mRNA_H-canaliculatus_F_contig101.128.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig101.128.1 vs. uniprot
Match: A0A6H5JLK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK5_9PHAE) HSP 1 Score: 340 bits (873), Expect = 2.360e-105 Identity = 231/491 (47.05%), Postives = 270/491 (54.99%), Query Frame = 3 Query: 207 MSAFQTFAAPPGRHQHQHWQQVSPFSSPTLVGSAASLSCPRRDHLRRRRHLGSCCRQSGAHGAIHPLTFGAKYGREGRSAI--------EGHPSLLGCLASPTSTPEESSGAAPGSAGTS--GSEETAESGGSAA------VGSDARRLGGPTEPGTEGVRGRPVPGWDVGYEATGPLDGRVSDRSRGGXXXXXXXXXXXXXXXXXXXXGGPTQGRLRLKWGFDLDVPVPSELEALVKGPWDPQGDVWARQLDIAAQVIERSGGVVFMEQLAPVLNPREGPPQWFRENVVASGGGY-------------GGFADKSKEPTGLDNTAQTLED--------------------YETDQLNAEGVKGFSTTPEVLQFEEVPKLLKALPKMMPDQGPKVVRDFFQRTALSGLALFLSMWLLLGQLIFHSSPTWLFTGPAYLVWVGLDDTLRRSRDTSARQRDRWRGQWADVCRGDGEAMWRKRAAARSRARRLRD 1532
MSA + F + P QH W P SP + A ++ + R SCCR+SG G L G + E RSA E + L LAS + A+ G+ GT+ G A SG A VGS R G E GT GRP G D + P S RSR GRLRLKWG DLD+PVP LEALVKGPWDPQGD+W RQLD+AAQVI RSGGVVFMEQLAP+LNPREGP +W+R A G Y GG A + L+ + + D E D + E G + PEVLQFEEVP+LL++LPKM+PDQGPKVV++FFQRTALSGLALFLSM L+LGQLIF+S P WL TGPAYLVWVGLDDTLRRSR+ SA+QRD+WR QWADVCRGDG+A+WRKRAAAR ARRL D
Sbjct: 1 MSALEAFVSWPV--QHHRWLPYRPLPSPAISALATNVGGDNGAAVGLSRRT-SCCRESGGRGTDQVL-LGLWFSDENRSASFWRKRRRQEPYGRLWLPLASSATXXXXXXXASIGNDGTAAKGDGAPASSGNEVASDESRPVGSGGRMAGDMFEFGTNRRTGRPALGRDEANKTARPSKDESSGRSR---------------------RKSSAPGRLRLKWGVDLDIPVPVALEALVKGPWDPQGDMWERQLDMAAQVISRSGGVVFMEQLAPILNPREGPREWYRVCADAGGDFYEKGDKSGISVDAVGGEALVLRVLLDLNGSPEVTSDGDILYVFPGFARGKRGREGNIEADYRSEESETGSTAAPEVLQFEEVPRLLESLPKMIPDQGPKVVKEFFQRTALSGLALFLSMCLVLGQLIFNSWPIWLATGPAYLVWVGLDDTLRRSRNRSAKQRDQWREQWADVCRGDGDAIWRKRAAARVMARRLDD 466
BLAST of mRNA_H-canaliculatus_F_contig101.128.1 vs. uniprot
Match: A0A6H5K1U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U7_9PHAE) HSP 1 Score: 268 bits (686), Expect = 2.140e-80 Identity = 157/284 (55.28%), Postives = 176/284 (61.97%), Query Frame = 3 Query: 837 VPVPSELEALVKGPWDPQGDVWARQLDIAAQVIERSGGVVFMEQLAPVLNPREGPPQWFRENVVASGG----GYG-------------------------------------------GFADKSK--EPTGLDNTAQTLEDYETDQLNAEGV-KGFSTTPEVLQFEEVPKLLKALPKMMPDQGPKVVRDFFQRTALSGLALFLSMWLLLGQLIFHSSPTWLFTGPAYLVWVGLDDTLRRSRDTSARQRDRWRGQWADVCRGDGEAMWRKRAAARSRARRLRDEG 1538
+ VP LE LV+GPWDPQ D W RQLD+AAQV++RSGGVVFMEQLAPVLNPREGPP+W+RE+ GG GYG GFA K + E A TLE +E +Q G K F+ TPEVLQFEEVP LL LPKM PDQGPK RTALSGLALFLS L+L QLIF S P WL GPAYL WV LDD+LRRSR SA+QRD WRGQWADVCRGDG+ +WRKR AAR RAR+LR +G
Sbjct: 8 IHVPLALEELVRGPWDPQRDTWRRQLDMAAQVVQRSGGVVFMEQLAPVLNPREGPPEWYRESATGGGGRGAAGYGKNGATDGISIEAVGGEALVLRLLFELNGAPEVTDDGDILYVFPGFAAKGEACEGRAAAGEAPTLEAFEAEQRGGGGEEKEFTATPEVLQFEEVPGLLDVLPKM-PDQGPK-------RTALSGLALFLSTCLVLEQLIFRSWPAWLAAGPAYLAWVALDDSLRRSRGKSAKQRDVWRGQWADVCRGDGDPVWRKRVAARLRARKLRGDG 283
BLAST of mRNA_H-canaliculatus_F_contig101.128.1 vs. uniprot
Match: D7FXE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE6_ECTSI) HSP 1 Score: 234 bits (597), Expect = 3.760e-66 Identity = 145/292 (49.66%), Postives = 167/292 (57.19%), Query Frame = 3 Query: 582 VGSDARRLGGPTEPGTEGVRGRPVPGWDVGYEATGPLDGRVSDRSRGGXXXXXXXXXXXXXXXXXXXXGGPTQGRLRLKWGFDLDVPVPSELEALVKGPWDPQGDVWARQLDIAAQVIERSGGVVFMEQLAPVLNPREGPPQWFRENVVASGGGY--GGFADKSKEPTG-----------LDNTAQTLED--------------------YETDQLNAEGVKGFSTTPEVLQFEEVPKLLKALPKMMPDQGPKVVRDFFQRTALSGLALFLSMWLLLGQLIFHSSPTWLFTG 1358
VGS R G E GT GRP G D Y+ S RSR GRLRLKWG DLD+PVP LEALVKGPWDPQGD+W RQLD+AAQVI RSGGVVFMEQLAP+LNPREGPP+W+R A GG Y G +D S + G L+ + + D E D + E G + PEVLQFEEVP+LL+ALPK++PDQGPKVV++ FQRTALSGLALFLSM L+LGQLIF+S P WL TG
Sbjct: 101 VGSGGRVAGDMFEFGTNRRTGRPALGRDEAYKTARSPKDESSGRSR---------------------RRSSAPGRLRLKWGVDLDIPVPVALEALVKGPWDPQGDMWKRQLDMAAQVISRSGGVVFMEQLAPILNPREGPPEWYRVCADAGGGFYEKGDKSDISVDAVGGEALVLRVLLDLNGSPEVTSDGDILYVFPGFARGKRGREGSIEADYHSEESETGSTAAPEVLQFEEVPRLLEALPKIIPDQGPKVVKELFQRTALSGLALFLSMCLVLGQLIFNSWPIWLATG 371 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig101.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig101.128.1 >prot_H-canaliculatus_F_contig101.128.1 ID=prot_H-canaliculatus_F_contig101.128.1|Name=mRNA_H-canaliculatus_F_contig101.128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=459bp MLVPSATPGPPWAMSAFQTFAAPPGRHQHQHWQQVSPFSSPTLVGSAASLback to top mRNA from alignment at H-canaliculatus_F_contig101:23268..31249- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig101.128.1 ID=mRNA_H-canaliculatus_F_contig101.128.1|Name=mRNA_H-canaliculatus_F_contig101.128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7982bp|location=Sequence derived from alignment at H-canaliculatus_F_contig101:23268..31249- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig101:23268..31249- >mRNA_H-canaliculatus_F_contig101.128.1 ID=mRNA_H-canaliculatus_F_contig101.128.1|Name=mRNA_H-canaliculatus_F_contig101.128.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2754bp|location=Sequence derived from alignment at H-canaliculatus_F_contig101:23268..31249- (Hapterophycus canaliculatus Oshoro5f female)back to top |