAPAGFGGPGTPARAFLTQVLPGLADVLARSIYAANRGSDGVPNTSPASASEGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPEVPRTVQPPSAPTPXXXXXXXXXXXXXXVVHHGVKCDACDVCPIIGTRYKCAVRADFDLCEECERAPVGQGSPFPFLKIRTPTQAPAAIVCLLKHDQPGTAQEAAAXXXXXXXXXXXXXDTPGSNNGGRRTFAPGQGWRC-RSNPQHGGWGEGRRKGHRWMRDLARRQQQ--QFERAASG---MGPVPPGVEVVR------GNGGGVGCNRQPWCGPRMQRRRDDD-PATXXXXXXXXGVAPKKDALAALAASLTQLFP---TPPPVGFAEKSDADNAAVAAXXXXXXXXXXXXXXXXXXXVEEPAETAXXXXXXXXXXXXXXXXPPSGEYHDMLAASMRSLASSMTASFPSPGSGSSAQEGGATAGKP 753
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: A0A6H5JHM7_9PHAE (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM7_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.220e-34 Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 1 Query: 1918 FVTDVSVSDGSPLPPNTRFVKTWCLRNDGPVTFPPGCKMMPVGGDLMAGPEEGVAVEQRAPGEEFHVS-VNLTTPPLSGR 2154
FVTDVSV+DGSPLPPNTRFVKTWC+RNDGPVTFP GCK++PVGGDLMAGPE+GVA+EQR PGEEFHVS V T P++GR
Sbjct: 44 FVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAIEQRGPGEEFHVSNVTSATGPITGR 123
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: A0A6H5JIQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ9_9PHAE) HSP 1 Score: 124 bits (311), Expect = 4.490e-29 Identity = 88/163 (53.99%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 2293 MQRLSKAVEDTG-------SAVVEPSVPENIPTSVETPTTASXXXXXXXVARSSPPTKTDGTPMETGTSSASDTDGGFEESKSSDEAGLG-EGAAAAAINQQQASVQTPAAQAASPSSVPQDMATKWHRELCSLAEMGFENGARNVQLLEKHVVESGKPGMER 2757
MQRLSKAVEDTG + VEP+ P+NIPT+VETP+ A A++ +T T + D GFEE+KSSDEA G +G A +QQA+ P A S SVP MATKWHRELCSLAEMGFEN RNVQLLEKHVV SG PGMER
Sbjct: 1 MQRLSKAVEDTGKDDTPAAATAVEPTAPDNIPTTVETPSYAPGQAWDPESAKT----------RDTDTGA----DRGFEETKSSDEATAGGDGVGYVAAPEQQAA---PVVVAPSAPSVPPTMATKWHRELCSLAEMGFENTQRNVQLLEKHVVNSGSPGMER 146
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: A0A7S3XSC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSC8_HETAK) HSP 1 Score: 124 bits (311), Expect = 5.000e-27 Identity = 60/114 (52.63%), Postives = 72/114 (63.16%), Query Frame = 1 Query: 1903 KPMARFVTDVSVSDGSPLPPNTRFVKTWCLRNDGPVTFPPGCKMMPVGGDLMAGPEEGVAVEQRAPGEEFHVSVNLTTPPLSGRYIGYWRLQTVEGQKFGHRVWADVLVTGGTA 2244
KPMARFV DV++ DG+ + P F KTW +RNDG V FP G +++ VGGDLM G V PGEEF + + L P GRYIGYWRLQ EG FGHR+W DV V G +
Sbjct: 87 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPRPVGAH--GPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 198
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: A0A6S9FPI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FPI1_HETAK) HSP 1 Score: 124 bits (311), Expect = 7.500e-26 Identity = 60/114 (52.63%), Postives = 72/114 (63.16%), Query Frame = 1 Query: 1903 KPMARFVTDVSVSDGSPLPPNTRFVKTWCLRNDGPVTFPPGCKMMPVGGDLMAGPEEGVAVEQRAPGEEFHVSVNLTTPPLSGRYIGYWRLQTVEGQKFGHRVWADVLVTGGTA 2244
KPMARFV DV++ DG+ + P F KTW +RNDG V FP G +++ VGGDLM G V PGEEF + + L P GRYIGYWRLQ EG FGHR+W DV V G +
Sbjct: 268 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPRPVGAH--GPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 379
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: A0A7S4D636_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D636_HETAK) HSP 1 Score: 124 bits (311), Expect = 2.880e-25 Identity = 60/114 (52.63%), Postives = 72/114 (63.16%), Query Frame = 1 Query: 1903 KPMARFVTDVSVSDGSPLPPNTRFVKTWCLRNDGPVTFPPGCKMMPVGGDLMAGPEEGVAVEQRAPGEEFHVSVNLTTPPLSGRYIGYWRLQTVEGQKFGHRVWADVLVTGGTA 2244
KPMARFV DV++ DG+ + P F KTW +RNDG V FP G +++ VGGDLM G V PGEEF + + L P GRYIGYWRLQ EG FGHR+W DV V G +
Sbjct: 477 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPRPVGAH--GPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 588
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: A0A7S1G709_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G709_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.920e-23 Identity = 55/106 (51.89%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 1912 ARFVTDVSVSDGSPLPPNTRFVKTWCLRNDGPVTFPPGCKMMPVGGDLMAGPEEGVAVEQRAPGEEFHVSVNLTTPPLSGRYIGYWRLQTVEGQKFGHRVWADVLV 2229
A FV V+ + + P TRF K W LRN G V +P G +++ VG M+GP EGVAVE PG E V+V LT P SGR+ YWRL T +G +FGHRVWADV+V
Sbjct: 38 AHFVEHVTFQVKTTVAPGTRFEKVWRLRNVGDVQWPEGTRLVHVGNHDMSGPTEGVAVEAAHPGAEVDVAVELTAPAESGRHYSYWRLVTPDGVRFGHRVWADVVV 143
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: F4PSP5_CAVFA (ZZ-type zinc finger-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PSP5_CAVFA) HSP 1 Score: 103 bits (257), Expect = 5.640e-19 Identity = 57/150 (38.00%), Postives = 83/150 (55.33%), Query Frame = 1 Query: 1909 MARFVTDVSVSDGSPLPPNTRFVKTWCLRNDGPVTFPPGCKMMPVGGDLMAGPEEGVAVEQRAPGEEFHVSVNLTTPPLSGRYIGYWRLQTVEGQKFGHRVWADVLVTGGTADLVTEGTMDGDWDLVNMQRLSKAVEDTGSAVVEPSVPE 2358
++R+V+D++ DGS L P F K W LRNDG +P + V GD M+ P+ GV VE PG + V++NL P GRYIGYW+L T EG +G R++ADV V G ++ E + + + V + +AV +PS+ E
Sbjct: 324 LSRYVSDMATKDGSLLTPGQGFTKIWRLRNDGNQQWPENTTLSFVSGDRMSSPD-GVTVEPALPGNDVDVAINLVAPSTPGRYIGYWKLFTPEGNAYGQRLFADVYVEGKKEEVAVEQVKPAVVEEKKVVEKVEPVVNADAAVDQPSIEE 472
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Match: D3B745_POLPP (ZZ-type zinc finger-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B745_POLPP) HSP 1 Score: 100 bits (250), Expect = 3.520e-18 Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1 Query: 1903 KPMARFVTDVSVSDGSPLPPNTRFVKTWCLRNDGPVTFPPGCKMMPVGGDLMAGPEEGVAVEQRAPGEEFHVSVNLTTPPLSGRYIGYWRLQTVEGQKFGHRVWADVLV 2229
K +AR+V+D++V DGS PN F K W +RNDG +P ++ GD + P+ G+ V+ PG++ V +NLTTP GRYIGYW+L T EG FG R++ D+ V
Sbjct: 288 KHLARYVSDITVKDGSVFGPNVPFTKIWRIRNDGREAWPENSTLVWSSGDRLGSPD-GITVDPVLPGQDIDVGLNLTTPSAPGRYIGYWKLVTPEGLGFGQRLYVDIFV 395 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1010.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1010.132.1 >prot_H-canaliculatus_F_contig1010.132.1 ID=prot_H-canaliculatus_F_contig1010.132.1|Name=mRNA_H-canaliculatus_F_contig1010.132.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1040bp MAFKTAPLKVKITKADGTSELRRLGFIFDSSQLENSGLSQTAQQEQMKVEback to top mRNA from alignment at H-canaliculatus_F_contig1010:24399..31415+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1010.132.1 ID=mRNA_H-canaliculatus_F_contig1010.132.1|Name=mRNA_H-canaliculatus_F_contig1010.132.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7017bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1010:24399..31415+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1010:24399..31415+ >mRNA_H-canaliculatus_F_contig1010.132.1 ID=mRNA_H-canaliculatus_F_contig1010.132.1|Name=mRNA_H-canaliculatus_F_contig1010.132.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6240bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1010:24399..31415+ (Hapterophycus canaliculatus Oshoro5f female)back to top |