mRNA_H-canaliculatus_F_contig101.126.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI) HSP 1 Score: 432 bits (1110), Expect = 2.620e-145 Identity = 237/421 (56.29%), Postives = 288/421 (68.41%), Query Frame = 1 Query: 1 LVPPPVFSLV-FRSIGDHNFHALVKEAYFAFEALSQHPYGFTSYFHGHHPELLCIDGCAKIATDNVSTAQFEVARMDRHVDTDLQHVLLKMSMMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNIYRLCFSGGKSISRCSNKAAFVEGLEDLWKSAGVGNGGDR*SKLFICRPSGTTAGVGGLFAPDWVMCAHVFQLTVESPADAVDIMAHLLAQPCLLITDVPCMMAPIAEKRQPGLLENGGALPRNAEGEVSLAGMQPSGAHAHEFPDKHHLKLPPRGFPFALASTTSGADSIDKVYAVFASTETSLPLQAHVDFHALLRRAAEAAEENRQLKAVASAGGVFDASSSSQRMCELAERTLKSLHADGIYAMTLFELV 1260 LVPP L RSI DHNF +KE Y+AFEAL+QHPY F SY G PE++ IDGCAKI TDN T+QF++AR +RHVDTD QH LLK+SM+SKMVF R+R+V++AAP G NRISN M RT R KMA SP +GD+GEL+ ALGD AI+D+S+K+ DLKNIY LCF+G K ISR NK A V+ ++LW S G G+R SKLFI + GTTAGV G F PD VM A+VFQ+ ES ADAVD+ AH L P L+ITD+PCM+APIAE+ P LLEN G LPR+A+G VSL +Q GAHAHEFPD+H +K P FP S+ + +D +YAV+A SLP Q HV+F ALL+R+A +A V D SS S+R C LAE L SLH G YAMTLFE+V Sbjct: 22 LVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDV-VVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAE-----------VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVV 430
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE) HSP 1 Score: 301 bits (771), Expect = 2.130e-96 Identity = 155/251 (61.75%), Postives = 189/251 (75.30%), Query Frame = 1 Query: 34 RSIGDHNFHALVKEAYFAFEALSQHPYGFTSYFHGHHPELLCIDGCAKIATDNVSTAQFEVARMDRHVDTDLQHVLLKMSMMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNIYRLCFSGGKSISRCSNKAAFVEGLEDLWKSAGVGNGGDR*SKLFICRPSGTTAG-VGGLFAPDWVMCAHVFQLTVESPADAVDIMAHLLAQPCLL 783 RSI DHNFHAL+K+AYFAFEAL Q P+GF S+ G E+ CIDGCAKI TD+VS QF++AR +R VD DL + +LKMS++SKM F +RLRWV++AAPI GPHNR+SN M RT R +MA SP++GD GELM ALGDGAI+D+S+K + DL+NIYRLCF GK IS K V+ L+ LW+SAG G+R SKLFI +PSG+TAG V GLF D VM AHVFQ+T ESPADAVD++ HLL C L Sbjct: 60 RSIEDHNFHALIKQAYFAFEALVQ-PFGFVSFMRGRWREIFCIDGCAKICTDDVSREQFDIARAERDVDADLHNEMLKMSIISKMGFNARLRWVLEAAPIFGPHNRVSNVMYRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLVTYCTL 309
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE) HSP 1 Score: 276 bits (707), Expect = 2.150e-87 Identity = 144/252 (57.14%), Postives = 174/252 (69.05%), Query Frame = 1 Query: 34 RSIGDHNFHALVKEAYFAFEALSQHPYGFTSYFHGHHPELLCIDGCAKIATDNVSTAQFEVARMDRHVDTDLQHVLLKMSMMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNIYRLCFSGGKSISRCSNKAAFVEGLEDLWKSAGVGNGGDR*SKLFICRPSGTTAGVGGLFAPDWVMCAHVFQLTVESPADAVDIMAHLLAQPCLLIT 789 SI DH FHAL+KEAYFAFEAL QHP+GF S+ HG PE+ CIDGCAKI TD+VS QF++AR++R VD +L + +LKMSM+SKMVF + LRWV++AAPI GP SP+ GD GELM ALGDGAI+D+S+K+ GDLKNIYRLCF GK IS K + L+ LW+ A G+R KLFI +PSG+TAGV GLF D VM AHVFQ+T ESPADAVD++ HL C L T Sbjct: 13 NSIEDHKFHALIKEAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDIARVERDVDANLYNEMLKMSMISKMVFNAHLRWVLEAAPIFGP----------------TPVGSPEDGDAGELMRALGDGAITDLSDKSFGDLKNIYRLCFPDGKGISMYPTKELLAQCLQKLWELAD--GEGERCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVHLPVSYCTLST 246
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE) HSP 1 Score: 258 bits (660), Expect = 1.730e-78 Identity = 158/351 (45.01%), Postives = 209/351 (59.54%), Query Frame = 1 Query: 274 MMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNIYRLCFSGGKSIS---------------RCSNKAAFVEGLEDLWKSAGVGNGGDR*SKLFICRPSGTTAGVGGLFAPDWVMCAHVFQLTVESPADAVDIMAHLLAQPCLLITD-VPCMMAPIAEKRQPGLLENGGALPRNAEGEVSLAGMQPSGAHAHEFPDKHHLKLPPRGFPF----ALASTTSGADSIDKVYAVFASTETSLPLQAHVDFHALLRRAAEAAEENRQLKAVASAGGVFDASSSSQRMCELAERTLKSLHADGIYAMTLFELVFL 1266 M+SKMVF RLRWVV+AAP PHNRISN M RT R K+A E +P+ GD G+L+ ALGDGAI+D+SNKT DL+NIYRLC+ +S R ++ L W+SAG+G+ +R S++FI +PSG T GV GLF D V+ A VFQ+ ES AD VDI++H + + P + P GGALPRNAE +V L +Q GA A+EFPD + +++PP FP A AS A S+ VYA +A + +Q H+DF ALL+RA + E NR++ A D SSS++R+ +LAE TLKSLH G +AMTLFE+V + Sbjct: 1 MISKMVFDRRLRWVVEAAPTVSPHNRISNVMHRTARGKLAPEGAPERGDAGDLLRALGDGAITDLSNKTKDDLQNIYRLCYPPPARVSASDFWSRQRTRPCVQRFPPLELLIQCLTRPWESAGIGDR-ERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISHRQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYAVGQPMPGVQPHLDFRALLQRACDVVERNREVHATEGNASGVDWSSSAKRIADLAESTLKSLHKQGWHAMTLFEVVLM 350
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 261 bits (668), Expect = 1.300e-77 Identity = 162/413 (39.23%), Postives = 217/413 (52.54%), Query Frame = 1 Query: 34 RSIGDHNFHALVKEAYFAFEALSQHPYGFTSYFHGHHPELLCIDGCAKIATDNVSTAQFEVARMDRHVDTDLQHVLLKMSMMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNIYRLCFSGGKSISRCSNKAAFVEGLEDLWKSAGVGNGGDR*SKLFICRPSGTTAGVGGLFAPDWVMCAHVFQLTVESPADAVDIMAHLLAQPCLLITDVPCMMAPIAEKRQPGLLENGGALPRNAEGEVSLAGMQPSGAHAHEFPDKHHLKLPPRGFPFALASTTSGADSIDK----VYAVFASTETSLPLQAHVDFHALLRRAAEAAEENRQLKAVASAGGVFDASSSSQRMCELAERTLKSLHADGIYAMTLFELV 1260 + I DHNF A +++AYFAFE L+QHP+ F SY +GH PEL+ IDGCAK+ +D+ + A F+ AR +R VD DL H LLKMSM+SKM F+ + LW+ A + DR SK+FI RPSG TAGV GLF PD V+ +H+ Q+ P +A P +L+TD+PCM+AP AEK PGLL+NGGALPRNA+G+VSL G+Q GA +++PD+H +++PP G F AS +S A +D+ VY FA T S P+Q H+DF ALL+ A + E NRQ++ G D SSS +R+ ELAE +L+ LH G YA+ LFE+V Sbjct: 5 KLIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKM----------------------------------------------------------------------------------------EDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFA-TALSGPVQPHIDFSALLKHAGDVVERNRQVQ------GTDDWSSSPKRISELAETSLRYLHQQGCYALNLFEVV 322
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5KB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB33_9PHAE) HSP 1 Score: 242 bits (618), Expect = 1.010e-74 Identity = 125/225 (55.56%), Postives = 154/225 (68.44%), Query Frame = 1 Query: 37 SIGDHNFHALVKEAYFAFEALSQHPYGFTSYFHGHHPELLCIDGCAKIATDNVSTAQFEVARMDRHVDTDLQHVLLKMSMMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNIYRLCFSGGKSISRCSNKAAFVEGLEDLWKSAGVGNGGDR*SKLFICRPSGTTAGVGGLFAPD----WVMC 699 SI DHNF A +++AYFAFE L+QHP+ F SY +GH PEL+ IDGCAK+ +D+ + A F+ AR +R VD DL H LLKMSM+SKMVFR+RLRWV +A P G NRISN M RT R K S ++GD GEL+ AL G + D++ KTL DLKNIYRLCF GG+ IS + K F+ + LW+ A + DR SK+FI RPSG TAGV GLF PD W C Sbjct: 16 SIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSAETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVTLWTPC 240
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE) HSP 1 Score: 214 bits (546), Expect = 5.320e-65 Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 1 Query: 34 RSIGDHNFHALVKEAYFAFEALSQHPYGFTSYFHGHHPELLCIDGCAKIATDNVSTAQFEVARMDRHVDTDLQHVLLKMSMMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNI 501 SI DHNF AL+K+AYFAFEAL QHP+GF S+ HG PE+ CIDGCAKI TD+VS QF+ AR +R VD DL + +LKMSM+SKMVF +RLRWV++AAPI GPHNR+SN M RT R +MA SP++GD GELM ALGDGAI+D+S+K++ DLKNI Sbjct: 13 NSIEDHNFRALIKQAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDFARAERDVDADLHNEMLKMSMISKMVFNARLRWVLEAAPILGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKSVSDLKNI 168
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 201 bits (512), Expect = 2.320e-55 Identity = 115/227 (50.66%), Postives = 145/227 (63.88%), Query Frame = 1 Query: 610 GDR*SKLFICRPSGTTAGVGGLFAPDWVMCAHVFQLTVESPADAVDIMAHLLAQPCLLITDVPCMMAPIAEKRQPGLLENGGALPRNAEGEVSLAGMQPSGAHAHEFPDKHHLKLPPRGFPFALASTTSGADSIDKVYAVFAS--------TETSLPLQAHVDFHALLRRAAEAAEENRQLKAVASAGGVFDASSSSQRMCELAERTLKSLHADGIYAMTLFELVFL 1266 G+R SKLF+ +PSGTTAGV G F D V FQ+T ES AD VDI+AH+L QPCL+ITD+PC + PIAE+ PGLL++GG LPR+AEG+V L +Q GAHA+EFPD+H +K+PP GFP A+ T GA + ET+ +Q HVDF +LLRRAA+A + R V D SSS R+ +LAE TL LH G YAMTL+E+V L Sbjct: 7 GERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFP--TAAFTLGASPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRRAADAQDRART---------VADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLL 222
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5JY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY55_9PHAE) HSP 1 Score: 177 bits (450), Expect = 2.560e-50 Identity = 93/165 (56.36%), Postives = 113/165 (68.48%), Query Frame = 1 Query: 268 MSMMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNIYRLCFSGGKSISRCSNKAAFVEGLEDLWKSAGVGNGGDR*SKLFICRPSGTTAGVGGLFAPDWVMCAHVFQLTVESPADAVDIMAHL 762 MSM+SKMVFR+RLRWV +A P G NRISN M RT R K SP++GD GEL+ AL G + D++ KTL DLKNIYRLCF GG+ IS + K F+ + LW+ A + DR SK+FI RPSG TAGV GLF PD V+ +H+ Q+T ESPAD VD M HL Sbjct: 1 MSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSPETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVTSESPADVVDTMRHL 165
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Match: A0A6H5JL59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL59_9PHAE) HSP 1 Score: 165 bits (417), Expect = 3.270e-45 Identity = 89/172 (51.74%), Postives = 112/172 (65.12%), Query Frame = 1 Query: 268 MSMMSKMVFRSRLRWVVKAAPICGPHNRISNSMRRTEREKMAAERSPDSGDVGELMLALGDGAISDISNKTLGDLKNIYRLCFSGGKSISRCSNKAAFVEGLEDLWKSAGVGNGGDR*SKLFICRPSGTTAGVGGLFAPDWVMCAHVFQLTVESPADAVDIMAHLLAQPCLL 783 MSM+ KM+F +RLRWV++AAP GPHNR+SN M RT R +MA SP++GD GELM ALGDGA++D+S+K+ V+ L+ LW+SAG +R SKLFI +PSG+TAGV GLF D VM AHVFQ+T ESPADAVD++ HLL C L Sbjct: 1 MSMIYKMIFNARLRWVLEAAPTFGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAVTDLSDKS------------------------ELLVQCLQKLWESAGADGERERCSKLFIGKPSGSTAGVEGLFTGDGVMVAHVFQITAESPADAVDMLVHLLVSYCAL 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig101.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig101.126.1 >prot_H-canaliculatus_F_contig101.126.1 ID=prot_H-canaliculatus_F_contig101.126.1|Name=mRNA_H-canaliculatus_F_contig101.126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=192bp MCAHVFQLTVESPADAVDIMAHLLAQPCLLITDVPCMMAPIAEKRQPGLLback to top mRNA from alignment at H-canaliculatus_F_contig101:17024..19821+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig101.126.1 ID=mRNA_H-canaliculatus_F_contig101.126.1|Name=mRNA_H-canaliculatus_F_contig101.126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig101:17024..19821+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig101:17024..19821+ >mRNA_H-canaliculatus_F_contig101.126.1 ID=mRNA_H-canaliculatus_F_contig101.126.1|Name=mRNA_H-canaliculatus_F_contig101.126.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1152bp|location=Sequence derived from alignment at H-canaliculatus_F_contig101:17024..19821+ (Hapterophycus canaliculatus Oshoro5f female)back to top |